Autophagy-related protein 11
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G30790 |
| fragaria_vesca | FvH4_4g10150 FvH4_4g10150 FvH4_4g10150 FvH4_4g10150 FvH4_4g10150 FvH4_4g10150 |
| malus_domestica | MD04G1049500.v1.1 MD13G1257100.v1.1 |
| prunus_persica | Prupe.1G102400_v2.0.a1 |
| pyrus_communis | pycom04g04370 pycom13g26250 pycom17g18710 |
| rosa_chinensis | RchiOBHm_Chr4g0405611 |
| rosa_laevigata | RLG00000008834 |
| rosa_multiflora | Rmu_sc0001200.1_g000061 |
| rosa_roxburghii | Rroxscaffold_5G00350090 |
| rosa_rugosa | Rorug04G0060700 Rorug04G0060800 |
| rosa_samantha | Rh4AG132700 Rh4BG127500 Rh4CG140400 Rh4DG127000 |
| rosa_wichuraiana | Rw4G010740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 597 |
| Acc16I | TGCGCA | 1 cut(s) | 2592 |
| AccBSI | CCGCTC | 1 cut(s) | 6 |
| AccI | GTMKAC | 1 cut(s) | 2672 |
| AccIII | TCCGGA | 2 cut(s) | 2724, 2841 |
| AciI | CCGC | 9 cut(s) | 6, 284, 439, 514, 610, 1296, 1653, 2261, 3266 |
| AclWI | GGATC | 4 cut(s) | 371, 384, 903, 1814 |
| AcoI | YGGCCR | 1 cut(s) | 67 |
| AcsI | RAATTY | 3 cut(s) | 80, 581, 634 |
| AcuI | CTGAAG | 3 cut(s) | 87, 3324, 3360 |
| AdeI | CACNNNGTG | 1 cut(s) | 2684 |
| AfaI | GTAC | 8 cut(s) | 457, 507, 1049, 1158, 1452, 1842, 2830, 2990 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 742, 1302, 1996, 2860, 2892, 3266 |
| AflIII | ACRYGT | 1 cut(s) | 1461 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3200 |
| AhlI | ACTAGT | 1 cut(s) | 1529 |
| AjiI | CACGTC | 2 cut(s) | 1462, 2116 |
| AjnI | CCWGG | 4 cut(s) | 1035, 1248, 2859, 3294 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 695, 727 |
| Alw21I | GWGCWC | 2 cut(s) | 2253, 2732 |
| Alw26I | GTCTC | 7 cut(s) | 89, 942, 2012, 2029, 2170, 2714, 3374 |
| AlwI | GGATC | 4 cut(s) | 371, 384, 903, 1814 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1721, 3114, 3251 |
| Ama87I | CYCGRG | 2 cut(s) | 2208, 3301 |
| Aor13HI | TCCGGA | 2 cut(s) | 2724, 2841 |
| AoxI | GGCC | 8 cut(s) | 67, 436, 1291, 1305, 1441, 1819, 1908, 3176 |
| ApeKI | GCWGC | 9 cut(s) | 90, 202, 265, 511, 1715, 1880, 2194, 2648, 3065 |
| ApoI | RAATTY | 3 cut(s) | 80, 581, 634 |
| AseI | ATTAAT | 1 cut(s) | 1727 |
| AspLEI | GCGC | 4 cut(s) | 828, 1986, 2593, 3216 |
| AspS9I | GGNCC | 5 cut(s) | 1040, 1292, 1305, 1442, 1820 |
| AsuC2I | CCSGG | 1 cut(s) | 2894 |
| AsuHPI | GGTGA | 8 cut(s) | 282, 571, 668, 1061, 1336, 1649, 2444, 2989 |
| AsuII | TTCGAA | 1 cut(s) | 1598 |
| AvaI | CYCGRG | 2 cut(s) | 2208, 3301 |
| AvaII | GGWCC | 1 cut(s) | 1040 |
| AxyI | CCTNAGG | 2 cut(s) | 1662, 3261 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2121, 2154 |
| BalI | TGGCCA | 1 cut(s) | 69 |
| BamHI | GGATCC | 1 cut(s) | 376 |
| BanII | GRGCYC | 3 cut(s) | 2372, 2732, 3302 |
| BauI | CACGAG | 1 cut(s) | 1455 |
| Bbv12I | GWGCWC | 2 cut(s) | 2253, 2732 |
| BbvI | GCAGC | 9 cut(s) | 102, 189, 252, 523, 1727, 1867, 2206, 2635, 3077 |
| BccI | CCATC | 8 cut(s) | 29, 295, 452, 1747, 2458, 2646, 2819, 3241 |
| BciT130I | CCWGG | 4 cut(s) | 1037, 1250, 2861, 3296 |
| BciVI | GTATCC | 1 cut(s) | 2536 |
| BclI | TGATCA | 1 cut(s) | 157 |
| BcnI | CCSGG | 1 cut(s) | 2894 |
| BcoDI | GTCTC | 7 cut(s) | 89, 942, 2012, 2029, 2170, 2714, 3374 |
| BcuI | ACTAGT | 1 cut(s) | 1529 |
