Rh4CG130400

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006603
Physical Location & Seq
Reverse (-)
25641128 .. 25643877
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG130400.1

Sequence Viewer

Length: 261 bp
ATGGCGAGCACCAAAGTCCAGCGGATTATGACACAGCCTATTAACTTGATTTTCAGGTTCCTCCAAAGTAAAGCTCGGATTCAGATTTGGCTCTTTGAGCAGAAAGACGTCAGGATTGAAGGTCGCATTATTGGATTTGATGAGTACATGAATCTGGTTCTGGATGATGCAGAAGAAGTCAGCATCAAGAAAAACACCAGGAAGACCTTAGGAAGGATTCTTCTTAAAGGTGACAACATAACTCTGATGATGAACACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

86

Amino Acids

10.1

Weight (kDa)

9.77

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 19 - 84 1.7e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 111
AciI CCGC 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 213
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 242
AxyI CCTNAGG 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 157, 192
BpiI GAAGAC 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 11
BspACI CCGC 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 59
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 208
BstENI CCTNNNNNAGG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 208
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 148
CviJI RGCY 3 cut(s) 37, 74, 91
CviKI_1 RGCY 3 cut(s) 37, 74, 91
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 208
Eco81I CCTNAGG 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 197
FaeI CATG 1 cut(s) 151
FaiI YATR 3 cut(s) 29, 149, 239
FatI CATG 1 cut(s) 147
FokI GGATG 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 151
HinfI GANTC 3 cut(s) 79, 151, 217
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 3 cut(s) 78, 84, 246
Hpy188III TCNNGA 3 cut(s) 112, 161, 187
HpyAV CCTTC 2 cut(s) 113, 207
HpyCH4IV ACGT 2 cut(s) 108, 257
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 208
HpySE526I ACGT 2 cut(s) 108, 257
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 151
LpnPI CCDG 7 cut(s) 32, 40, 97, 140, 146, 184, 211
LweI GCATC 2 cut(s) 157, 192
MaeII ACGT 2 cut(s) 108, 257
MaeIII GTNAC 1 cut(s) 230
MboII GAAGA 3 cut(s) 185, 212, 214
MhlI GDGCHC 1 cut(s) 11
MnlI CCTC 1 cut(s) 71
MseI TTAA 2 cut(s) 42, 225
MspA1I CMGCKG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 230
PfeI GAWTC 3 cut(s) 79, 151, 217
Ppu21I YACGTR 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 59
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 2 cut(s) 42, 225
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 11
SetI ASST 7 cut(s) 59, 76, 111, 124, 209, 232, 260
SfaNI GCATC 2 cut(s) 157, 192
SsiI CCGC 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 197
TaiI ACGT 2 cut(s) 111, 260
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 3 cut(s) 79, 151, 217
Tru1I TTAA 2 cut(s) 42, 225
Tru9I TTAA 2 cut(s) 42, 225
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 211
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.