Rh4CG100400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017064
Physical Location & Seq
Reverse (-)
18498019 .. 18501793
3775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG100400.1

Sequence Viewer

Length: 426 bp
ATGTGGTTGGTTTATGTGTGTGATGAGGAAGAGAAGGAATTGGGAAGGCAACAAGCTCCTGGGTCCTGTCCTCACTGTGGAGGCAAAGTAGAAGCTGTGGATGTTGAGTCTCAGTGGAAGTTTTGCTTTCTCCCCATGTGTTTCAAGATCAAGAGGAAGTACTTCTGTTCTCTCTGCTCCAGGCGCTTGTACAAGGCAGCGGCAGTGGGATGTGTTCCTGGGCAATTTGGATCGGTGATGGTCCCGGGGTCTCGATGCTTGGTGCTGTATGAGCAGGAAGATCTGGTGGTCGCCGCCGGTTGGGGTGCGGACTGGAGCTTCGGGAGGTGGCCTAGGGTGGATTCTCGACCTCTGTTGCTGGCAGTCGAGGATTGTGATGGAGGTGGCGACGTCAACTACCTTAGCCTGGGGTTGACTGCGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.6

Weight (kDa)

5.41

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29905 AT5G57123
fragaria_vesca FvH4_4g07010
malus_domestica MD13G1240400.v1.1 MD16G1246800.v1.1
prunus_persica Prupe.1G073400_v2.0.a1
pyrus_communis pycom13g21270
rosa_chinensis RchiOBHm_Chr4g0399141
rosa_laevigata RLG00000009296
rosa_multiflora Rmu_sc0004767.1_g000001
rosa_roxburghii Rroxscaffold_5G00344100
rosa_samantha Rh4CG100400
rosa_wichuraiana Rw4G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AciI CCGC 3 cut(s) 200, 294, 308
AclWI GGATC 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 2 cut(s) 161, 191
AfiI CCNNNNNNNGG 3 cut(s) 77, 300, 406
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 4 cut(s) 58, 179, 217, 405
AluBI AGCT 3 cut(s) 56, 95, 318
AluI AGCT 3 cut(s) 56, 95, 318
Alw26I GTCTC 2 cut(s) 114, 255
AlwI GGATC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 197
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
Asp700I GAANNNNTTC 1 cut(s) 161
AspA2I CCTAGG 1 cut(s) 332
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 63, 241
AsuC2I CCSGG 2 cut(s) 245, 246
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 2 cut(s) 63, 241
AvrII CCTAGG 1 cut(s) 332
BbvI GCAGC 1 cut(s) 209
BccI CCATC 2 cut(s) 232, 371
BciT130I CCWGG 4 cut(s) 60, 181, 219, 407
BcnI CCSGG 2 cut(s) 245, 246
BcoDI GTCTC 2 cut(s) 114, 255
BfaI CTAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 187
BglII AGATCT 1 cut(s) 280
BisI GCNGC 3 cut(s) 198, 201, 294
BlnI CCTAGG 1 cut(s) 332
BlsI GCNGC 3 cut(s) 199, 202, 295
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 6 cut(s) 60, 181, 219, 245, 246, 407
Bme18I GGWCC 2 cut(s) 63, 241
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 63, 241
BmiI GGNNCC 2 cut(s) 64, 243
BmrFI CCNGG 6 cut(s) 60, 181, 219, 245, 246, 407
BmsI GCATC 1 cut(s) 245
BpmI CTGGAG 2 cut(s) 163, 334
Bpu10I CCTNAGC 1 cut(s) 401
BpuMI CCSGG 2 cut(s) 245, 246
BsaHI GRCGYC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 255
BsaJI CCNNGG 6 cut(s) 59, 218, 244, 245, 332, 406
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 300, 406
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 4 cut(s) 60, 181, 219, 407
BseDI CCNNGG 6 cut(s) 59, 218, 244, 245, 332, 406
BseGI GGATG 2 cut(s) 106, 215
BseLI CCNNNNNNNGG 3 cut(s) 77, 300, 406
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 1 cut(s) 331
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 2 cut(s) 245, 297
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 3 cut(s) 77, 300, 406
BsmAI GTCTC 2 cut(s) 114, 255
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 1 cut(s) 331
Bso31I GGTCTC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 3 cut(s) 147, 230, 280
BspACI CCGC 3 cut(s) 200, 294, 308
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 64, 243
BspPI GGATC 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 189
BsrI ACTGG 1 cut(s) 317
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 6 cut(s) 59, 218, 244, 245, 332, 406
BssMI GATC 3 cut(s) 147, 230, 280
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 332
Bst2UI CCWGG 4 cut(s) 60, 181, 219, 407
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 111, 401, 423
BstF5I GGATG 2 cut(s) 106, 215
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 3 cut(s) 150, 233, 283
BstMAI GTCTC 2 cut(s) 114, 255
BstMBI GATC 3 cut(s) 147, 230, 280
BstMWI GCNNNNNNNGC 2 cut(s) 183, 271
