FvH4_4g07010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017064
Physical Location & Seq
Reverse (-)
6343988 .. 6347149
3162 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07010.t1

Sequence Viewer

Length: 1032 bp
ATGTGGTTGATTTATGTGTGTGATGAGGAAGAGAAGGAATTGGGAAGGCAACAAGCTCCAGGGTCATGTCCTCACTGTGGAGGCAAAGTAGAAGCTGTGGATGTTGAGGCTCAGTGGAAGTTTTGCTTTCTCCCCATGTGTTTCAAGATCAAGAGGAAGCCTTTTCAGTATACCTTATCAGCTTTTTATATGGAAGCGGAAGCTCTTAGAGCAGGAAGAGTTATAGAGGACTGCCAAAGGTATGTTGGTGCTTTTAATTTCTTTCATTTGCAACATGTTTGTCGTGAAGCAAATAGTGTGGCAAATAGATTAGCCCGCTTTGCTAGATGCAATAAGTTGGATGTTTTTAGTTTAGATAAGACACCTGTTATTATTCAGGATGTTCTCTATGAGGATCTTTGTAATAGTTTGTCTGAATTCGCTAAAAAGTTTTTTGCCTCATCTGACAACACGTCTATTAACACCGTCACCGTACAGCTTGTACATGAGCAATATCTATGTGAGTATGGTTCTTTTGATGAGGGTTTCCCTCGTCGATGGGAACGAAGGCCGGTGGCTGGTGAGATCAGAGTTGATGGGAGGCTTTCGCTTGATTCTTTCAAGTTGGCTATGGTGCTTGCCAAGTTAGTTTCCTTTACTCAATCTAGTACTTCATTTGCTACTGTATTGATGATTATTTGGGCTATTTGGATGAACCGCAATACTAAGGTTTGGGATAGTGAGGCAAAACCAACATCTGAGGCTGTTCCTTCTATTCTGGGTGGGTATGCTGAATACCATGAGGCACATGTCAGTAATAATGTGCCTATTCAGATGCCCATAGTTGGTTGGCAGAAACCTACTAGTGGTATGGTCAAACTTAATGTTGATGTTGTTTTTGATAATCCCAATAGTTTAATAGGAGTTGGGGATATCTTTTGGGATGCCAATATTGGAACCTTTTTGAGAGGTTTCCGGCATTCTTTATCTCATGCAGCCTCTGCATGTCATGCAGAACTTCAAACTAACATGTCATTTCCTGGACCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

38.83

Weight (kDa)

