Rh6CG287900

Glycine-rich cell wall structural protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
46569632 .. 46570432
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG287900.1

Sequence Viewer

Length: 504 bp
ATGGCAAGGTGGTGCATTGTGCTGGTTGTTCTTGCCCTAGCTGCAGTTCACACTACAGCAGGTAGGAATGTGCCTATGCCTAATGATGCTGGTTTCAAGGACCAGAAGAACATTATCGGCGGCGCTGGTGGCTTCTCTGGAGTTGGTGACAACGGATTGCCCTTCGGTGGTGCTGGGGCCGGAGTTGGCGGCAATGTTGGCGGAGTAGGTGGTGGTGTTGGGATTGGTGGATTTGGCGGGCTAGGCGGTACTGGTGGAGTTGGTGGTGTCCCTGACTTGGGTGGTGCTGGTGGCTTGGGTGGTCTCGGTGGACTAGGCGGCACTGGCGGGCTAGGCGGCTTGGGCAGCACTGGAGGACTAGGTGGCTTGGGCGGTACTGGTGGTCTTGGCGGATTAGGCGGTACTGGTGGCTTTGGGGGACTTGGTAGCGGCATACTGGGTGGTGCTGGGGGCGGCGTTGGTGGTGGATTTGGTGGTGGAAGCGGTGTTCTTCCTCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

14.19

Weight (kDa)

6.5

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29030
fragaria_vesca FvH4_2g19680
malus_domestica MD05G1181500.v1.1
prunus_persica Prupe.8G208000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0285411
rosa_laevigata RLG00000012643
rosa_roxburghii Rroxscaffold_7G00183230
rosa_rugosa Rorug06G0174300
rosa_samantha Rh6AG285200 Rh6BG286800 Rh6CG287900 Rh6DG280700
rosa_wichuraiana Rw6G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 50
AfaI GTAC 3 cut(s) 250, 376, 403
AfiI CCNNNNNNNGG 3 cut(s) 167, 277, 278
AgsI TTSAA 1 cut(s) 97
AloI GAACNNNNNNTCC 2 cut(s) 471, 503
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 308
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 41, 345
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 100, 177
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 28, 357
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 5 cut(s) 38, 242, 314, 332, 359
BfmI CTRYAG 2 cut(s) 42, 54
BfoI RGCGCY 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 8 cut(s) 42, 121, 190, 319, 337, 346, 430, 454
BlsI GCNGC 8 cut(s) 43, 122, 191, 320, 338, 347, 431, 455
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 100, 177
BmiI GGNNCC 1 cut(s) 178
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 446
BpmI CTGGAG 2 cut(s) 159, 372
BsaI GGTCTC 1 cut(s) 308
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 277, 278
Bse1I ACTGG 6 cut(s) 256, 328, 355, 382, 409, 441
Bse3DI GCAATG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 167, 277, 278
BseMI GCAATG 1 cut(s) 199
BseNI ACTGG 6 cut(s) 256, 328, 355, 382, 409, 441
BseXI GCAGC 2 cut(s) 28, 357
BseYI CCCAGC 2 cut(s) 173, 446
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 254, 432
BslI CCNNNNNNNGG 3 cut(s) 167, 277, 278
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 2 cut(s) 254, 432
BsnI GGCC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 308
BspANI GGCC 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 6 cut(s) 256, 328, 355, 382, 409, 441
BstC8I GCNNGC 2 cut(s) 239, 329
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 308
BstMWI GCNNNNNNNGC 9 cut(s) 41, 129, 198, 243, 324, 333, 342, 345, 396
BstSFI CTRYAG 2 cut(s) 42, 54
BstV1I GCAGC 2 cut(s) 28, 357
BsuRI GGCC 1 cut(s) 179
BtsIMutI CAGTG 2 cut(s) 321, 348
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 239, 329
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 100, 177
Csp6I GTAC 3 cut(s) 249, 375, 402
CviJI RGCY 9 cut(s) 41, 132, 179, 241, 294, 331, 339, 366, 411
CviKI_1 RGCY 9 cut(s) 41, 132, 179, 241, 294, 331, 339, 366, 411
CviQI GTAC 3 cut(s) 249, 375, 402
EciI GGCGGA 2 cut(s) 216, 405
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 100
FaiI YATR 2 cut(s) 77, 434
FaqI GGGAC 2 cut(s) 254, 432
FauI CCCGC 2 cut(s) 230, 320
Fnu4HI GCNGC 8 cut(s) 42, 121, 190, 319, 337, 346, 430, 454
Fsp4HI GCNGC 8 cut(s) 42, 121, 190, 319, 337, 346, 430, 454
FspBI CTAG 5 cut(s) 38, 242, 314, 332, 359
GlaI GCGC 1 cut(s) 124
GluI GCNGC 8 cut(s) 42, 121, 190, 319, 337, 346, 430, 454
GsaI CCCAGC 2 cut(s) 177, 450
GsuI CTGGAG 2 cut(s) 159, 372
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 49, 311
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 2 cut(s) 49, 311
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 15, 44
HpyF10VI GCNNNNNNNGC 9 cut(s) 41, 129, 198, 243, 324, 333, 342, 345, 396
HspAI GCGC 1 cut(s) 123
Lsp1109I GCAGC 2 cut(s) 28, 357
LweI GCATC 1 cut(s) 76
MaeI CTAG 5 cut(s) 38, 242, 314, 332, 359
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 2 cut(s) 118, 482
MnlI CCTC 2 cut(s) 347, 504
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 9 cut(s) 41, 129, 198, 243, 324, 333, 342, 345, 396
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 146
PkrI GCNGC 8 cut(s) 43, 122, 191, 320, 338, 347, 431, 455
PspFI CCCAGC 2 cut(s) 173, 446
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 2 cut(s) 100, 177
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 3 cut(s) 250, 376, 403
RsaNI GTAC 3 cut(s) 249, 375, 402
SatI GCNGC 8 cut(s) 42, 121, 190, 319, 337, 346, 430, 454
Sau96I GGNCC 2 cut(s) 100, 177
SetI ASST 6 cut(s) 11, 43, 64, 211, 364, 502
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 2 cut(s) 42, 54
SinI GGWCC 1 cut(s) 100
SspMI CTAG 5 cut(s) 38, 242, 314, 332, 359
TauI GCSGC 6 cut(s) 123, 192, 321, 339, 432, 456
TscAI CASTG 2 cut(s) 328, 355
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 41, 345
Tsp45I GTSAC 1 cut(s) 146
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 2 cut(s) 328, 355
VpaK11BI GGWCC 1 cut(s) 100
XspI CTAG 5 cut(s) 38, 242, 314, 332, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.