AT4G30330

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006603
Physical Location & Seq
Reverse (-)
14836548 .. 14838149
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30330.1

Sequence Viewer

Length: 267 bp
ATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAACCCATTAATCTGATTTTCAGATTTCTCCAAAGTAAAGCTCGGATTCAGATTTGGCTTTTTGAGCAGAAAGATTTGAGGATTGAGGGACGAATTACTGGTTTTGATGAGTACATGAATTTGGTGCTGGATGAGGCAGAGGAAGTGAGCATCAAGAAGAAAACCAGAAAACCACTTGGTCGGATTTTGCTTAAAGGAGACAACATAACTCTCATGATGAACGCGGGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

88

Amino Acids

10.28

Weight (kDa)

9.99

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 19 - 84 2.7e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 257
AciI CCGC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 146
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 151
AseI ATTAAT 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 225
BmsI GCATC 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 11
BslFI GGGAC 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 11
BspACI CCGC 1 cut(s) 257
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 246
BsrI ACTGG 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 7, 259
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstUI CGCG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 7, 259
CciI TCATGA 1 cut(s) 246
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 148, 247
CviJI RGCY 2 cut(s) 74, 91
CviKI_1 RGCY 2 cut(s) 74, 91
CviQI GTAC 1 cut(s) 145
FaeI CATG 2 cut(s) 151, 250
FaiI YATR 4 cut(s) 29, 149, 239, 248
FaqI GGGAC 1 cut(s) 135
FatI CATG 2 cut(s) 147, 246
FauI CCCGC 1 cut(s) 250
FokI GGATG 1 cut(s) 176
Hin1II CATG 2 cut(s) 151, 250
HinfI GANTC 2 cut(s) 31, 79
Hpy188I TCNGA 6 cut(s) 21, 48, 56, 78, 84, 216
Hpy188III TCNNGA 2 cut(s) 187, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
Hsp92II CATG 2 cut(s) 151, 250
LpnPI CCDG 3 cut(s) 117, 146, 211
LweI GCATC 1 cut(s) 192
MboII GAAGA 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 2 cut(s) 126, 151
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 5 cut(s) 15, 105, 112, 160, 166
MseI TTAA 2 cut(s) 42, 225
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 151, 250
PagI TCATGA 1 cut(s) 246
PfeI GAWTC 1 cut(s) 79
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 42
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 2 cut(s) 42, 225
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 11
SetI ASST 1 cut(s) 76
SfaNI GCATC 1 cut(s) 192
SgeI CNNG 9 cut(s) 18, 87, 144, 160, 173, 199, 210, 221, 259
Sse9I AATT 2 cut(s) 126, 151
SsiI CCGC 1 cut(s) 257
TasI AATT 2 cut(s) 126, 151
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 2 cut(s) 42, 225
Tru9I TTAA 2 cut(s) 42, 225
TspDTI ATGAA 2 cut(s) 164, 266
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.