RLG00000009296

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017064
Physical Location & Seq
Forward (+)
50391741 .. 50393348
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009296

Sequence Viewer

Length: 327 bp
ATGGGACATGGACTTCAATCGGGCAATTGTGTCTTTAATCCAAACTCACCAAAAAGGGAAAACAAATTGAGACCGGTGGGTGTGGTCACCCGCGCACATCCAACAGTGACAGGCAGGAGAAAAATGTGGTTGGTTTATGTGTGTGATGAGGAGGAGAAGGAATTGGGAAGGCAACAAGCTCCTGGGTCCTGTCCTCACTGTGGAGGCAAAGTAGAAGCTGTGGATGTTGAGTCTCAGTGGAAGTTTTGCTTTCTCCCCATGTGTTTCAAGATCAAGAGGAAGTACTTCTGTTCTCTCTGCTCCAGGCGCTTGGTCTTGTACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.41

Weight (kDa)

9.36

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29905 AT5G57123
fragaria_vesca FvH4_4g07010
malus_domestica MD13G1240400.v1.1 MD16G1246800.v1.1
prunus_persica Prupe.1G073400_v2.0.a1
pyrus_communis pycom13g21270
rosa_chinensis RchiOBHm_Chr4g0399141
rosa_laevigata RLG00000009296
rosa_multiflora Rmu_sc0004767.1_g000001
rosa_roxburghii Rroxscaffold_5G00344100
rosa_samantha Rh4CG100400
rosa_wichuraiana Rw4G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 91
AfaI GTAC 2 cut(s) 284, 320
AfiI CCNNNNNNNGG 1 cut(s) 200
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 2 cut(s) 17, 268
AjnI CCWGG 2 cut(s) 181, 302
AluBI AGCT 2 cut(s) 179, 218
AluI AGCT 2 cut(s) 179, 218
Alw26I GTCTC 2 cut(s) 64, 237
AsiGI ACCGGT 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 2 cut(s) 95, 309
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 39, 79
AvaII GGWCC 1 cut(s) 186
BciT130I CCWGG 2 cut(s) 183, 304
BcoDI GTCTC 2 cut(s) 64, 237
BfaI CTAG 1 cut(s) 325
BfoI RGCGCY 1 cut(s) 310
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 183, 304
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 183, 304
BpmI CTGGAG 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 73
BseBI CCWGG 2 cut(s) 183, 304
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 97, 229
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 248
BseRI GAGGAG 2 cut(s) 164, 167
Bsh1236I CGCG 1 cut(s) 93
BshTI ACCGGT 1 cut(s) 73
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 2 cut(s) 64, 237
BsmFI GGGAC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 183, 304
Bst4CI ACNGT 2 cut(s) 106, 200
BstDEI CTNAG 1 cut(s) 234
BstEII GGTNACC 1 cut(s) 85
BstF5I GGATG 2 cut(s) 97, 229
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 2 cut(s) 95, 309
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 2 cut(s) 64, 237
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 2 cut(s) 183, 304
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 181, 302
BstUI CGCG 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 310
BtsCI GGATG 2 cut(s) 97, 229
BtsIMutI CAGTG 3 cut(s) 111, 196, 242
CfoI GCGC 2 cut(s) 95, 309
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 283, 319
CspAI ACCGGT 1 cut(s) 73
CviAII CATG 2 cut(s) 8, 259
CviJI RGCY 2 cut(s) 179, 218
CviKI_1 RGCY 2 cut(s) 179, 218
CviQI GTAC 2 cut(s) 283, 319
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 186
EcoO65I GGTNACC 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 181, 302
FaeI CATG 2 cut(s) 11, 262
FaiI YATR 3 cut(s) 9, 138, 260
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 7, 258
FauI CCCGC 1 cut(s) 98
FokI GGATG 2 cut(s) 84, 236
FspBI CTAG 1 cut(s) 325
GlaI GCGC 2 cut(s) 94, 308
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 310
HapII CCGG 1 cut(s) 74
HhaI GCGC 2 cut(s) 95, 309
Hin1II CATG 2 cut(s) 11, 262
Hin6I GCGC 2 cut(s) 93, 307
HinP1I GCGC 2 cut(s) 93, 307
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 74
HphI GGTGA 2 cut(s) 39, 79
Hpy188III TCNNGA 2 cut(s) 268, 274
HpyAV CCTTC 2 cut(s) 151, 162
HpyCH4III ACNGT 2 cut(s) 106, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 2 cut(s) 11, 262
HspAI GCGC 2 cut(s) 93, 307
Kzo9I GATC 1 cut(s) 270
LmnI GCTCC 2 cut(s) 184, 305
LpnPI CCDG 8 cut(s) 87, 96, 100, 168, 195, 202, 289, 316
MaeI CTAG 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 85, 106
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MfeI CAATTG 1 cut(s) 25
MluCI AATT 3 cut(s) 25, 65, 161
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 5 cut(s) 142, 145, 197, 204, 270
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 1 cut(s) 36
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 2 cut(s) 183, 304
MunI CAATTG 1 cut(s) 25
MvaI CCWGG 2 cut(s) 183, 304
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeII GATC 1 cut(s) 270
NlaIII CATG 2 cut(s) 11, 262
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 2 cut(s) 85, 106
PdmI GAANNNNTTC 1 cut(s) 284
PinAI ACCGGT 1 cut(s) 73
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 181, 302
PspEI GGTNACC 1 cut(s) 85
PspGI CCWGG 2 cut(s) 181, 302
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 186
PspPPI RGGWCCY 1 cut(s) 186
RsaI GTAC 2 cut(s) 284, 320
RsaNI GTAC 2 cut(s) 283, 319
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 186
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 183, 304
SetI ASST 2 cut(s) 181, 220
SinI GGWCC 1 cut(s) 186
Sse9I AATT 3 cut(s) 25, 65, 161
SsiI CCGC 1 cut(s) 91
SspMI CTAG 1 cut(s) 325
StyD4I CCNGG 2 cut(s) 181, 302
TaaI ACNGT 2 cut(s) 106, 200
TasI AATT 3 cut(s) 25, 65, 161
TatI WGTACW 2 cut(s) 282, 318
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 3 cut(s) 111, 203, 242
TseFI GTSAC 2 cut(s) 85, 106
Tsp45I GTSAC 2 cut(s) 85, 106
TspRI CASTG 3 cut(s) 111, 203, 242
VpaK11BI GGWCC 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 325
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.