6.16

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29905 AT5G57123
fragaria_vesca FvH4_4g07010
malus_domestica MD13G1240400.v1.1 MD16G1246800.v1.1
prunus_persica Prupe.1G073400_v2.0.a1
pyrus_communis pycom13g21270
rosa_chinensis RchiOBHm_Chr4g0399141
rosa_laevigata RLG00000009296
rosa_multiflora Rmu_sc0004767.1_g000001
rosa_roxburghii Rroxscaffold_5G00344100
rosa_samantha Rh4CG100400
rosa_wichuraiana Rw4G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 170
AciI CCGC 3 cut(s) 197, 316, 697
AclWI GGATC 1 cut(s) 402
AcsI RAATTY 1 cut(s) 416
AfaI GTAC 3 cut(s) 474, 483, 649
AfiI CCNNNNNNNGG 4 cut(s) 77, 557, 824, 845
AflIII ACRYGT 4 cut(s) 274, 450, 787, 1008
AgsI TTSAA 3 cut(s) 145, 601, 1001
AhdI GACNNNNNGTC 1 cut(s) 451
AhlI ACTAGT 1 cut(s) 842
AjiI CACGTC 1 cut(s) 453
AjnI CCWGG 2 cut(s) 58, 1018
AluBI AGCT 5 cut(s) 56, 95, 182, 203, 478
AluI AGCT 5 cut(s) 56, 95, 182, 203, 478
AlwI GGATC 1 cut(s) 402
AlwNI CAGNNNCTG 1 cut(s) 980
AoxI GGCC 1 cut(s) 548
ApeKI GCWGC 1 cut(s) 974
ApoI RAATTY 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 1022
AsuHPI GGTGA 2 cut(s) 460, 572
AvaII GGWCC 1 cut(s) 1022
BbvI GCAGC 1 cut(s) 986
BccI CCATC 2 cut(s) 531, 569
BciT130I CCWGG 2 cut(s) 60, 1020
BcuI ACTAGT 1 cut(s) 842
BfaI CTAG 3 cut(s) 324, 645, 843
BisI GCNGC 1 cut(s) 975
BlsI GCNGC 1 cut(s) 976
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 60, 1020
Bme18I GGWCC 1 cut(s) 1022
BmeRI GACNNNNNGTC 1 cut(s) 451
BmgBI CACGTC 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 1022
BmiI GGNNCC 1 cut(s) 937
BmrFI CCNGG 2 cut(s) 60, 1020
BmsI GCATC 3 cut(s) 317, 804, 913
BpmI CTGGAG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 557, 824, 845
Bse118I RCCGGY 1 cut(s) 550
BseBI CCWGG 2 cut(s) 60, 1020
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 5 cut(s) 106, 346, 385, 696, 928
BseLI CCNNNNNNNGG 4 cut(s) 77, 557, 824, 845
BseMII CTCAG 2 cut(s) 125, 729
BseXI GCAGC 1 cut(s) 986
BshFI GGCC 1 cut(s) 550
BsiSI CCGG 2 cut(s) 551, 955
BslI CCNNNNNNNGG 4 cut(s) 77, 557, 824, 845
BsmI GAATGC 1 cut(s) 958
BsnI GGCC 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 481
Bsp143I GATC 3 cut(s) 147, 394, 564
BspACI CCGC 3 cut(s) 197, 316, 697
BspANI GGCC 1 cut(s) 550
BspCNI CTCAG 2 cut(s) 124, 730
BspLI GGNNCC 1 cut(s) 937
BspPI GGATC 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 550
BsrGI TGTACA 1 cut(s) 481
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 3 cut(s) 147, 394, 564
BssNAI GTATAC 1 cut(s) 171
Bst1107I GTATAC 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 60, 1020
Bst4CI ACNGT 4 cut(s) 77, 466, 472, 664
Bst6I CTCTTC 2 cut(s) 24, 211
BstAPI GCANNNNNTGC 2 cut(s) 980, 989
BstAUI TGTACA 1 cut(s) 481
BstC8I GCNNGC 2 cut(s) 316, 618
BstDEI CTNAG 4 cut(s) 111, 206, 705, 738
BstF5I GGATG 5 cut(s) 106, 346, 385, 696, 928
BstKTI GATC 3 cut(s) 150, 397, 567
BstMBI GATC 3 cut(s) 147, 394, 564
BstMWI GCNNNNNNNGC 4 cut(s) 209, 320, 980, 989
BstNI CCWGG 2 cut(s) 60, 1020
BstNSI RCATGY 4 cut(s) 278, 791, 987, 1012
BstSCI CCNGG 2 cut(s) 58, 1018
BstV1I GCAGC 1 cut(s) 986
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BstZ17I GTATAC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 550
BtrI CACGTC 1 cut(s) 453
BtsCI GGATG 5 cut(s) 106, 346, 385, 696, 928
BtsIMutI CAGTG 2 cut(s) 73, 119
Cac8I GCNNGC 2 cut(s) 316, 618
CaiI CAGNNNCTG 1 cut(s) 980
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 1022
Csp6I GTAC 3 cut(s) 473, 482, 648
CspCI CAANNNNNGTGG 2 cut(s) 279, 314
CviQI GTAC 3 cut(s) 473, 482, 648
DdeI CTNAG 4 cut(s) 111, 206, 705, 738
