Rorug01G0028700

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006603
Physical Location & Seq
Forward (+)
4883030 .. 4884294
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0028700.1

Sequence Viewer

Length: 939 bp
ATGGCCGACAATGCTGGAATGCTGGCCTTCAAGCTTCTGCTTTTCGCCTTTGACAAAGGTCCTTTGGCTTCAGACCCATCAATCTCGATTGGACGTTTCATGGCCATTGCTTGCCTCCCAATCGAAATCCAAGAAAACCCACCTCCAAAACCTGAAAATGCCCAAATTAAAACCAACCCATCTCCACCAAAACCCCATCTGAATGGCCAAAATGGGAAAAACCAACATCCCGGAAGCACCAAATCAAGGTCCCTGAATCATGTAATCAAGGGCTTCCTTTTGGCCATTCTAATAGGGGTCCTTTATTATAGTGAGCATTTCCATCCAAAGCTCATCTTAGTCCTTCATTGTCTTTACATATATCTCCTCCTAGAGTTCCTCCTAGCAATGGTAGGAGTCCTGGCTCGAGCCCTTTTGGGATTGGAACTCAAGCCCCACTTCAACGAGCCCTACCTCTCCACATCGCTACAAGACTTCTGGGGCAGAAGATGGAACCTCATGGCCACCAGTATCCTACGCCCGGCCGTATACGAACCCGTCCTCGACTTCTCCAAGCGCTTCATTGGCCGGAAATGGGCTCCACTCCCTGCTGTAATGGGAAGCTTTGTAGTGTCCGGGCTCATGCACGAGCTGATTTACTACTACCAGGGCCGCGTGAAGCCCACGTGGGAGGTTACGTGGTTCTTCGTTCTGCAGGGCTTGTGTTTGACACTGGAGATTGTTTTGAAGAAGGCGTTGAGGGGCAGGTTCCGGTGGTTGCCGACGCCGGTCTCGGTGGTGTTGACAGTTGGGTTTGTGGTTGTGACTTGCTTCTGGCTCTTCTTTCCGCAGTTTCTTCGGAGCAAGGCTGATGTTAGAATGCTCGAAGAGTATGTTGCTTTTGGTGAGTACATGAAGAATGTGGCTCGAACTTTCCAAAAATCGTTGTCTAGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

312

Amino Acids

35.48

Weight (kDa)

