MD13G1262900.v1.1

Small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0006603
Physical Location & Seq
Forward (+)
33411954 .. 33415732
3779 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1262900.v1.1.491

Sequence Viewer

Length: 267 bp
ATGGCGAGCGCTAAAGTCCAGAGGATTATGACCCAACCCATTAACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGCATTCAGATTTGGCTATTTGAGCAGAAGGACCTCAGGATTGAAGGCCGAATTATTGGTTTTGATGAGTACATGAATTTGGTTCTGGATGAAGCCGAAGAAGTCAGCATCAAGAAAAAGACCAGAAAGTCGTTAGGAAGGATTCTTCTCAAAGGAGATAACATTACTCTGATGATGAGCACGGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

89

Amino Acids

10.26

Weight (kDa)

9.99

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 19 - 84 2.6e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 146
AfeI AGCGCT 1 cut(s) 10
AgsI TTSAA 2 cut(s) 65, 119
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 257
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 151
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 59
BmsI GCATC 1 cut(s) 192
Bse21I CCTNAGG 1 cut(s) 110
BseGI GGATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 124
BshFI GGCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 78
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 257
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 7, 76
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 110
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 7, 76
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 148
CviJI RGCY 4 cut(s) 74, 91, 123, 170
CviKI_1 RGCY 4 cut(s) 74, 91, 123, 170
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 110
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 106
Eco47III AGCGCT 1 cut(s) 10
Eco81I CCTNAGG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 106
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 29, 149
FatI CATG 1 cut(s) 147
FokI GGATG 1 cut(s) 176
GlaI GCGC 1 cut(s) 10
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 1 cut(s) 123
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 84, 246
Hpy188III TCNNGA 4 cut(s) 19, 112, 161, 187
HpyAV CCTTC 4 cut(s) 71, 97, 113, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 32, 40, 97, 146, 211
LweI GCATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 185, 212
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 2 cut(s) 126, 151
MnlI CCTC 2 cut(s) 15, 119
MseI TTAA 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 59
PctI GAATGC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 257
SetI ASST 3 cut(s) 59, 76, 111
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 1 cut(s) 106
Sse9I AATT 2 cut(s) 126, 151
TasI AATT 2 cut(s) 126, 151
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 164, 180
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.