BstNI CCWGG 4 cut(s) 60, 181, 219, 407
BstSCI CCNGG 6 cut(s) 58, 179, 217, 243, 244, 405
BstV1I GCAGC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 2 cut(s) 106, 215
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 3 cut(s) 73, 119, 210
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 63, 241
Cfr9I CCCGGG 1 cut(s) 244
CseI GACGC 1 cut(s) 408
Csp6I GTAC 2 cut(s) 160, 190
CviAII CATG 1 cut(s) 136
CviJI RGCY 5 cut(s) 56, 95, 318, 331, 405
CviKI_1 RGCY 5 cut(s) 56, 95, 318, 331, 405
CviQI GTAC 2 cut(s) 160, 190
DdeI CTNAG 3 cut(s) 111, 401, 423
DpnI GATC 3 cut(s) 149, 232, 282
DpnII GATC 3 cut(s) 147, 230, 280
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 63, 241
Eco88I CYCGRG 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 63
EcoRII CCWGG 4 cut(s) 58, 179, 217, 405
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 1 cut(s) 139
FaiI YATR 3 cut(s) 15, 137, 270
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 1 cut(s) 227
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 198, 201, 294
FokI GGATG 2 cut(s) 113, 222
Fsp4HI GCNGC 3 cut(s) 198, 201, 294
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 185
GluI GCNGC 3 cut(s) 198, 201, 294
GsuI CTGGAG 2 cut(s) 163, 334
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 1 cut(s) 331
HapII CCGG 2 cut(s) 245, 297
HgaI GACGC 1 cut(s) 408
HhaI GCGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 2 cut(s) 394, 414
HindII GTYRAC 2 cut(s) 394, 414
HinfI GANTC 2 cut(s) 107, 341
HpaII CCGG 2 cut(s) 245, 297
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 394, 414
Hpy188III TCNNGA 5 cut(s) 145, 151, 252, 322, 345
Hpy8I GTNNAC 2 cut(s) 394, 414
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 2 cut(s) 28, 39
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 271
HpyF3I CTNAG 3 cut(s) 111, 401, 423
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 3 cut(s) 147, 230, 280
LmnI GCTCC 3 cut(s) 61, 182, 315
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 390
MalI GATC 3 cut(s) 149, 232, 282
MboI GATC 3 cut(s) 147, 230, 280
MboII GAAGA 2 cut(s) 41, 290
MflI RGATCY 1 cut(s) 280
MluCI AATT 2 cut(s) 38, 224
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 8 cut(s) 19, 74, 81, 147, 318, 360, 361, 374
MroXI GAANNNNTTC 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 245, 297
MspR9I CCNGG 6 cut(s) 60, 181, 219, 245, 246, 407
MvaI CCWGG 4 cut(s) 60, 181, 219, 407
MwoI GCNNNNNNNGC 2 cut(s) 183, 271
NciI CCSGG 2 cut(s) 245, 246
NdeII GATC 3 cut(s) 147, 230, 280
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 2 cut(s) 64, 243
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 341
PflFI GACNNNGTC 1 cut(s) 418
PkrI GCNGC 3 cut(s) 199, 202, 295
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 4 cut(s) 58, 179, 217, 405
PspGI CCWGG 4 cut(s) 58, 179, 217, 405
PspN4I GGNNCC 2 cut(s) 64, 243
PspPI GGNCC 2 cut(s) 63, 241
PspPPI RGGWCCY 1 cut(s) 63
PsuI RGATCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 418
RsaI GTAC 2 cut(s) 161, 191
RsaNI GTAC 2 cut(s) 160, 190
SatI GCNGC 3 cut(s) 198, 201, 294
Sau3AI GATC 3 cut(s) 147, 230, 280
Sau96I GGNCC 2 cut(s) 63, 241
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 6 cut(s) 60, 181, 219, 245, 246, 407
SetI ASST 8 cut(s) 58, 97, 320, 329, 352, 385, 393, 402
SfaNI GCATC 1 cut(s) 245
SinI GGWCC 2 cut(s) 63, 241
SmaI CCCGGG 1 cut(s) 246
Sse9I AATT 2 cut(s) 38, 224
SsiI CCGC 3 cut(s) 200, 294, 308
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 6 cut(s) 58, 179, 217, 243, 244, 405
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 393
TaqI TCGA 3 cut(s) 253, 346, 366
TasI AATT 2 cut(s) 38, 224
TatI WGTACW 2 cut(s) 159, 189
TauI GCSGC 2 cut(s) 203, 296
TfiI GAWTC 1 cut(s) 341
TscAI CASTG 3 cut(s) 80, 119, 210
TseI GCWGC 1 cut(s) 197
TspMI CCCGGG 1 cut(s) 244
TspRI CASTG 3 cut(s) 80, 119, 210
Tth111I GACNNNGTC 1 cut(s) 418
VpaK11BI GGWCC 2 cut(s) 63, 241
XmaI CCCGGG 1 cut(s) 244
XmaJI CCTAGG 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 333
ZraI GACGTC 1 cut(s) 391
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.