DpnI GATC 3 cut(s) 149, 396, 566
DpnII GATC 3 cut(s) 147, 394, 564
DriI GACNNNNNGTC 1 cut(s) 451
Eam1104I CTCTTC 2 cut(s) 24, 211
Eam1105I GACNNNNNGTC 1 cut(s) 451
EarI CTCTTC 2 cut(s) 24, 211
Eco32I GATATC 1 cut(s) 913
Eco47I GGWCC 1 cut(s) 1022
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 58, 1018
EcoRV GATATC 1 cut(s) 913
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FauI CCCGC 1 cut(s) 323
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 975
FokI GGATG 5 cut(s) 113, 353, 392, 703, 935
Fsp4HI GCNGC 1 cut(s) 975
FspBI CTAG 3 cut(s) 324, 645, 843
GluI GCNGC 1 cut(s) 975
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 1 cut(s) 550
HapII CCGG 2 cut(s) 551, 955
HinfI GANTC 1 cut(s) 593
HpaII CCGG 2 cut(s) 551, 955
HphI GGTGA 2 cut(s) 460, 572
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 6 cut(s) 415, 445, 569, 739, 813, 1031
Hpy188III TCNNGA 4 cut(s) 145, 151, 284, 377
Hpy8I GTNNAC 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 537
HpyAV CCTTC 4 cut(s) 28, 39, 540, 759
HpyCH4III ACNGT 4 cut(s) 77, 466, 472, 664
HpyCH4IV ACGT 1 cut(s) 452
HpyCH4V TGCA 5 cut(s) 271, 330, 974, 983, 992
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 320, 980, 989
HpyF3I CTNAG 4 cut(s) 111, 206, 705, 738
HpySE526I ACGT 1 cut(s) 452
Kzo9I GATC 3 cut(s) 147, 394, 564
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 986
LweI GCATC 3 cut(s) 317, 804, 913
MaeI CTAG 3 cut(s) 324, 645, 843
MaeII ACGT 1 cut(s) 452
MaeIII GTNAC 1 cut(s) 466
MalI GATC 3 cut(s) 149, 396, 566
MboI GATC 3 cut(s) 147, 394, 564
MboII GAAGA 2 cut(s) 41, 228
MflI RGATCY 1 cut(s) 394
MluCI AATT 3 cut(s) 38, 256, 416
MmeI TCCRAC 1 cut(s) 318
MseI TTAA 4 cut(s) 255, 459, 861, 896
MspI CCGG 2 cut(s) 551, 955
MspR9I CCNGG 2 cut(s) 60, 1020
Mva1269I GAATGC 1 cut(s) 958
MvaI CCWGG 2 cut(s) 60, 1020
MwoI GCNNNNNNNGC 4 cut(s) 209, 320, 980, 989
NdeII GATC 3 cut(s) 147, 394, 564
NlaIV GGNNCC 1 cut(s) 937
NmuCI GTSAC 1 cut(s) 466
NspI RCATGY 4 cut(s) 278, 791, 987, 1012
PciI ACATGT 3 cut(s) 274, 787, 1008
PcsI WCGNNNNNNNCGW 1 cut(s) 541
PctI GAATGC 1 cut(s) 958
PfeI GAWTC 1 cut(s) 593
PfoI TCCNGGA 1 cut(s) 1018
PkrI GCNGC 1 cut(s) 976
PscI ACATGT 3 cut(s) 274, 787, 1008
Psp6I CCWGG 2 cut(s) 58, 1018
PspGI CCWGG 2 cut(s) 58, 1018
PspN4I GGNNCC 1 cut(s) 937
PspPI GGNCC 1 cut(s) 1022
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 3 cut(s) 474, 483, 649
RsaNI GTAC 3 cut(s) 473, 482, 648
SaqAI TTAA 4 cut(s) 255, 459, 861, 896
SatI GCNGC 1 cut(s) 975
Sau3AI GATC 3 cut(s) 147, 394, 564
Sau96I GGNCC 1 cut(s) 1022
ScaI AGTACT 1 cut(s) 649
ScrFI CCNGG 2 cut(s) 60, 1020
SfaNI GCATC 3 cut(s) 317, 804, 913
SinI GGWCC 1 cut(s) 1022
SpeI ACTAGT 1 cut(s) 842
Sse9I AATT 3 cut(s) 38, 256, 416
SsiI CCGC 3 cut(s) 197, 316, 697
SspI AATATT 1 cut(s) 931
SspMI CTAG 3 cut(s) 324, 645, 843
StyD4I CCNGG 2 cut(s) 58, 1018
TaaI ACNGT 4 cut(s) 77, 466, 472, 664
TaiI ACGT 1 cut(s) 455
TaqI TCGA 1 cut(s) 535
TasI AATT 3 cut(s) 38, 256, 416
TatI WGTACW 2 cut(s) 481, 647
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 4 cut(s) 255, 459, 861, 896
Tru9I TTAA 4 cut(s) 255, 459, 861, 896
TscAI CASTG 2 cut(s) 80, 119
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 1 cut(s) 974
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 3 cut(s) 254, 642, 707
TspRI CASTG 2 cut(s) 80, 119
VpaK11BI GGWCC 1 cut(s) 1022
XapI RAATTY 1 cut(s) 416
XceI RCATGY 4 cut(s) 278, 791, 987, 1012
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 170
XspI CTAG 3 cut(s) 324, 645, 843
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.