| BfaI | CTAG | 7 cut(s) | 176, 534, 990, 1530, 1583, 1712, 2187 |
| BfmI | CTRYAG | 3 cut(s) | 850, 1881, 2024 |
| BfoI | RGCGCY | 1 cut(s) | 3217 |
| BfuI | GTATCC | 1 cut(s) | 2536 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 854 |
| BlpI | GCTNAGC | 1 cut(s) | 1656 |
| Bme1390I | CCNGG | 5 cut(s) | 1037, 1250, 2861, 2894, 3296 |
| Bme18I | GGWCC | 1 cut(s) | 1040 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3200 |
| BmeT110I | CYCGRG | 2 cut(s) | 2208, 3301 |
| BmgBI | CACGTC | 2 cut(s) | 1462, 2116 |
| BmgT120I | GGNCC | 5 cut(s) | 1040, 1292, 1305, 1442, 1820 |
| BmiI | GGNNCC | 5 cut(s) | 378, 1041, 1294, 1444, 1744 |
| BmrFI | CCNGG | 5 cut(s) | 1037, 1250, 2861, 2894, 3296 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1656 |
| Bpu14I | TTCGAA | 1 cut(s) | 1598 |
| BpuEI | CTTGAG | 3 cut(s) | 209, 1931, 2772 |
| BpuMI | CCSGG | 1 cut(s) | 2894 |
| Bsa29I | ATCGAT | 2 cut(s) | 1564, 2273 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1560, 2019 |
| BsaI | GGTCTC | 3 cut(s) | 2170, 2714, 3374 |
| BsaJI | CCNNGG | 6 cut(s) | 360, 1035, 1036, 1282, 1438, 3295 |
| BsaWI | WCCGGW | 2 cut(s) | 2724, 2841 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 597, 627 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 742, 1302, 1996, 2860, 2892, 3266 |
| Bse118I | RCCGGY | 2 cut(s) | 334, 3174 |
| Bse1I | ACTGG | 4 cut(s) | 1119, 1848, 2001, 2407 |
| Bse21I | CCTNAGG | 2 cut(s) | 1662, 3261 |
| Bse3DI | GCAATG | 3 cut(s) | 1245, 1901, 3414 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1560, 2019 |
| BseAI | TCCGGA | 2 cut(s) | 2724, 2841 |
| BseBI | CCWGG | 4 cut(s) | 1037, 1250, 2861, 3296 |
| BseCI | ATCGAT | 2 cut(s) | 1564, 2273 |
| BseDI | CCNNGG | 6 cut(s) | 360, 1035, 1036, 1282, 1438, 3295 |
| BseJI | GATNNNNATC | 2 cut(s) | 1560, 2019 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 742, 1302, 1996, 2860, 2892, 3266 |
| BseMI | GCAATG | 3 cut(s) | 1245, 1901, 3414 |
| BseNI | ACTGG | 4 cut(s) | 1119, 1848, 2001, 2407 |
| BseRI | GAGGAG | 2 cut(s) | 1436, 1679 |
| BseXI | GCAGC | 9 cut(s) | 102, 189, 252, 523, 1727, 1867, 2206, 2635, 3077 |
| BseYI | CCCAGC | 2 cut(s) | 1364, 2324 |
| BsgI | GTGCAG | 1 cut(s) | 2661 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3043 |
| BshFI | GGCC | 8 cut(s) | 69, 438, 1293, 1307, 1443, 1821, 1910, 3178 |
| BshVI | ATCGAT | 2 cut(s) | 1564, 2273 |
| BsiEI | CGRYCG | 1 cut(s) | 3043 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2253, 2732 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2208, 3301 |
| BsiSI | CCGG | 5 cut(s) | 335, 2725, 2842, 2893, 3175 |
| BslFI | GGGAC | 2 cut(s) | 999, 2043 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 742, 1302, 1996, 2860, 2892, 3266 |
| BsmAI | GTCTC | 7 cut(s) | 89, 942, 2012, 2029, 2170, 2714, 3374 |
| BsmBI | CGTCTC | 1 cut(s) | 2012 |
| BsmFI | GGGAC | 2 cut(s) | 999, 2043 |
| BsmI | GAATGC | 1 cut(s) | 1771 |
| BsnI | GGCC | 8 cut(s) | 69, 438, 1293, 1307, 1443, 1821, 1910, 3178 |
| Bso31I | GGTCTC | 3 cut(s) | 2170, 2714, 3374 |
| BsoBI | CYCGRG | 2 cut(s) | 2208, 3301 |
| Bsp119I | TTCGAA | 1 cut(s) | 1598 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2253, 2372, 2732, 3302 |
| Bsp13I | TCCGGA | 2 cut(s) | 2724, 2841 |
| Bsp1407I | TGTACA | 2 cut(s) | 1156, 2988 |