9.63

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 144 - 230 8.2e-19 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 735
AccI GTMKAC 1 cut(s) 528
AccII CGCG 1 cut(s) 654
AciI CCGC 2 cut(s) 652, 827
AcoI YGGCCR 7 cut(s) 3, 102, 205, 282, 501, 522, 565
AcuI CTGAAG 1 cut(s) 54
AcvI CACGTG 1 cut(s) 666
AcyI GRCGYC 1 cut(s) 764
AfaI GTAC 1 cut(s) 890
AfeI AGCGCT 1 cut(s) 557
AfiI CCNNNNNNNGG 4 cut(s) 246, 388, 520, 574
AgsI TTSAA 3 cut(s) 31, 442, 727
AjnI CCWGG 2 cut(s) 399, 645
AluBI AGCT 5 cut(s) 34, 331, 603, 631, 933
AluI AGCT 5 cut(s) 34, 331, 603, 631, 933
Alw26I GTCTC 1 cut(s) 775
Ama87I CYCGRG 1 cut(s) 405
Aor51HI AGCGCT 1 cut(s) 557
AoxI GGCC 9 cut(s) 3, 24, 102, 205, 282, 501, 522, 565, 649
AspLEI GCGC 1 cut(s) 558
AspS9I GGNCC 4 cut(s) 59, 249, 298, 649
AsuC2I CCSGG 3 cut(s) 231, 521, 616
AsuHPI GGTGA 1 cut(s) 896
AvaI CYCGRG 1 cut(s) 405
AvaII GGWCC 3 cut(s) 59, 249, 298
BalI TGGCCA 4 cut(s) 104, 207, 284, 503
BanII GRGCYC 4 cut(s) 412, 450, 580, 621
BauI CACGAG 1 cut(s) 626
BbrPI CACGTG 1 cut(s) 666
BccI CCATC 5 cut(s) 85, 187, 204, 330, 483
BceAI ACGGC 1 cut(s) 509
BcgI CGANNNNNNTGC 2 cut(s) 818, 852
BciT130I CCWGG 2 cut(s) 401, 647
BciVI GTATCC 1 cut(s) 521
BcnI CCSGG 3 cut(s) 231, 521, 616
BcoDI GTCTC 1 cut(s) 775
BfaI CTAG 3 cut(s) 371, 383, 930
BfmI CTRYAG 1 cut(s) 692
BfoI RGCGCY 1 cut(s) 559
BfuAI ACCTGC 1 cut(s) 735
BfuI GTATCC 1 cut(s) 521
BisI GCNGC 1 cut(s) 652
BlsI GCNGC 1 cut(s) 653
Bme1390I CCNGG 5 cut(s) 231, 401, 521, 616, 647
Bme18I GGWCC 3 cut(s) 59, 249, 298
BmeT110I CYCGRG 1 cut(s) 405
BmgT120I GGNCC 4 cut(s) 59, 249, 298, 649
BmiI GGNNCC 5 cut(s) 251, 299, 494, 579, 749
BmrFI CCNGG 5 cut(s) 231, 401, 521, 616, 647
BoxI GACNNNNGTC 2 cut(s) 57, 767
BpmI CTGGAG 1 cut(s) 734
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 3 cut(s) 231, 521, 616
BsaAI YACGTR 2 cut(s) 666, 678
BsaHI GRCGYC 1 cut(s) 764
BsaI GGTCTC 1 cut(s) 775
BsaJI CCNNGG 1 cut(s) 646
BsaWI WCCGGW 1 cut(s) 750
BsaXI ACNNNNNCTCC 2 cut(s) 662, 692
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 388, 520, 574
Bse118I RCCGGY 1 cut(s) 766
Bse1I ACTGG 2 cut(s) 507, 717
Bse3DI GCAATG 2 cut(s) 105, 393
BseBI CCWGG 2 cut(s) 401, 647
BseDI CCNNGG 1 cut(s) 646
BseGI GGATG 2 cut(s) 226, 322
BseLI CCNNNNNNNGG 4 cut(s) 246, 388, 520, 574
BseMI GCAATG 2 cut(s) 105, 393
BseNI ACTGG 2 cut(s) 507, 717
BseRI GAGGAG 1 cut(s) 356
BseX3I CGGCCG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 654
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 9 cut(s) 5, 26, 104, 207, 284, 503, 524, 567, 651
BsiEI CGRYCG 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 405
BsiSI CCGG 6 cut(s) 231, 521, 568, 615, 751, 767
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 4 cut(s) 246, 388, 520, 574
BsmAI GTCTC 1 cut(s) 775
BsmFI GGGAC 1 cut(s) 235
BsmI GAATGC 2 cut(s) 24, 864
BsnI GGCC 9 cut(s) 5, 26, 104, 207, 284, 503, 524, 567, 651
Bso31I GGTCTC 1 cut(s) 775
BsoBI CYCGRG 1 cut(s) 405
Bsp1286I GDGCHC 4 cut(s) 412, 450, 580, 621
BspACI CCGC 2 cut(s) 652, 827
BspANI GGCC 9 cut(s) 5, 26, 104, 207, 284, 503, 524, 567, 651
BspFNI CGCG 1 cut(s) 654
BspHI TCATGA 1 cut(s) 935
BspLI GGNNCC 5 cut(s) 251, 299, 494, 579, 749
