Prupe.7G211400_v2.0.a1

At4g29660-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014011
Physical Location & Seq
Forward (+)
19323626 .. 19325231
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G211400.1

Sequence Viewer

Length: 291 bp
ATGACGAGCTATGTATGGAGGAAATATGCAGACTATATATACACAAAGTGGGAAAGAATGATTCTTTGGACCATGGTTGAGCCTTACAGCAGACCCAAATCGTTTACACCCTTGGTCACTATCTATGTAGCCGCTTTCTACACTGGGATCGTTGGCTCTGCTATCACTGAGCAGCTATACAAGGAGAAATACTGGGAGGATCATCCTGGCCAGGCAGTGCCTCTTATGAAGCCAAAGTTTTATGGAGGGCCGTGGAGGGTACAGCAAGGAGAGGTCCCAGCCAGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.35

Weight (kDa)

9.13

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29660
fragaria_vesca FvH4_1g07240 FvH4_1g24820
malus_domestica MD02G1077000.v1.1 MD15G1205700.v1.1
prunus_persica Prupe.7G211400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0093151
rosa_laevigata RLG00000015678
rosa_multiflora Rmu_sc0003724.1_g000004
rosa_roxburghii Rroxscaffold_2G00110150 Rroxscaffold_7G00185150
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078900 Rh2BG080200 Rh2CG082400 Rh2DG077900
rosa_wichuraiana Rw2G006760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 132
AclWI GGATC 2 cut(s) 155, 207
AcoI YGGCCR 1 cut(s) 208
AdeI CACNNNGTG 1 cut(s) 48
AfaI GTAC 1 cut(s) 261
AjnI CCWGG 2 cut(s) 205, 210
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 2 cut(s) 9, 175
AluI AGCT 2 cut(s) 9, 175
AlwI GGATC 2 cut(s) 155, 207
AoxI GGCC 2 cut(s) 208, 248
ApeKI GCWGC 1 cut(s) 172
AspS9I GGNCC 3 cut(s) 69, 248, 274
AvaII GGWCC 2 cut(s) 69, 274
BalI TGGCCA 1 cut(s) 210
BbvI GCAGC 1 cut(s) 184
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 2 cut(s) 207, 212
BisI GCNGC 2 cut(s) 132, 173
BlsI GCNGC 2 cut(s) 133, 174
Bme1390I CCNGG 2 cut(s) 207, 212
Bme18I GGWCC 2 cut(s) 69, 274
BmgT120I GGNCC 3 cut(s) 69, 248, 274
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 207, 212
BmrI ACTGGG 2 cut(s) 153, 202
BmuI ACTGGG 2 cut(s) 153, 202
BsaJI CCNNGG 3 cut(s) 72, 111, 251
Bse1I ACTGG 3 cut(s) 148, 197, 282
BseBI CCWGG 2 cut(s) 207, 212
BseDI CCNNGG 3 cut(s) 72, 111, 251
BseGI GGATG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 3 cut(s) 148, 197, 282
BseXI GCAGC 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 277
BshFI GGCC 2 cut(s) 210, 250
BslFI GGGAC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 2 cut(s) 210, 250
Bsp143I GATC 2 cut(s) 147, 199
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 1 cut(s) 132
BspANI GGCC 2 cut(s) 210, 250
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 2 cut(s) 155, 207
BsrI ACTGG 3 cut(s) 148, 197, 282
BssECI CCNNGG 3 cut(s) 72, 111, 251
BssMI GATC 2 cut(s) 147, 199
BssT1I CCWWGG 2 cut(s) 72, 111
Bst2UI CCWGG 2 cut(s) 207, 212
BstDEI CTNAG 1 cut(s) 168
BstDSI CCRYGG 2 cut(s) 72, 251
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 2 cut(s) 150, 202
BstMBI GATC 2 cut(s) 147, 199
BstNI CCWGG 2 cut(s) 207, 212
BstSCI CCNGG 2 cut(s) 205, 210
BstV1I GCAGC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 210, 250
BtgI CCRYGG 2 cut(s) 72, 251
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 3 cut(s) 141, 165, 222
Cfr13I GGNCC 3 cut(s) 69, 248, 274
Csp6I GTAC 1 cut(s) 260
CviAII CATG 1 cut(s) 73
CviJI RGCY 9 cut(s) 9, 82, 131, 156, 175, 210, 232, 250, 281
CviKI_1 RGCY 9 cut(s) 9, 82, 131, 156, 175, 210, 232, 250, 281
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 149, 201
DpnII GATC 2 cut(s) 147, 199
DraIII CACNNNGTG 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 72, 111
Eco47I GGWCC 2 cut(s) 69, 274
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 205, 210
EcoT14I CCWWGG 2 cut(s) 72, 111
ErhI CCWWGG 2 cut(s) 72, 111
FaeI CATG 1 cut(s) 76
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 132, 173
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 132, 173
GluI GCNGC 2 cut(s) 132, 173
GsaI CCCAGC 1 cut(s) 281
HaeIII GGCC 2 cut(s) 210, 250
Hin1II CATG 1 cut(s) 76
HinfI GANTC 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 2 cut(s) 147, 199
LpnPI CCDG 6 cut(s) 129, 178, 192, 197, 219, 224
Lsp1109I GCAGC 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 149, 201
MboI GATC 2 cut(s) 147, 199
MlsI TGGCCA 1 cut(s) 210
MluNI TGGCCA 1 cut(s) 210
MnlI CCTC 6 cut(s) 12, 190, 231, 239, 249, 265
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 207, 212
MvaI CCWGG 2 cut(s) 207, 212
NcoI CCATGG 1 cut(s) 72
NdeII GATC 2 cut(s) 147, 199
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 133, 174
PpuMI RGGWCCY 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 205, 210
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 2 cut(s) 205, 210
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 3 cut(s) 69, 248, 274
PspPPI RGGWCCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SatI GCNGC 2 cut(s) 132, 173
Sau3AI GATC 2 cut(s) 147, 199
Sau96I GGNCC 3 cut(s) 69, 248, 274
ScrFI CCNGG 2 cut(s) 207, 212
SetI ASST 3 cut(s) 11, 177, 276
SinI GGWCC 2 cut(s) 69, 274
SsiI CCGC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 205, 210
StyI CCWWGG 2 cut(s) 72, 111
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 61
TscAI CASTG 3 cut(s) 148, 172, 222
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 3 cut(s) 148, 172, 222
VpaK11BI GGWCC 2 cut(s) 69, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.