MD16G1246800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0017064
Physical Location & Seq
Reverse (-)
27340156 .. 27340359
204 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1246800.v1.1.491

Sequence Viewer

Length: 204 bp
ATGTGGCTGGTGTACGTGTGCGACGAGGAGGAGAAGGAGCTGGGGAGGCAGCAAGCTCCTGGAGCATGCCCGTACTGCGGAGGAAAAGTGCAGGCGGTGGATGTCGAGGCTCAGCGGAAGCTTTGCTTTCTGCCCTTGTGCTTCAAGATCAAGAGGAAGTACTTCTGTACTCTCTGCTCCAGGCGCTTGGTCCTGTACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.86

Weight (kDa)

8.73

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29905 AT5G57123
fragaria_vesca FvH4_4g07010
malus_domestica MD13G1240400.v1.1 MD16G1246800.v1.1
prunus_persica Prupe.1G073400_v2.0.a1
pyrus_communis pycom13g21270
rosa_chinensis RchiOBHm_Chr4g0399141
rosa_laevigata RLG00000009296
rosa_multiflora Rmu_sc0004767.1_g000001
rosa_roxburghii Rroxscaffold_5G00344100
rosa_samantha Rh4CG100400
rosa_wichuraiana Rw4G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 78, 95, 115
AfaI GTAC 5 cut(s) 14, 74, 161, 169, 197
AfiI CCNNNNNNNGG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 2 cut(s) 58, 179
AluBI AGCT 3 cut(s) 40, 56, 121
AluI AGCT 3 cut(s) 40, 56, 121
ApeKI GCWGC 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 61
BciT130I CCWGG 2 cut(s) 60, 181
BfaI CTAG 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 51
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 60, 181
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmrFI CCNGG 2 cut(s) 60, 181
BpmI CTGGAG 2 cut(s) 81, 163
Bpu1102I GCTNAGC 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseBI CCWGG 2 cut(s) 60, 181
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 2 cut(s) 41, 44
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 77
Bsp143I GATC 1 cut(s) 147
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 3 cut(s) 78, 95, 115
BspCNI CTCAG 1 cut(s) 124
BssMI GATC 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 60, 181
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 54, 67, 93
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 46, 62, 75, 183
BstNI CCWGG 2 cut(s) 60, 181
BstNSI RCATGY 1 cut(s) 69
BstSCI CCNGG 2 cut(s) 58, 179
BstV1I GCAGC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 3 cut(s) 54, 67, 93
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 5 cut(s) 13, 73, 160, 168, 196
CviAII CATG 1 cut(s) 66
CviJI RGCY 5 cut(s) 7, 40, 56, 110, 121
CviKI_1 RGCY 5 cut(s) 7, 40, 56, 110, 121
CviQI GTAC 5 cut(s) 13, 73, 160, 168, 196
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 58, 179
FaeI CATG 1 cut(s) 69
FaiI YATR 1 cut(s) 67
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 1 cut(s) 202
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 50
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 2 cut(s) 81, 163
HaeII RGCGCY 1 cut(s) 187
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 69
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 145, 151
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 62, 75, 183
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 69
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 4 cut(s) 37, 61, 62, 182
LpnPI CCDG 6 cut(s) 26, 45, 72, 77, 166, 193
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 1 cut(s) 202
MaeII ACGT 1 cut(s) 15
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MnlI CCTC 6 cut(s) 19, 22, 39, 74, 100, 147
MroXI GAANNNNTTC 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 115
MspR9I CCNGG 2 cut(s) 60, 181
MvaI CCWGG 2 cut(s) 60, 181
MwoI GCNNNNNNNGC 4 cut(s) 46, 62, 75, 183
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 69
NspI RCATGY 1 cut(s) 69
PaeI GCATGC 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 58
PkrI GCNGC 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 58, 179
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 58, 179
PspPI GGNCC 1 cut(s) 190
RsaI GTAC 5 cut(s) 14, 74, 161, 169, 197
RsaNI GTAC 5 cut(s) 13, 73, 160, 168, 196
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 60, 181
SetI ASST 4 cut(s) 18, 42, 58, 123
SinI GGWCC 1 cut(s) 190
SphI GCATGC 1 cut(s) 69
SsiI CCGC 3 cut(s) 78, 95, 115
SspMI CTAG 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 58, 179
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 105
TatI WGTACW 3 cut(s) 159, 167, 195
TseI GCWGC 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 190
XceI RCATGY 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 202
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.