BspMAI CTGCAG 1 cut(s) 696
BspMI ACCTGC 1 cut(s) 735
BspQI GCTCTTC 1 cut(s) 824
BspTNI GGTCTC 1 cut(s) 775
BsrDI GCAATG 2 cut(s) 105, 393
BsrFI RCCGGY 1 cut(s) 766
BsrI ACTGG 2 cut(s) 507, 717
BssAI RCCGGY 1 cut(s) 766
BssECI CCNNGG 1 cut(s) 646
BssNAI GTATAC 1 cut(s) 529
BssNI GRCGYC 1 cut(s) 764
BssSI CACGAG 1 cut(s) 626
Bst1107I GTATAC 1 cut(s) 529
Bst2BI CACGAG 1 cut(s) 626
Bst2UI CCWGG 2 cut(s) 401, 647
Bst4CI ACNGT 1 cut(s) 787
Bst6I CTCTTC 2 cut(s) 824, 861
BstACI GRCGYC 1 cut(s) 764
BstBAI YACGTR 2 cut(s) 666, 678
BstC8I GCNNGC 2 cut(s) 24, 112
BstDEI CTNAG 1 cut(s) 337
BstF5I GGATG 2 cut(s) 226, 322
BstFNI CGCG 1 cut(s) 654
BstH2I RGCGCY 1 cut(s) 559
BstHHI GCGC 1 cut(s) 558
BstMAI GTCTC 1 cut(s) 775
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 2 cut(s) 11, 564
BstNI CCWGG 2 cut(s) 401, 647
BstPAI GACNNNNGTC 2 cut(s) 57, 767
BstSCI CCNGG 5 cut(s) 229, 399, 519, 614, 645
BstSFI CTRYAG 1 cut(s) 692
BstUI CGCG 1 cut(s) 654
BstXI CCANNNNNNTGG 1 cut(s) 203
BstZ17I GTATAC 1 cut(s) 529
BstZI CGGCCG 1 cut(s) 522
BsuI GTATCC 1 cut(s) 521
BsuRI GGCC 9 cut(s) 5, 26, 104, 207, 284, 503, 524, 567, 651
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 2 cut(s) 226, 322
BtsIMutI CAGTG 1 cut(s) 710
BveI ACCTGC 1 cut(s) 735
Cac8I GCNNGC 2 cut(s) 24, 112
CciI TCATGA 1 cut(s) 935
CfoI GCGC 1 cut(s) 558
Cfr10I RCCGGY 1 cut(s) 766
Cfr13I GGNCC 4 cut(s) 59, 249, 298, 649
CseI GACGC 1 cut(s) 772
Csp6I GTAC 1 cut(s) 889
CviAII CATG 6 cut(s) 100, 260, 499, 622, 892, 936
CviQI GTAC 1 cut(s) 889
DdeI CTNAG 1 cut(s) 337
EaeI YGGCCR 7 cut(s) 3, 102, 205, 282, 501, 522, 565
EagI CGGCCG 1 cut(s) 522
Eam1104I CTCTTC 2 cut(s) 824, 861
EarI CTCTTC 2 cut(s) 824, 861
EclXI CGGCCG 1 cut(s) 522
Eco24I GRGCYC 4 cut(s) 412, 450, 580, 621
Eco31I GGTCTC 1 cut(s) 775
Eco47I GGWCC 3 cut(s) 59, 249, 298
Eco47III AGCGCT 1 cut(s) 557
Eco52I CGGCCG 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 54
Eco72I CACGTG 1 cut(s) 666
Eco88I CYCGRG 1 cut(s) 405
EcoO109I RGGNCCY 3 cut(s) 59, 249, 298
EcoRII CCWGG 2 cut(s) 399, 645
EcoT38I GRGCYC 4 cut(s) 412, 450, 580, 621
FaeI CATG 6 cut(s) 103, 263, 502, 625, 895, 939
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 422, 454
FaqI GGGAC 1 cut(s) 235
FatI CATG 6 cut(s) 99, 259, 498, 621, 891, 935
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 1 cut(s) 652
FokI GGATG 2 cut(s) 213, 309
FriOI GRGCYC 4 cut(s) 412, 450, 580, 621
Fsp4HI GCNGC 1 cut(s) 652
FspBI CTAG 3 cut(s) 371, 383, 930
GlaI GCGC 1 cut(s) 557
GluI GCNGC 1 cut(s) 652
GsuI CTGGAG 1 cut(s) 734
HaeII RGCGCY 1 cut(s) 559
HaeIII GGCC 9 cut(s) 5, 26, 104, 207, 284, 503, 524, 567, 651
HapII CCGG 6 cut(s) 231, 521, 568, 615, 751, 767
HgaI GACGC 1 cut(s) 772
HhaI GCGC 1 cut(s) 558
Hin1I GRCGYC 1 cut(s) 764
Hin1II CATG 6 cut(s) 103, 263, 502, 625, 895, 939
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HindIII AAGCTT 2 cut(s) 32, 601
HinfI GANTC 2 cut(s) 256, 396
HpaII CCGG 6 cut(s) 231, 521, 568, 615, 751, 767
HphI GGTGA 1 cut(s) 896
Hpy166II GTNNAC 2 cut(s) 529, 783
Hpy188I TCNGA 3 cut(s) 73, 201, 840
Hpy188III TCNNGA 2 cut(s) 85, 936
Hpy8I GTNNAC 2 cut(s) 529, 783
Hpy99I CGWCG 1 cut(s) 766
HpyAV CCTTC 3 cut(s) 37, 353, 724
