AT4G29660

At4g29660-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014011
Physical Location & Seq
Reverse (-)
14534181 .. 14535356
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29660.1

Sequence Viewer

Length: 312 bp
ATGCAAGGAGTGTGGAGCCAACTATGGAGGAAATATGCTGATTATAAGTACAATAAGTTCGAGAGATTTGCTGTTTGGGAAATGATCGAACCTTACCGTCGACCAAAAACCTTCACAACTTTGATTACTATCTATGTCGCCGCCTTTTACACCGGCGTCATCGGCGCTGCAGTTACAGAGCAGCTCTACAAGGAGAAGTTTTGGGAAGAGCACCCAGGGAAAACAGTGCCTCTGATGAAGCCAGTATTCTATCGAGGACCATGGAGAGTTTATCGTGGTGAGGCTATTGCTTCAGATGCTAGCAGCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.27

Weight (kDa)

9.49

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29660
fragaria_vesca FvH4_1g07240 FvH4_1g24820
malus_domestica MD02G1077000.v1.1 MD15G1205700.v1.1
prunus_persica Prupe.7G211400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0093151
rosa_laevigata RLG00000015678
rosa_multiflora Rmu_sc0003724.1_g000004
rosa_roxburghii Rroxscaffold_2G00110150 Rroxscaffold_7G00185150
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078900 Rh2BG080200 Rh2CG082400 Rh2DG077900
rosa_wichuraiana Rw2G006760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
AccI GTMKAC 1 cut(s) 100
AciI CCGC 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 50
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw21I GWGCWC 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 167, 181, 303
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 290
AsuNHI GCTAGC 1 cut(s) 299
AvaII GGWCC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 154, 193
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 1 cut(s) 216
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 168
BisI GCNGC 4 cut(s) 141, 168, 182, 304
BlsI GCNGC 4 cut(s) 142, 169, 183, 305
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 286
BmtI GCTAGC 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 3 cut(s) 214, 215, 260
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 242, 307
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 214, 215, 260
BseJI GATNNNNATC 1 cut(s) 128
BseNI ACTGG 2 cut(s) 242, 307
BseXI GCAGC 2 cut(s) 154, 193
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 84
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 17
BspMAI CTGCAG 1 cut(s) 172
BspOI GCTAGC 1 cut(s) 303
BspQI GCTCTTC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 2 cut(s) 242, 307
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 3 cut(s) 214, 215, 260
BssMI GATC 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 98, 226
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 301
BstDSI CCRYGG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 162, 296
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 154, 193
BtgI CCRYGG 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 49
CspCI CAANNNNNGTGG 1 cut(s) 28
CviAII CATG 1 cut(s) 261
CviJI RGCY 5 cut(s) 18, 184, 241, 284, 306
CviKI_1 RGCY 5 cut(s) 18, 184, 241, 284, 306
CviQI GTAC 1 cut(s) 49
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 1 cut(s) 264
FaiI YATR 5 cut(s) 25, 36, 45, 135, 262
FatI CATG 1 cut(s) 260
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 4 cut(s) 141, 168, 182, 304
Fsp4HI GCNGC 4 cut(s) 141, 168, 182, 304
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 166
GluI GCNGC 4 cut(s) 141, 168, 182, 304
HaeII RGCGCY 1 cut(s) 168
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 1 cut(s) 264
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 101
HindII GTYRAC 1 cut(s) 101
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 2 cut(s) 234, 295
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 2 cut(s) 98, 226
HpyCH4V TGCA 2 cut(s) 4, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 296
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 1 cut(s) 264
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 4 cut(s) 166, 201, 228, 255
Lsp1109I GCAGC 2 cut(s) 154, 193
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 213
MnlI CCTC 4 cut(s) 21, 240, 248, 274
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 162, 296
NcoI CCATGG 1 cut(s) 260
NdeII GATC 1 cut(s) 84
NheI GCTAGC 1 cut(s) 299
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 17
PasI CCCWGGG 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 201
PkrI GCNGC 4 cut(s) 142, 169, 183, 305
PsiI TTATAA 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 257
PsrI GAACNNNNNNTAC 2 cut(s) 41, 73
PstI CTGCAG 1 cut(s) 172
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SalI GTCGAC 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 201
SatI GCNGC 4 cut(s) 141, 168, 182, 304
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 213
SetI ASST 3 cut(s) 94, 113, 186
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 168
SgrAI CRCCGGYG 1 cut(s) 152
SinI GGWCC 1 cut(s) 257
SsiI CCGC 1 cut(s) 141
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 98, 226
TaqI TCGA 4 cut(s) 60, 87, 100, 253
TatI WGTACW 1 cut(s) 48
TauI GCSGC 1 cut(s) 143
TscAI CASTG 1 cut(s) 231
TseI GCWGC 3 cut(s) 167, 181, 303
TspDTI ATGAA 1 cut(s) 251
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 100
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.