Rmu_sc0004767.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004767.1
OG0017064
Physical Location & Seq
Forward (+)
1 .. 1430
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004767.1_g000001.1.cds

Sequence Viewer

Length: 215 bp
gcaggagaaaaatgtggttggtttatgtgtgtgatgaggaagagaaggaattgggaaggcaacaagctcctgggtcctgtcctcactgtggaggcaaagtagaagctgtggatgttgagtctcagtggaagttttgctttctccccatgtgtttcaagatcaagaggaagtacttctgttctctctgctccaggcgcttggtgctgtactactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.37

Weight (kDa)

8.92

Isoelectric Point (pI)

68.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29905 AT5G57123
fragaria_vesca FvH4_4g07010
malus_domestica MD13G1240400.v1.1 MD16G1246800.v1.1
prunus_persica Prupe.1G073400_v2.0.a1
pyrus_communis pycom13g21270
rosa_chinensis RchiOBHm_Chr4g0399141
rosa_laevigata RLG00000009296
rosa_multiflora Rmu_sc0004767.1_g000001
rosa_roxburghii Rroxscaffold_5G00344100
rosa_samantha Rh4CG100400
rosa_wichuraiana Rw4G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 172, 208
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 1 cut(s) 156
AjnI CCWGG 2 cut(s) 69, 190
AluBI AGCT 2 cut(s) 67, 106
AluI AGCT 2 cut(s) 67, 106
Alw26I GTCTC 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 71, 192
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 198
BmcAI AGTACT 1 cut(s) 172
Bme1390I CCNGG 2 cut(s) 71, 192
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 2 cut(s) 71, 192
BpmI CTGGAG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseBI CCWGG 2 cut(s) 71, 192
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 158
Bst2UI CCWGG 2 cut(s) 71, 192
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 158
BstMWI GCNNNNNNNGC 2 cut(s) 194, 201
BstNI CCWGG 2 cut(s) 71, 192
BstSCI CCNGG 2 cut(s) 69, 190
BstXI CCANNNNNNTGG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 84, 130
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 171, 207
CviAII CATG 1 cut(s) 147
CviJI RGCY 2 cut(s) 67, 106
CviKI_1 RGCY 2 cut(s) 67, 106
CviQI GTAC 2 cut(s) 171, 207
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 69, 190
FaeI CATG 1 cut(s) 150
FaiI YATR 2 cut(s) 26, 148
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FatI CATG 1 cut(s) 146
FokI GGATG 1 cut(s) 124
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 198
HhaI GCGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 150
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HinfI GANTC 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 156, 162
HpyAV CCTTC 2 cut(s) 39, 50
HpyCH4III ACNGT 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 201
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 1 cut(s) 150
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 72, 193
LpnPI CCDG 5 cut(s) 56, 83, 90, 177, 204
MaeI CTAG 1 cut(s) 213
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 1 cut(s) 52
MluCI AATT 1 cut(s) 49
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 4 cut(s) 30, 85, 92, 158
MroXI GAANNNNTTC 1 cut(s) 172
MspR9I CCNGG 2 cut(s) 71, 192
MvaI CCWGG 2 cut(s) 71, 192
MwoI GCNNNNNNNGC 2 cut(s) 194, 201
NdeII GATC 1 cut(s) 158
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 172
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 69, 190
PspGI CCWGG 2 cut(s) 69, 190
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
RsaI GTAC 2 cut(s) 172, 208
RsaNI GTAC 2 cut(s) 171, 207
Sau3AI GATC 1 cut(s) 158
Sau96I GGNCC 1 cut(s) 74
ScaI AGTACT 1 cut(s) 172
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 2 cut(s) 71, 192
SetI ASST 2 cut(s) 69, 108
SinI GGWCC 1 cut(s) 74
Sse9I AATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 69, 190
TaaI ACNGT 1 cut(s) 88
TasI AATT 1 cut(s) 49
TatI WGTACW 2 cut(s) 170, 206
TscAI CASTG 2 cut(s) 91, 130
TspRI CASTG 2 cut(s) 91, 130
VpaK11BI GGWCC 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 1 cut(s) 213
ZrmI AGTACT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.