Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017184

Physical Location & Seq

Genomic Coordinates Reverse (-)

22322309 .. 22323302

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCAAGGTGGTGCATTGTGCTGGTTGTTCTTGCCCTAGCTGCAGTTCACACTACAGCAGGTAGGAATGTGCCTATGCCTAATGATGCTGGTTTCAAGGACCAGAAGAACATTATCGCCGGCGCCGGTGGGTTCTCTGGAATTGGTGACAACGGACTCCCCTTCGGTGGTGCTGGGGCCGGAGTTGGCGGCAATGTTGGCGGAGTAGGCGGTGGTGTTGGGATTGGTGGATTTGGCGGGCTAGGCGGTACTGGTGGAGTTGGTGGTGCTGGTGGCTTGGGTGGTCTCGGTGGACTAGGCGGCACTGGCGGCCTAGGCGGCTTGGGCAGCACTGGAGGACTAGGTGGCTTGGGCGGTACTGGTGGTCTTGGCGGATTAGGCGGTACTGGTGGCTTTGGGGGACTTGGTAGCGGCATACTGGGTGGTGCTGGGGGCGGCGGTGGTGGTGGATTTGGCGGTGGAAGCGGAGTTCTTCCTCAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

13.64

Weight (kDa)

7.98

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29030
fragaria_vesca	FvH4_2g19680
malus_domestica	MD05G1181500.v1.1
prunus_persica	Prupe.8G208000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0285411
rosa_laevigata	RLG00000012643
rosa_roxburghii	Rroxscaffold_7G00183230
rosa_rugosa	Rorug06G0174300
rosa_samantha	Rh6AG285200 Rh6BG286800 Rh6CG287900 Rh6DG280700
rosa_wichuraiana	Rw6G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	3 cut(s)	250, 358, 385
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	97
AloI	GAACNNNNNNTCC	2 cut(s)	453, 485
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	177, 310
ApeKI	GCWGC	2 cut(s)	41, 327
AspA2I	CCTAGG	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	100, 177
AsuHPI	GGTGA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	100
AvrII	CCTAGG	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	28, 339
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	5 cut(s)	38, 242, 296, 314, 341
BfmI	CTRYAG	2 cut(s)	42, 54
BfoI	RGCGCY	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	50
BglI	GCCNNNNNGGC	1 cut(s)	318
BisI	GCNGC	8 cut(s)	42, 190, 301, 310, 319, 328, 412, 436
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	8 cut(s)	43, 191, 302, 311, 320, 329, 413, 437
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	100, 177
BmiI	GGNNCC	2 cut(s)	124, 178
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	428
BpmI	CTGGAG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	2 cut(s)	119, 125
Bse1I	ACTGG	6 cut(s)	256, 310, 337, 364, 391, 423
Bse3DI	GCAATG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	199
BseNI	ACTGG	6 cut(s)	256, 310, 337, 364, 391, 423
BseXI	GCAGC	2 cut(s)	28, 339
BseYI	CCCAGC	2 cut(s)	173, 428
BshFI	GGCC	2 cut(s)	179, 312
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	120, 126, 180
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	179, 312
Bso31I	GGTCTC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	179, 312
BspLI	GGNNCC	2 cut(s)	124, 178
BspMAI	CTGCAG	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	199
BsrFI	RCCGGY	2 cut(s)	119, 125
BsrI	ACTGG	6 cut(s)	256, 310, 337, 364, 391, 423
BssAI	RCCGGY	2 cut(s)	119, 125
BssECI	CCNNGG	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	121, 239
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	290
BstSFI	CTRYAG	2 cut(s)	42, 54
BstV1I	GCAGC	2 cut(s)	28, 339
BsuRI	GGCC	2 cut(s)	179, 312
BtsIMutI	CAGTG	2 cut(s)	303, 330
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	121, 239
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	2 cut(s)	119, 125
Cfr13I	GGNCC	2 cut(s)	100, 177
Csp6I	GTAC	3 cut(s)	249, 357, 384
CviJI	RGCY	8 cut(s)	41, 179, 241, 276, 312, 321, 348, 393
CviKI_1	RGCY	8 cut(s)	41, 179, 241, 276, 312, 321, 348, 393
CviQI	GTAC	3 cut(s)	249, 357, 384
DinI	GGCGCC	1 cut(s)	124
EciI	GGCGGA	2 cut(s)	216, 387
Eco130I	CCWWGG	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	313
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	313
FaiI	YATR	2 cut(s)	77, 416
FaqI	GGGAC	1 cut(s)	414
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	8 cut(s)	42, 190, 301, 310, 319, 328, 412, 436
Fsp4HI	GCNGC	8 cut(s)	42, 190, 301, 310, 319, 328, 412, 436
FspBI	CTAG	5 cut(s)	38, 242, 296, 314, 341
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	8 cut(s)	42, 190, 301, 310, 319, 328, 412, 436
GsaI	CCCAGC	2 cut(s)	177, 432
GsuI	CTGGAG	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	179, 312
HapII	CCGG	3 cut(s)	120, 126, 180
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	3 cut(s)	120, 126, 180
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	49, 293
Hpy188III	TCNNGA	1 cut(s)	138
Hpy8I	GTNNAC	2 cut(s)	49, 293
HpyAV	CCTTC	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	15, 44
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	1 cut(s)	123
KasI	GGCGCC	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Lsp1109I	GCAGC	2 cut(s)	28, 339
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	5 cut(s)	38, 242, 296, 314, 341
MaeIII	GTNAC	1 cut(s)	146
MboII	GAAGA	2 cut(s)	118, 464
MluCI	AATT	1 cut(s)	141
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	2 cut(s)	329, 486
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	119
MspI	CCGG	3 cut(s)	120, 126, 180
NaeI	GCCGGC	1 cut(s)	121
NarI	GGCGCC	1 cut(s)	123
NgoMIV	GCCGGC	1 cut(s)	119
NlaIV	GGNNCC	2 cut(s)	124, 178
NmuCI	GTSAC	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	121
PkrI	GCNGC	8 cut(s)	43, 191, 302, 311, 320, 329, 413, 437
PleI	GAGTC	1 cut(s)	150
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	150
PspFI	CCCAGC	2 cut(s)	173, 428
PspN4I	GGNNCC	2 cut(s)	124, 178
PspPI	GGNCC	2 cut(s)	100, 177
PstI	CTGCAG	1 cut(s)	46
RsaI	GTAC	3 cut(s)	250, 358, 385
RsaNI	GTAC	3 cut(s)	249, 357, 384
SatI	GCNGC	8 cut(s)	42, 190, 301, 310, 319, 328, 412, 436
Sau96I	GGNCC	2 cut(s)	100, 177
SchI	GAGTC	1 cut(s)	150
SetI	ASST	5 cut(s)	11, 43, 64, 346, 484
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	2 cut(s)	42, 54
SfoI	GGCGCC	1 cut(s)	124
SgrAI	CRCCGGYG	2 cut(s)	119, 125
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	1 cut(s)	141
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	5 cut(s)	38, 242, 296, 314, 341
StyI	CCWWGG	1 cut(s)	313
TasI	AATT	1 cut(s)	141
TauI	GCSGC	6 cut(s)	192, 303, 312, 321, 414, 438
TscAI	CASTG	2 cut(s)	310, 337
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	2 cut(s)	41, 327
Tsp45I	GTSAC	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	2 cut(s)	310, 337
VpaK11BI	GGWCC	1 cut(s)	100
XmaJI	CCTAGG	1 cut(s)	313
XspI	CTAG	5 cut(s)	38, 242, 296, 314, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.