RLG00000012643

Glycine-rich cell wall structural protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
20834827 .. 20835219
393 bp
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UTR
Exon/CDS
Intron
RLM00000012643

Sequence Viewer

Length: 393 bp
ATGCCTAATGATGCTGGTTTCAAGGACCAGAAGAACATTATCGGCGGCGCTGGTGGCTTCTCTGGAATTGGTGACAACGGACTCCCCTTCGGTGGTGCTGGGGCCGGAGTTGGCGGCAATGTTGGCGGAGTAGGTGGTGGTGTTGGGATTGGTGGAGTTGGCGGGCTAGGCGGTACTGGTGGAGTTGGTGGTGCTGGTGGCTTGGGTGGTCTCGGTGGACTAGGTGGCACTGGCGGGCTAGGCGGTTTCGGCGGCACTGGAGGACTAGGTGGCTTGGGCGGTACTGGTGGTCTTGGCGGATTAGGCGGTACTGGTGGCTTTGGGGGACTTGGTAGCGGCATACTGGGTGGTGGTGGATTTGGCGGTGGAAGCGGTGTTCTTCCTCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

10.58

Weight (kDa)

4.43

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29030
fragaria_vesca FvH4_2g19680
malus_domestica MD05G1181500.v1.1
prunus_persica Prupe.8G208000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0285411
rosa_laevigata RLG00000012643
rosa_roxburghii Rroxscaffold_7G00183230
rosa_rugosa Rorug06G0174300
rosa_samantha Rh6AG285200 Rh6BG286800 Rh6CG287900 Rh6DG280700
rosa_wichuraiana Rw6G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 175, 283, 310
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 22
AloI GAACNNNNNNTCC 2 cut(s) 360, 392
Alw26I GTCTC 1 cut(s) 215
AoxI GGCC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 25, 102
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 4 cut(s) 167, 221, 239, 266
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 4 cut(s) 46, 115, 253, 337
BlsI GCNGC 4 cut(s) 47, 116, 254, 338
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 25, 102
BmiI GGNNCC 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 6 cut(s) 181, 235, 262, 289, 316, 348
Bse3DI GCAATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 1 cut(s) 124
BseNI ACTGG 6 cut(s) 181, 235, 262, 289, 316, 348
BseYI CCCAGC 1 cut(s) 98
BshFI GGCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 215
BspANI GGCC 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 124
BsrI ACTGG 6 cut(s) 181, 235, 262, 289, 316, 348
BstC8I GCNNGC 2 cut(s) 164, 236
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstMAI GTCTC 1 cut(s) 215
BstMWI GCNNNNNNNGC 7 cut(s) 54, 123, 168, 240, 249, 303, 369
BsuRI GGCC 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 228, 255
Cac8I GCNNGC 2 cut(s) 164, 236
CfoI GCGC 1 cut(s) 50
Cfr13I GGNCC 2 cut(s) 25, 102
Csp6I GTAC 3 cut(s) 174, 282, 309
CviJI RGCY 7 cut(s) 57, 104, 166, 201, 238, 273, 318
CviKI_1 RGCY 7 cut(s) 57, 104, 166, 201, 238, 273, 318
CviQI GTAC 3 cut(s) 174, 282, 309
EciI GGCGGA 2 cut(s) 141, 312
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 25
FaiI YATR 1 cut(s) 341
FaqI GGGAC 1 cut(s) 339
FauI CCCGC 2 cut(s) 155, 227
Fnu4HI GCNGC 4 cut(s) 46, 115, 253, 337
Fsp4HI GCNGC 4 cut(s) 46, 115, 253, 337
FspBI CTAG 4 cut(s) 167, 221, 239, 266
GlaI GCGC 1 cut(s) 49
GluI GCNGC 4 cut(s) 46, 115, 253, 337
GsaI CCCAGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 50
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 1 cut(s) 81
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 7 cut(s) 54, 123, 168, 240, 249, 303, 369
HspAI GCGC 1 cut(s) 48
MaeI CTAG 4 cut(s) 167, 221, 239, 266
MaeIII GTNAC 1 cut(s) 71
MboII GAAGA 2 cut(s) 43, 371
MluCI AATT 1 cut(s) 66
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 2 cut(s) 254, 393
MspI CCGG 1 cut(s) 105
MwoI GCNNNNNNNGC 7 cut(s) 54, 123, 168, 240, 249, 303, 369
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 71
PkrI GCNGC 4 cut(s) 47, 116, 254, 338
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 25, 102
RsaI GTAC 3 cut(s) 175, 283, 310
RsaNI GTAC 3 cut(s) 174, 282, 309
SatI GCNGC 4 cut(s) 46, 115, 253, 337
Sau96I GGNCC 2 cut(s) 25, 102
SchI GAGTC 1 cut(s) 75
SetI ASST 4 cut(s) 136, 226, 271, 391
SinI GGWCC 1 cut(s) 25
Sse9I AATT 1 cut(s) 66
SspMI CTAG 4 cut(s) 167, 221, 239, 266
TasI AATT 1 cut(s) 66
TauI GCSGC 4 cut(s) 48, 117, 255, 339
TscAI CASTG 2 cut(s) 235, 262
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 2 cut(s) 235, 262
VpaK11BI GGWCC 1 cut(s) 25
XspI CTAG 4 cut(s) 167, 221, 239, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.