RchiOBHm_Chr4g0403921

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006603
Physical Location & Seq
Reverse (-)
23416576 .. 23419053
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37557

Sequence Viewer

Length: 267 bp
ATGGCGAGCACCAAAGTCCAGCGGATTATGACACAGCCTATTAACTTGATTTTCAGGTTCCTCCAAAGTAAAGCTCGGATTCAGATTTGGCTCTTTGAGCAGAAAGACGTCAGGATTGAAGGCCGCATTATTGGATTTGATGAGTACATGAATCTGGTTCTGGATGATGCAGAAGAAGTCAGCATCAAGAAAAACACCAGGAAGACATTAGGAAGGATTCTTCTTAAAGGTGACAACATTACTCTGATGATGAACACGGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

88

Amino Acids

10.29

Weight (kDa)

9.89

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 19 - 84 1.8e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 111
AciI CCGC 2 cut(s) 22, 124
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 11
AoxI GGCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 199
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 157, 192
BpiI GAAGAC 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 108
BseBI CCWGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 169
BshFI GGCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 11
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 11
BspACI CCGC 2 cut(s) 22, 124
BspANI GGCC 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 59
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 209
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 148
CviJI RGCY 4 cut(s) 37, 74, 91, 123
CviKI_1 RGCY 4 cut(s) 37, 74, 91, 123
CviQI GTAC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 197
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 29, 149
FatI CATG 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 124
HaeIII GGCC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 151
HinfI GANTC 3 cut(s) 79, 151, 217
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 3 cut(s) 78, 84, 246
Hpy188III TCNNGA 3 cut(s) 112, 161, 187
HpyAV CCTTC 2 cut(s) 113, 207
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 151
LpnPI CCDG 7 cut(s) 32, 40, 97, 140, 146, 184, 211
LweI GCATC 2 cut(s) 157, 192
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 230
MboII GAAGA 3 cut(s) 185, 212, 214
MhlI GDGCHC 1 cut(s) 11
MnlI CCTC 1 cut(s) 71
MseI TTAA 2 cut(s) 42, 225
MspA1I CMGCKG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 230
PfeI GAWTC 3 cut(s) 79, 151, 217
PkrI GCNGC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 59
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 2 cut(s) 42, 225
SatI GCNGC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 11
SetI ASST 4 cut(s) 59, 76, 111, 232
SfaNI GCATC 2 cut(s) 157, 192
SsiI CCGC 2 cut(s) 22, 124
StyD4I CCNGG 1 cut(s) 197
TaiI ACGT 1 cut(s) 111
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 3 cut(s) 79, 151, 217
Tru1I TTAA 2 cut(s) 42, 225
Tru9I TTAA 2 cut(s) 42, 225
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 164, 266
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.