MD13G1240400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017064
Physical Location & Seq
Forward (+)
24899625 .. 24899828
204 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1240400.v1.1.491

Sequence Viewer

Length: 204 bp
ATGTGGCTGGCGTGCGTCTGCGACGAGGAAGAGAAGGAGCTGGGGAGGCAGCAAGCTCCTGGATCATGCCCGCACTGCCGAGGCAAAGTGCAAGCGGTGGATGTCGAGGCTCAACGGAAGCTTTGCTTTCTGCCCTTGTGCTTCAAGATTAAGAGGAAGTACTTCTGTACTCTCTGCTCCAGGCGCTTGGTCCTGGACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.81

Weight (kDa)

8.69

Isoelectric Point (pI)

58.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29905 AT5G57123
fragaria_vesca FvH4_4g07010
malus_domestica MD13G1240400.v1.1 MD16G1246800.v1.1
prunus_persica Prupe.1G073400_v2.0.a1
pyrus_communis pycom13g21270
rosa_chinensis RchiOBHm_Chr4g0399141
rosa_laevigata RLG00000009296
rosa_multiflora Rmu_sc0004767.1_g000001
rosa_roxburghii Rroxscaffold_5G00344100
rosa_samantha Rh4CG100400
rosa_wichuraiana Rw4G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 71, 95
AclWI GGATC 1 cut(s) 70
AfaI GTAC 2 cut(s) 161, 169
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 3 cut(s) 58, 179, 192
AluBI AGCT 3 cut(s) 40, 56, 121
AluI AGCT 3 cut(s) 40, 56, 121
AlwI GGATC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 61
BciT130I CCWGG 3 cut(s) 60, 181, 194
BfaI CTAG 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 3 cut(s) 60, 181, 194
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmrFI CCNGG 3 cut(s) 60, 181, 194
BpmI CTGGAG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 79
BseBI CCWGG 3 cut(s) 60, 181, 194
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 62
BspACI CCGC 2 cut(s) 71, 95
BspPI GGATC 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 62
Bst2UI CCWGG 3 cut(s) 60, 181, 194
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 5 cut(s) 9, 13, 54, 71, 93
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstMWI GCNNNNNNNGC 3 cut(s) 46, 75, 183
BstNI CCWGG 3 cut(s) 60, 181, 194
BstSCI CCNGG 3 cut(s) 58, 179, 192
BstV1I GCAGC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 5 cut(s) 9, 13, 54, 71, 93
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 160, 168
CviAII CATG 1 cut(s) 66
CviJI RGCY 5 cut(s) 7, 40, 56, 110, 121
CviKI_1 RGCY 5 cut(s) 7, 40, 56, 110, 121
CviQI GTAC 2 cut(s) 160, 168
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 190
EcoRII CCWGG 3 cut(s) 58, 179, 192
FaeI CATG 1 cut(s) 69
FaiI YATR 1 cut(s) 67
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 1 cut(s) 65
FauI CCCGC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 1 cut(s) 202
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 50
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 187
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 69
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 75, 183
Hsp92II CATG 1 cut(s) 69
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 62
LmnI GCTCC 3 cut(s) 37, 61, 182
LpnPI CCDG 6 cut(s) 26, 45, 72, 166, 179, 193
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 1 cut(s) 202
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 1 cut(s) 41
MnlI CCTC 5 cut(s) 19, 39, 74, 100, 147
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 1 cut(s) 150
MspR9I CCNGG 3 cut(s) 60, 181, 194
MvaI CCWGG 3 cut(s) 60, 181, 194
MwoI GCNNNNNNNGC 3 cut(s) 46, 75, 183
NdeII GATC 1 cut(s) 62
NlaIII CATG 1 cut(s) 69
NmeAIII GCCGAG 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 161
PfoI TCCNGGA 2 cut(s) 58, 192
PkrI GCNGC 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 58, 179, 192
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 3 cut(s) 58, 179, 192
PspPI GGNCC 1 cut(s) 190
RsaI GTAC 2 cut(s) 161, 169
RsaNI GTAC 2 cut(s) 160, 168
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 161
ScrFI CCNGG 3 cut(s) 60, 181, 194
SetI ASST 3 cut(s) 42, 58, 123
SinI GGWCC 1 cut(s) 190
SsiI CCGC 2 cut(s) 71, 95
SspMI CTAG 1 cut(s) 202
StyD4I CCNGG 3 cut(s) 58, 179, 192
TaqI TCGA 1 cut(s) 105
TatI WGTACW 2 cut(s) 159, 167
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 80
TseI GCWGC 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 202
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.