MD15G1205700.v1.1

At4g29660-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014011
Physical Location & Seq
Reverse (-)
16338054 .. 16340721
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1205700.v1.1.491

Sequence Viewer

Length: 291 bp
ATGGCGAGCAATCTATGGAGGAAATACGCAGACTACGTTTACACCAAGTGGGAAAGGATGATTCTTTGGAACATGGTGGAGCCCTACAGCAGACCCAAATCGTTCACCCCATTGGTCACCATCTACGTCGCCGCTTTCTACACCGGGGTCATTGGTTCTGCTATCACTGAGCAGCTTTACAAGGAAAAGTACTGGGAAGAACATCCTGGGCAGGCCGTGCCTCTTATGAAGCCAAAGTTTTACGGAGGACCGTGGAGGGTGCAGCAAGGAGAAGTCCCAGCCACTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.31

Weight (kDa)

9.16

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29660
fragaria_vesca FvH4_1g07240 FvH4_1g24820
malus_domestica MD02G1077000.v1.1 MD15G1205700.v1.1
prunus_persica Prupe.7G211400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0093151
rosa_laevigata RLG00000015678
rosa_multiflora Rmu_sc0003724.1_g000004
rosa_roxburghii Rroxscaffold_2G00110150 Rroxscaffold_7G00185150
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078900 Rh2BG080200 Rh2CG082400 Rh2DG077900
rosa_wichuraiana Rw2G006760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 132
AdeI CACNNNGTG 2 cut(s) 48, 288
AfaI GTAC 1 cut(s) 191
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 172, 262
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 97, 109
AvaII GGWCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 184, 274
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 207
BcnI CCSGG 1 cut(s) 145
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 3 cut(s) 132, 173, 263
BlsI GCNGC 3 cut(s) 133, 174, 264
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 2 cut(s) 145, 207
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 145, 207
BmrI ACTGGG 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 145
BsaJI CCNNGG 3 cut(s) 144, 206, 251
Bse1I ACTGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 144, 206, 251
BseGI GGATG 2 cut(s) 63, 202
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 184, 274
BseYI CCCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 1 cut(s) 215
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 81
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 144, 206, 251
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 7, 213
BstDEI CTNAG 2 cut(s) 168, 285
BstDSI CCRYGG 1 cut(s) 251
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 2 cut(s) 63, 202
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 207
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 143, 205
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 2 cut(s) 184, 274
BsuRI GGCC 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 2 cut(s) 63, 202
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 7, 213
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 73
CviJI RGCY 5 cut(s) 82, 175, 215, 232, 281
CviKI_1 RGCY 5 cut(s) 82, 175, 215, 232, 281
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 2 cut(s) 168, 285
DraIII CACNNNGTG 2 cut(s) 48, 288
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 1 cut(s) 76
FaiI YATR 3 cut(s) 16, 74, 227
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 132, 173, 263
FokI GGATG 2 cut(s) 70, 189
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 3 cut(s) 132, 173, 263
GluI GCNGC 3 cut(s) 132, 173, 263
GsaI CCCAGC 1 cut(s) 281
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 144
Hin1II CATG 1 cut(s) 76
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 144
HphI GGTGA 2 cut(s) 97, 109
Hpy166II GTNNAC 2 cut(s) 40, 105
Hpy8I GTNNAC 2 cut(s) 40, 105
Hpy99I CGWCG 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 2 cut(s) 36, 126
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 2 cut(s) 168, 285
HpySE526I ACGT 2 cut(s) 36, 126
Hsp92II CATG 1 cut(s) 76
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 5 cut(s) 157, 178, 192, 197, 219
Lsp1109I GCAGC 2 cut(s) 184, 274
MaeII ACGT 2 cut(s) 36, 126
MaeIII GTNAC 1 cut(s) 115
MboII GAAGA 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 84
MnlI CCTC 4 cut(s) 12, 231, 239, 249
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 145, 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 145
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 133, 174, 264
Psp6I CCWGG 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 248
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SatI GCNGC 3 cut(s) 132, 173, 263
Sau96I GGNCC 1 cut(s) 248
ScaI AGTACT 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 145, 207
SduI GDGCHC 1 cut(s) 84
SetI ASST 3 cut(s) 39, 129, 177
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 1 cut(s) 248
SsiI CCGC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 143, 205
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 2 cut(s) 39, 129
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 61
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 2 cut(s) 172, 262
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.