Rh6BG286800

Glycine-rich cell wall structural protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
51159241 .. 51159681
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG286800.1

Sequence Viewer

Length: 441 bp
ATGCCTAATGATGCTGGTTTCAAGGACCAGAAGAACATTATCGGCGGCACTGGTGGCTTCTCTGGAGTTGGTGACAACGGATTGCCCTTCGGTGGTGCTGGGGCCGGAGTTGGCGGCAATGTAGGCGGAGTAGGTGGTGGTGTTGGGATTGGTGGATTTGGCGGGCTAGGCGGTACTGGTGGAGTTGGTGGTGTCCCTGACTTGGGTGGTGCTGGTGGCTTGGGTGGTCTCGGTGGACTAGGAGGCACTGGCGGGCTAGGCGGCTTGGGCAGCACTGGAGGACTAGGTGGCTTGGGCGGTACTGGTGGTCTTGGCGGATTAGGCGGTACTGGTGGCTTTGGGGGACTTGGTAGCGGCATACTGGGTGGTGCTGGGGGCGGCGTTGGTGGTGGATTTGGTGGTGGATTCGGTGGTGGAAGCGGTGTTCTTCCTCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

11.9

Weight (kDa)

4.14

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29030
fragaria_vesca FvH4_2g19680
malus_domestica MD05G1181500.v1.1
prunus_persica Prupe.8G208000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0285411
rosa_laevigata RLG00000012643
rosa_roxburghii Rroxscaffold_7G00183230
rosa_rugosa Rorug06G0174300
rosa_samantha Rh6AG285200 Rh6BG286800 Rh6CG287900 Rh6DG280700
rosa_wichuraiana Rw6G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 175, 301, 328
AfiI CCNNNNNNNGG 3 cut(s) 92, 202, 203
AgsI TTSAA 1 cut(s) 22
AloI GAACNNNNNNTCC 2 cut(s) 408, 440
Alw26I GTCTC 1 cut(s) 233
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 25, 102
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 4 cut(s) 167, 239, 257, 284
BisI GCNGC 6 cut(s) 46, 115, 262, 271, 355, 379
BlsI GCNGC 6 cut(s) 47, 116, 263, 272, 356, 380
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 25, 102
BmiI GGNNCC 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 371
BmuI ACTGGG 1 cut(s) 371
BpmI CTGGAG 2 cut(s) 84, 297
BsaI GGTCTC 1 cut(s) 233
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 202, 203
Bse1I ACTGG 7 cut(s) 55, 181, 253, 280, 307, 334, 366
Bse3DI GCAATG 1 cut(s) 124
BseLI CCNNNNNNNGG 3 cut(s) 92, 202, 203
BseMI GCAATG 1 cut(s) 124
BseNI ACTGG 7 cut(s) 55, 181, 253, 280, 307, 334, 366
BseXI GCAGC 1 cut(s) 282
BseYI CCCAGC 2 cut(s) 98, 371
BshFI GGCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 2 cut(s) 179, 357
BslI CCNNNNNNNGG 3 cut(s) 92, 202, 203
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 2 cut(s) 179, 357
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 233
BspANI GGCC 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 124
BsrI ACTGG 7 cut(s) 55, 181, 253, 280, 307, 334, 366
BstC8I GCNNGC 2 cut(s) 164, 254
BstMAI GTCTC 1 cut(s) 233
BstMWI GCNNNNNNNGC 7 cut(s) 54, 123, 168, 258, 267, 270, 321
BstV1I GCAGC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 104
BtsIMutI CAGTG 3 cut(s) 48, 246, 273
Cac8I GCNNGC 2 cut(s) 164, 254
Cfr13I GGNCC 2 cut(s) 25, 102
Csp6I GTAC 3 cut(s) 174, 300, 327
CviJI RGCY 8 cut(s) 57, 104, 166, 219, 256, 264, 291, 336
CviKI_1 RGCY 8 cut(s) 57, 104, 166, 219, 256, 264, 291, 336
CviQI GTAC 3 cut(s) 174, 300, 327
EciI GGCGGA 2 cut(s) 141, 330
Eco31I GGTCTC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 25
FaiI YATR 1 cut(s) 359
FaqI GGGAC 2 cut(s) 179, 357
FauI CCCGC 2 cut(s) 155, 245
Fnu4HI GCNGC 6 cut(s) 46, 115, 262, 271, 355, 379
Fsp4HI GCNGC 6 cut(s) 46, 115, 262, 271, 355, 379
FspBI CTAG 4 cut(s) 167, 239, 257, 284
GluI GCNGC 6 cut(s) 46, 115, 262, 271, 355, 379
GsaI CCCAGC 2 cut(s) 102, 375
GsuI CTGGAG 2 cut(s) 84, 297
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 105
HinfI GANTC 1 cut(s) 405
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 236
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 7 cut(s) 54, 123, 168, 258, 267, 270, 321
Lsp1109I GCAGC 1 cut(s) 282
MaeI CTAG 4 cut(s) 167, 239, 257, 284
MaeIII GTNAC 1 cut(s) 71
MboII GAAGA 2 cut(s) 43, 419
MnlI CCTC 3 cut(s) 236, 272, 441
MspI CCGG 1 cut(s) 105
MwoI GCNNNNNNNGC 7 cut(s) 54, 123, 168, 258, 267, 270, 321
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 405
PkrI GCNGC 6 cut(s) 47, 116, 263, 272, 356, 380
PspFI CCCAGC 2 cut(s) 98, 371
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 25, 102
RsaI GTAC 3 cut(s) 175, 301, 328
RsaNI GTAC 3 cut(s) 174, 300, 327
SatI GCNGC 6 cut(s) 46, 115, 262, 271, 355, 379
Sau96I GGNCC 2 cut(s) 25, 102
SetI ASST 3 cut(s) 136, 289, 439
SinI GGWCC 1 cut(s) 25
SspMI CTAG 4 cut(s) 167, 239, 257, 284
TauI GCSGC 5 cut(s) 48, 117, 264, 357, 381
TfiI GAWTC 1 cut(s) 405
TscAI CASTG 3 cut(s) 55, 253, 280
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 3 cut(s) 55, 253, 280
VpaK11BI GGWCC 1 cut(s) 25
XspI CTAG 4 cut(s) 167, 239, 257, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.