HpyCH4III ACNGT 1 cut(s) 787
HpyCH4IV ACGT 3 cut(s) 94, 665, 677
HpyCH4V TGCA 2 cut(s) 625, 694
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 564
HpyF3I CTNAG 1 cut(s) 337
HpySE526I ACGT 3 cut(s) 94, 665, 677
Hsp92I GRCGYC 1 cut(s) 764
Hsp92II CATG 6 cut(s) 103, 263, 502, 625, 895, 939
HspAI GCGC 1 cut(s) 556
LguI GCTCTTC 1 cut(s) 824
LmnI GCTCC 2 cut(s) 583, 840
MaeI CTAG 3 cut(s) 371, 383, 930
MaeII ACGT 3 cut(s) 94, 665, 677
MaeIII GTNAC 2 cut(s) 673, 802
MboII GAAGA 7 cut(s) 498, 676, 739, 811, 827, 878, 907
MhlI GDGCHC 4 cut(s) 412, 450, 580, 621
MlsI TGGCCA 4 cut(s) 104, 207, 284, 503
MluCI AATT 1 cut(s) 165
MluNI TGGCCA 4 cut(s) 104, 207, 284, 503
MlyI GAGTC 1 cut(s) 405
MnlI CCTC 9 cut(s) 125, 153, 377, 389, 464, 506, 551, 664, 732
Mox20I TGGCCA 4 cut(s) 104, 207, 284, 503
MscI TGGCCA 4 cut(s) 104, 207, 284, 503
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 201
Msp20I TGGCCA 4 cut(s) 104, 207, 284, 503
MspI CCGG 6 cut(s) 231, 521, 568, 615, 751, 767
MspR9I CCNGG 5 cut(s) 231, 401, 521, 616, 647
Mva1269I GAATGC 2 cut(s) 24, 864
MvaI CCWGG 2 cut(s) 401, 647
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 2 cut(s) 11, 564
NciI CCSGG 3 cut(s) 231, 521, 616
NlaIII CATG 6 cut(s) 103, 263, 502, 625, 895, 939
NlaIV GGNNCC 5 cut(s) 251, 299, 494, 579, 749
NmuCI GTSAC 1 cut(s) 802
PaeR7I CTCGAG 1 cut(s) 405
PagI TCATGA 1 cut(s) 935
PciSI GCTCTTC 1 cut(s) 824
PctI GAATGC 2 cut(s) 24, 864
PfeI GAWTC 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 1 cut(s) 653
PleI GAGTC 1 cut(s) 404
PmaCI CACGTG 1 cut(s) 666
PmlI CACGTG 1 cut(s) 666
PpsI GAGTC 1 cut(s) 404
Ppu21I YACGTR 2 cut(s) 666, 678
PpuMI RGGWCCY 3 cut(s) 59, 249, 298
PshAI GACNNNNGTC 2 cut(s) 57, 767
Psp5II RGGWCCY 3 cut(s) 59, 249, 298
Psp6I CCWGG 2 cut(s) 399, 645
PspCI CACGTG 1 cut(s) 666
PspGI CCWGG 2 cut(s) 399, 645
PspN4I GGNNCC 5 cut(s) 251, 299, 494, 579, 749
PspPI GGNCC 4 cut(s) 59, 249, 298, 649
PspPPI RGGWCCY 3 cut(s) 59, 249, 298
PspXI VCTCGAGB 1 cut(s) 405
PstI CTGCAG 1 cut(s) 696
RsaI GTAC 1 cut(s) 890
RsaNI GTAC 1 cut(s) 889
RseI CAYNNNNRTG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 824
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 652
Sau96I GGNCC 4 cut(s) 59, 249, 298, 649
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 5 cut(s) 231, 401, 521, 616, 647
SduI GDGCHC 4 cut(s) 412, 450, 580, 621
SfcI CTRYAG 1 cut(s) 692
Sfr274I CTCGAG 1 cut(s) 405
SinI GGWCC 3 cut(s) 59, 249, 298
SlaI CTCGAG 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 405, 428
SmoI CTYRAG 2 cut(s) 405, 428
Sse9I AATT 1 cut(s) 165
SsiI CCGC 2 cut(s) 652, 827
SspMI CTAG 3 cut(s) 371, 383, 930
StyD4I CCNGG 5 cut(s) 229, 399, 519, 614, 645
TaaI ACNGT 1 cut(s) 787
TaiI ACGT 3 cut(s) 97, 668, 680
TaqI TCGA 6 cut(s) 86, 123, 406, 543, 864, 907
TasI AATT 1 cut(s) 165
TatI WGTACW 1 cut(s) 888
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 717
TseFI GTSAC 1 cut(s) 802
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 4 cut(s) 88, 335, 550, 908
TspRI CASTG 1 cut(s) 717
VpaK11BI GGWCC 3 cut(s) 59, 249, 298
XhoI CTCGAG 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 3 cut(s) 371, 383, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.