RchiOBHm_Chr4g0399141

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
16252271 .. 16253681
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37127

Sequence Viewer

Length: 204 bp
ATGTGGTTGGTTTATGTGTGTGATGAGGAAGAGAAGGAATTGGGAAGGCAACAAGCTCCTGGGTCCTGTCCTCACTGTGGAGGCAAAGTAGAAGCTGTGGATGTTGAGTCTCAGTGGAAGTTTTGCTTTCTCCCCATGTGTTTCAAGATCAAGAGGAAGTACTTCTGTTCCCTCTGCTCCAGGCGCTTGGTGTTGTACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.93

Weight (kDa)

8.18

Isoelectric Point (pI)

57.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29905 AT5G57123
fragaria_vesca FvH4_4g07010
malus_domestica MD13G1240400.v1.1 MD16G1246800.v1.1
prunus_persica Prupe.1G073400_v2.0.a1
pyrus_communis pycom13g21270
rosa_chinensis RchiOBHm_Chr4g0399141
rosa_laevigata RLG00000009296
rosa_multiflora Rmu_sc0004767.1_g000001
rosa_roxburghii Rroxscaffold_5G00344100
rosa_samantha Rh4CG100400
rosa_wichuraiana Rw4G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 161, 197
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 2 cut(s) 58, 179
AluBI AGCT 2 cut(s) 56, 95
AluI AGCT 2 cut(s) 56, 95
Alw26I GTCTC 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 63
AvaII GGWCC 1 cut(s) 63
BciT130I CCWGG 2 cut(s) 60, 181
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 187
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 60, 181
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 60, 181
BpmI CTGGAG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseBI CCWGG 2 cut(s) 60, 181
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 60, 181
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 2 cut(s) 60, 181
BstSCI CCNGG 2 cut(s) 58, 179
BstXI CCANNNNNNTGG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 73, 119
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 160, 196
CviAII CATG 1 cut(s) 136
CviJI RGCY 2 cut(s) 56, 95
CviKI_1 RGCY 2 cut(s) 56, 95
CviQI GTAC 2 cut(s) 160, 196
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 63
EcoRII CCWGG 2 cut(s) 58, 179
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 15, 137
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 1 cut(s) 135
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 202
GlaI GCGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 187
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 145, 151
HpyAV CCTTC 2 cut(s) 28, 39
HpyCH4III ACNGT 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 61, 182
LpnPI CCDG 5 cut(s) 45, 72, 79, 166, 193
MaeI CTAG 1 cut(s) 202
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 41
MluCI AATT 1 cut(s) 38
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 5 cut(s) 19, 74, 81, 147, 182
MroXI GAANNNNTTC 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 60, 181
MvaI CCWGG 2 cut(s) 60, 181
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 161
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 58, 179
PspGI CCWGG 2 cut(s) 58, 179
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 63
PspPPI RGGWCCY 1 cut(s) 63
RsaI GTAC 2 cut(s) 161, 197
RsaNI GTAC 2 cut(s) 160, 196
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 63
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 60, 181
SetI ASST 2 cut(s) 58, 97
SinI GGWCC 1 cut(s) 63
Sse9I AATT 1 cut(s) 38
SspMI CTAG 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 58, 179
TaaI ACNGT 1 cut(s) 77
TasI AATT 1 cut(s) 38
TatI WGTACW 2 cut(s) 159, 195
TscAI CASTG 2 cut(s) 80, 119
TspRI CASTG 2 cut(s) 80, 119
VpaK11BI GGWCC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 202
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.