Prupe.1G073400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017064
Physical Location & Seq
Reverse (-)
5233619 .. 5235729
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G073400.1

Sequence Viewer

Length: 204 bp
ATGTGGTTGGTGTATGTCTGTGATGAGGAAGAGAAGGAGCTGGGGAGGCAGCAAGCCCCTGGATCATGCCCACACTGTGGAGGCAAAGTGCAGGCTGTGGATGTTGAGGCCCAGTGGAAGTTTTGCTTTCTGCCCATGTGCTTCAAGATCAAGAGAAAGTATTTCTGCACTCTCTGTGCCAGGCGCTTGGTCTTGTACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.91

Weight (kDa)

8.51

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29905 AT5G57123
fragaria_vesca FvH4_4g07010
malus_domestica MD13G1240400.v1.1 MD16G1246800.v1.1
prunus_persica Prupe.1G073400_v2.0.a1
pyrus_communis pycom13g21270
rosa_chinensis RchiOBHm_Chr4g0399141
rosa_laevigata RLG00000009296
rosa_multiflora Rmu_sc0004767.1_g000001
rosa_roxburghii Rroxscaffold_5G00344100
rosa_samantha Rh4CG100400
rosa_wichuraiana Rw4G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 77
AclWI GGATC 1 cut(s) 70
AdeI CACNNNGTG 1 cut(s) 77
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 2 cut(s) 58, 179
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 1 cut(s) 70
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 61
BciT130I CCWGG 2 cut(s) 60, 181
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 2 cut(s) 60, 181
BmgT120I GGNCC 1 cut(s) 109
BmrFI CCNGG 2 cut(s) 60, 181
BmrI ACTGGG 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 2 cut(s) 60, 181
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 40
BsgI GTGCAG 2 cut(s) 110, 151
BshFI GGCC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 77
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 2 cut(s) 62, 147
BspANI GGCC 1 cut(s) 110
BspPI GGATC 1 cut(s) 70
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 62, 147
Bst2UI CCWGG 2 cut(s) 60, 181
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 54, 93
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 2 cut(s) 65, 150
BstMBI GATC 2 cut(s) 62, 147
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 2 cut(s) 60, 181
BstSCI CCNGG 2 cut(s) 58, 179
BstV1I GCAGC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 187
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 73, 119
Cac8I GCNNGC 2 cut(s) 54, 93
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 66, 136
CviJI RGCY 4 cut(s) 40, 56, 95, 110
CviKI_1 RGCY 4 cut(s) 40, 56, 95, 110
CviQI GTAC 1 cut(s) 196
DpnI GATC 2 cut(s) 64, 149
DpnII GATC 2 cut(s) 62, 147
DraIII CACNNNGTG 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 58, 179
FaeI CATG 2 cut(s) 69, 139
FaiI YATR 3 cut(s) 15, 67, 137
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 2 cut(s) 65, 135
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 50
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 50
GsaI CCCAGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 1 cut(s) 110
HhaI GCGC 1 cut(s) 186
Hin1II CATG 2 cut(s) 69, 139
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 145, 151
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 91, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Hsp92II CATG 2 cut(s) 69, 139
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 62, 147
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 7 cut(s) 26, 45, 72, 77, 125, 166, 193
Lsp1109I GCAGC 1 cut(s) 61
MalI GATC 2 cut(s) 64, 149
MboI GATC 2 cut(s) 62, 147
MboII GAAGA 1 cut(s) 41
MnlI CCTC 4 cut(s) 19, 39, 74, 100
MspR9I CCNGG 2 cut(s) 60, 181
MvaI CCWGG 2 cut(s) 60, 181
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 2 cut(s) 62, 147
NlaIII CATG 2 cut(s) 69, 139
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 58, 179
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 58, 179
PspPI GGNCC 1 cut(s) 109
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 62, 147
Sau96I GGNCC 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 60, 181
SetI ASST 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 58, 179
TaaI ACNGT 1 cut(s) 77
TatI WGTACW 1 cut(s) 195
TscAI CASTG 2 cut(s) 80, 119
TseI GCWGC 1 cut(s) 49
TspRI CASTG 2 cut(s) 80, 119
Van91I CCANNNNNTGG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.