Rroxscaffold_7G00185150

At4g29660-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014011
Physical Location & Seq
Forward (+)
24556311 .. 24557665
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185150.1

Sequence Viewer

Length: 312 bp
ATGACACCATCGGTGCCTCCACCTTTGCACCATCGGCACCTCCACCTTTGCTCTCCCTGGTGGCGACCTCGAGTTCGGACCAAATCGTTTATGCCTCTCGTCACTATCTACGTCGCCGCTTTCTACACGGGAGTCGCCTCTCGCCCATCACTAAACAGCTCTACAAGGCTTGTAGCTCATTTACAATGGTCTGCGGAAAAATACTGGGAAGATCATCCTGGCCATGCAGTCCCACTTATGAAGCCCAAGTTTTATGGAGGACCTTGGAAGGTAGAGAGAGGAGAGGTTCCAGCCGATCTCCCACCCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.79

Weight (kDa)

9.91

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29660
fragaria_vesca FvH4_1g07240 FvH4_1g24820
malus_domestica MD02G1077000.v1.1 MD15G1205700.v1.1
prunus_persica Prupe.7G211400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0093151
rosa_laevigata RLG00000015678
rosa_multiflora Rmu_sc0003724.1_g000004
rosa_roxburghii Rroxscaffold_2G00110150 Rroxscaffold_7G00185150
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078900 Rh2BG080200 Rh2CG082400 Rh2DG077900
rosa_wichuraiana Rw2G006760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 36
AciI CCGC 2 cut(s) 117, 194
AcoI YGGCCR 1 cut(s) 220
AjnI CCWGG 2 cut(s) 56, 217
AluBI AGCT 2 cut(s) 159, 176
AluI AGCT 2 cut(s) 159, 176
Ama87I CYCGRG 1 cut(s) 69
AoxI GGCC 1 cut(s) 220
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AspS9I GGNCC 2 cut(s) 78, 260
AvaI CYCGRG 1 cut(s) 69
AvaII GGWCC 2 cut(s) 78, 260
BalI TGGCCA 1 cut(s) 222
BanI GGYRCC 2 cut(s) 13, 36
BccI CCATC 3 cut(s) 16, 39, 154
BciT130I CCWGG 2 cut(s) 58, 219
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 58, 219
Bme18I GGWCC 2 cut(s) 78, 260
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 78, 260
BmiI GGNNCC 3 cut(s) 15, 38, 288
BmrFI CCNGG 2 cut(s) 58, 219
BmrI ACTGGG 1 cut(s) 214
BmuI ACTGGG 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 56, 263
Bse1I ACTGG 1 cut(s) 209
BseBI CCWGG 2 cut(s) 58, 219
BseDI CCNNGG 2 cut(s) 56, 263
BseGI GGATG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 294
BshFI GGCC 1 cut(s) 222
BshNI GGYRCC 2 cut(s) 13, 36
BsiHKCI CYCGRG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 69
Bsp143I GATC 2 cut(s) 211, 295
BspACI CCGC 2 cut(s) 117, 194
BspANI GGCC 1 cut(s) 222
BspLI GGNNCC 3 cut(s) 15, 38, 288
BspT107I GGYRCC 2 cut(s) 13, 36
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 56, 263
BssMI GATC 2 cut(s) 211, 295
BssT1I CCWWGG 1 cut(s) 263
Bst2UI CCWGG 2 cut(s) 58, 219
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 2 cut(s) 214, 298
BstMBI GATC 2 cut(s) 211, 295
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 2 cut(s) 58, 219
BstSCI CCNGG 2 cut(s) 56, 217
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 78, 260
CviAII CATG 1 cut(s) 224
CviJI RGCY 6 cut(s) 159, 169, 176, 222, 244, 293
CviKI_1 RGCY 6 cut(s) 159, 169, 176, 222, 244, 293
DpnI GATC 2 cut(s) 213, 297
DpnII GATC 2 cut(s) 211, 295
EaeI YGGCCR 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 263
Eco47I GGWCC 2 cut(s) 78, 260
Eco88I CYCGRG 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 56, 217
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 92, 225, 239, 255, 310
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 222
Hin1II CATG 1 cut(s) 227
HinfI GANTC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 78
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 28, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 2 cut(s) 211, 295
LpnPI CCDG 6 cut(s) 43, 70, 190, 204, 231, 303
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 213, 297
MboI GATC 2 cut(s) 211, 295
MboII GAAGA 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 8 cut(s) 27, 50, 78, 105, 148, 251, 272, 277
Mox20I TGGCCA 1 cut(s) 222
MscI TGGCCA 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 58, 219
MvaI CCWGG 2 cut(s) 58, 219
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 2 cut(s) 211, 295
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 3 cut(s) 15, 38, 288
NmuCI GTSAC 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 69
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 56, 217
PspGI CCWGG 2 cut(s) 56, 217
PspN4I GGNNCC 3 cut(s) 15, 38, 288
PspPI GGNCC 2 cut(s) 78, 260
PspPPI RGGWCCY 1 cut(s) 260
PspXI VCTCGAGB 1 cut(s) 69
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 211, 295
Sau96I GGNCC 2 cut(s) 78, 260
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 2 cut(s) 58, 219
Sfr274I CTCGAG 1 cut(s) 69
SinI GGWCC 2 cut(s) 78, 260
SlaI CTCGAG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
SsiI CCGC 2 cut(s) 117, 194
StyD4I CCNGG 2 cut(s) 56, 217
StyI CCWWGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 70
TauI GCSGC 1 cut(s) 119
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 78, 260
XhoI CTCGAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.