RLG00000015678

At4g29660-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014011
Physical Location & Seq
Forward (+)
580309 .. 581645
1337 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015678

Sequence Viewer

Length: 393 bp
ATGTCCGGAAATTATACCAGCTTTGATGATCAAAAACGTCTCAGGATCTGTTCCTTTGTGAGTATTCAATTTCACATATACATAGAGATAATCCACGCACAAATACGTACGTCTGGTTCATCAATCTTGGCTGATTTTGCAAGCGGTTCTAGATCCAGGTCGCCTCACCGTCAAATTTTAAGCCTCTGTTCCTCATTCCATAAAGATGGAGCTTTTGCAAAGGACTTGTACGTTTCTACCGTTCGCAGCTCTTTAATTTTTAAAGCATCAGTCATGGAAAAATACTGGGAAGATCATCTTGGCCATGCAGTCCCACTTATGAAGCCCAAGTTTTATGGAGGACCTTGGAAGGTCGAGAAAGGACAGGTTCCGGCCACTCTCCCACCCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.63

Weight (kDa)

9.51

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29660
fragaria_vesca FvH4_1g07240 FvH4_1g24820
malus_domestica MD02G1077000.v1.1 MD15G1205700.v1.1
prunus_persica Prupe.7G211400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0093151
rosa_laevigata RLG00000015678
rosa_multiflora Rmu_sc0003724.1_g000004
rosa_roxburghii Rroxscaffold_2G00110150 Rroxscaffold_7G00185150
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078900 Rh2BG080200 Rh2CG082400 Rh2DG077900
rosa_wichuraiana Rw2G006760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 1 cut(s) 144
AclWI GGATC 2 cut(s) 53, 147
AcoI YGGCCR 2 cut(s) 301, 372
AcsI RAATTY 1 cut(s) 174
AfaI GTAC 2 cut(s) 109, 230
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 3 cut(s) 21, 212, 249
AluI AGCT 3 cut(s) 21, 212, 249
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 2 cut(s) 53, 147
AlwNI CAGNNNCTG 1 cut(s) 48
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 2 cut(s) 301, 372
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 303
BbvI GCAGC 1 cut(s) 258
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 157
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 150
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 295
BsaAI YACGTR 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 290
BseAI TCCGGA 1 cut(s) 5
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 258
BshFI GGCC 2 cut(s) 303, 374
BsiSI CCGG 2 cut(s) 6, 371
BsiWI CGTACG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 303, 374
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 4 cut(s) 28, 45, 152, 292
BspACI CCGC 1 cut(s) 144
BspANI GGCC 2 cut(s) 303, 374
BspCNI CTCAG 1 cut(s) 54
BspEI TCCGGA 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 2 cut(s) 53, 147
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 4 cut(s) 28, 45, 152, 292
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 170, 241
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 41
BstKTI GATC 4 cut(s) 31, 48, 155, 295
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 4 cut(s) 28, 45, 152, 292
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstSNI TACGTA 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 258
BstX2I RGATCY 2 cut(s) 45, 152
BstXI CCANNNNNNTGG 1 cut(s) 206
BstYI RGATCY 2 cut(s) 45, 152
BsuRI GGCC 2 cut(s) 303, 374
Cac8I GCNNGC 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 341
Csp6I GTAC 2 cut(s) 108, 229
CviAII CATG 2 cut(s) 274, 305
CviJI RGCY 8 cut(s) 21, 131, 183, 212, 249, 303, 325, 374
CviKI_1 RGCY 8 cut(s) 21, 131, 183, 212, 249, 303, 325, 374
CviQI GTAC 2 cut(s) 108, 229
DdeI CTNAG 1 cut(s) 41
DpnI GATC 4 cut(s) 30, 47, 154, 294
DpnII GATC 4 cut(s) 28, 45, 152, 292
DraI TTTAAA 1 cut(s) 262
EaeI YGGCCR 2 cut(s) 301, 372
Eco105I TACGTA 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 2 cut(s) 277, 308
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 273, 304
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 247
FspBI CTAG 1 cut(s) 150
GluI GCNGC 1 cut(s) 247
HaeIII GGCC 2 cut(s) 303, 374
HapII CCGG 2 cut(s) 6, 371
Hin1II CATG 2 cut(s) 277, 308
HpaII CCGG 2 cut(s) 6, 371
HphI GGTGA 1 cut(s) 158
Hpy188III TCNNGA 4 cut(s) 6, 43, 150, 355
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 170, 241
HpyCH4IV ACGT 4 cut(s) 37, 106, 110, 231
HpyCH4V TGCA 3 cut(s) 140, 218, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 4 cut(s) 37, 106, 110, 231
Hsp92II CATG 2 cut(s) 277, 308
Kpn2I TCCGGA 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 4 cut(s) 28, 45, 152, 292
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 9 cut(s) 19, 28, 31, 99, 142, 169, 271, 350, 384
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 1 cut(s) 275
MaeI CTAG 1 cut(s) 150
MaeII ACGT 4 cut(s) 37, 106, 110, 231
MalI GATC 4 cut(s) 30, 47, 154, 294
MboI GATC 4 cut(s) 28, 45, 152, 292
MboII GAAGA 1 cut(s) 302
MflI RGATCY 2 cut(s) 45, 152
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 4 cut(s) 10, 68, 174, 255
MluNI TGGCCA 1 cut(s) 303
MnlI CCTC 4 cut(s) 174, 194, 202, 332
Mox20I TGGCCA 1 cut(s) 303
MroI TCCGGA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 303
MseI TTAA 3 cut(s) 179, 254, 261
MslI CAYNNNNRTG 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 303
MspI CCGG 2 cut(s) 6, 371
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 4 cut(s) 28, 45, 152, 292
NlaIII CATG 2 cut(s) 277, 308
NlaIV GGNNCC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 237
Pfl23II CGTACG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 107
PpuMI RGGWCCY 1 cut(s) 341
Psp5II RGGWCCY 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspLI CGTACG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 1 cut(s) 341
PspPPI RGGWCCY 1 cut(s) 341
PsrI GAACNNNNNNTAC 2 cut(s) 100, 132
PstNI CAGNNNCTG 1 cut(s) 48
PsuI RGATCY 2 cut(s) 45, 152
RsaI GTAC 2 cut(s) 109, 230
RsaNI GTAC 2 cut(s) 108, 229
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 3 cut(s) 179, 254, 261
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 4 cut(s) 28, 45, 152, 292
Sau96I GGNCC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 157
SfaNI GCATC 1 cut(s) 275
SinI GGWCC 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 204
SnaBI TACGTA 1 cut(s) 107
Sse9I AATT 4 cut(s) 10, 68, 174, 255
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 170, 241
TaiI ACGT 4 cut(s) 40, 109, 113, 234
TaqI TCGA 1 cut(s) 354
TasI AATT 4 cut(s) 10, 68, 174, 255
Tru1I TTAA 3 cut(s) 179, 254, 261
Tru9I TTAA 3 cut(s) 179, 254, 261
TseI GCWGC 1 cut(s) 246
TspDTI ATGAA 2 cut(s) 108, 335
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 1 cut(s) 174
XbaI TCTAGA 1 cut(s) 149
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.