AT4G29905

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
14626921 .. 14627631
711 bp
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UTR
Exon/CDS
Intron
AT4G29905.1

Sequence Viewer

Length: 204 bp
ATGTGTTTGGAAGTTGTGTATCATGAAGAGAAGACGGAGCTTGGTCGGCAACAAGCACCAGGGATGTGTCCTTATTGCGGCGGAAAAGTATCGGCGGTGGATATAGAGACGAAGTGGTTGTTCTGTTTCTTACCACTTTGTTTCAAGGTCAAACGCAAATACTCATGTTCTTCGTGCGAGCGTCATCTCGTCTTGTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.82

Weight (kDa)

8.18

Isoelectric Point (pI)

59.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29905 AT5G57123
fragaria_vesca FvH4_4g07010
malus_domestica MD13G1240400.v1.1 MD16G1246800.v1.1
prunus_persica Prupe.1G073400_v2.0.a1
pyrus_communis pycom13g21270
rosa_chinensis RchiOBHm_Chr4g0399141
rosa_laevigata RLG00000009296
rosa_multiflora Rmu_sc0004767.1_g000001
rosa_roxburghii Rroxscaffold_5G00344100
rosa_samantha Rh4CG100400
rosa_wichuraiana Rw4G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 78, 81, 95
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 101
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BspACI CCGC 3 cut(s) 78, 81, 95
BspHI TCATGA 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 179
BstF5I GGATG 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 179
CciI TCATGA 1 cut(s) 22
CseI GACGC 1 cut(s) 170
CviAII CATG 2 cut(s) 23, 165
CviJI RGCY 1 cut(s) 40
CviKI_1 RGCY 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 2 cut(s) 26, 168
FaiI YATR 3 cut(s) 24, 104, 166
FatI CATG 2 cut(s) 22, 164
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
HgaI GACGC 1 cut(s) 170
Hin1II CATG 2 cut(s) 26, 168
Hpy188III TCNNGA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Hsp92II CATG 2 cut(s) 26, 168
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 2 cut(s) 45, 72
MboII GAAGA 3 cut(s) 38, 43, 162
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 46
NlaIII CATG 2 cut(s) 26, 168
PagI TCATGA 1 cut(s) 22
PkrI GCNGC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
SatI GCNGC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 60
SetI ASST 2 cut(s) 42, 150
SsiI CCGC 3 cut(s) 78, 81, 95
StyD4I CCNGG 1 cut(s) 58
TauI GCSGC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.