| Bsp143I | GATC | 8 cut(s) | 157, 376, 561, 895, 1561, 1806, 2653, 3160 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1656 |
| Bsp19I | CCATGG | 1 cut(s) | 1438 |
| BspACI | CCGC | 9 cut(s) | 6, 284, 439, 514, 610, 1296, 1653, 2261, 3266 |
| BspANI | GGCC | 8 cut(s) | 69, 438, 1293, 1307, 1443, 1821, 1910, 3178 |
| BspDI | ATCGAT | 2 cut(s) | 1564, 2273 |
| BspEI | TCCGGA | 2 cut(s) | 2724, 2841 |
| BspHI | TCATGA | 1 cut(s) | 898 |
| BspLI | GGNNCC | 5 cut(s) | 378, 1041, 1294, 1444, 1744 |
| BspMAI | CTGCAG | 2 cut(s) | 854, 1885 |
| BspPI | GGATC | 4 cut(s) | 371, 384, 903, 1814 |
| BspT104I | TTCGAA | 1 cut(s) | 1598 |
| BspTNI | GGTCTC | 3 cut(s) | 2170, 2714, 3374 |
| BsrBI | CCGCTC | 1 cut(s) | 6 |
| BsrDI | GCAATG | 3 cut(s) | 1245, 1901, 3414 |
| BsrFI | RCCGGY | 2 cut(s) | 334, 3174 |
| BsrGI | TGTACA | 2 cut(s) | 1156, 2988 |
| BsrI | ACTGG | 4 cut(s) | 1119, 1848, 2001, 2407 |
| BssAI | RCCGGY | 2 cut(s) | 334, 3174 |
| BssECI | CCNNGG | 6 cut(s) | 360, 1035, 1036, 1282, 1438, 3295 |
| BssMI | GATC | 8 cut(s) | 157, 376, 561, 895, 1561, 1806, 2653, 3160 |
| BssNAI | GTATAC | 1 cut(s) | 2673 |
| BssSI | CACGAG | 1 cut(s) | 1455 |
| BssT1I | CCWWGG | 2 cut(s) | 360, 1438 |
| Bst1107I | GTATAC | 1 cut(s) | 2673 |
| Bst2BI | CACGAG | 1 cut(s) | 1455 |
| Bst2UI | CCWGG | 4 cut(s) | 1037, 1250, 2861, 3296 |
| Bst6I | CTCTTC | 4 cut(s) | 831, 1388, 2514, 3379 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2684 |
| BstAUI | TGTACA | 2 cut(s) | 1156, 2988 |
| BstBI | TTCGAA | 1 cut(s) | 1598 |
| BstDSI | CCRYGG | 2 cut(s) | 1282, 1438 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 740 |
| BstH2I | RGCGCY | 1 cut(s) | 3217 |
| BstHHI | GCGC | 4 cut(s) | 828, 1986, 2593, 3216 |
| BstKTI | GATC | 8 cut(s) | 160, 379, 564, 898, 1564, 1809, 2656, 3163 |
| BstMAI | GTCTC | 7 cut(s) | 89, 942, 2012, 2029, 2170, 2714, 3374 |
| BstMBI | GATC | 8 cut(s) | 157, 376, 561, 895, 1561, 1806, 2653, 3160 |
| BstMCI | CGRYCG | 1 cut(s) | 3043 |
| BstNI | CCWGG | 4 cut(s) | 1037, 1250, 2861, 3296 |
| BstNSI | RCATGY | 1 cut(s) | 1171 |
| BstSCI | CCNGG | 5 cut(s) | 1035, 1248, 2859, 2892, 3294 |
| BstSFI | CTRYAG | 3 cut(s) | 850, 1881, 2024 |
| BstV1I | GCAGC | 9 cut(s) | 102, 189, 252, 523, 1727, 1867, 2206, 2635, 3077 |
| BstX2I | RGATCY | 2 cut(s) | 376, 1806 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1753 |
| BstYI | RGATCY | 2 cut(s) | 376, 1806 |
| BstZ17I | GTATAC | 1 cut(s) | 2673 |
| Bsu15I | ATCGAT | 2 cut(s) | 1564, 2273 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1662, 3261 |
| BsuI | GTATCC | 1 cut(s) | 2536 |
| BsuRI | GGCC | 8 cut(s) | 69, 438, 1293, 1307, 1443, 1821, 1910, 3178 |
| BsuTUI | ATCGAT | 2 cut(s) | 1564, 2273 |
| BtgI | CCRYGG | 2 cut(s) | 1282, 1438 |
| BtrI | CACGTC | 2 cut(s) | 1462, 2116 |
| BtsI | GCAGTG | 1 cut(s) | 3420 |
| BtsIMutI | CAGTG | 6 cut(s) | 15, 1505, 1622, 1963, 2434, 3420 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1721, 3114, 3251 |
| CciI | TCATGA | 1 cut(s) | 898 |
| CfoI | GCGC | 4 cut(s) | 828, 1986, 2593, 3216 |
| Cfr10I | RCCGGY | 2 cut(s) | 334, 3174 |
| Cfr13I | GGNCC | 5 cut(s) | 1040, 1292, 1305, 1442, 1820 |
| ClaI | ATCGAT | 2 cut(s) | 1564, 2273 |
| CseI | GACGC | 1 cut(s) | 1001 |
| Csp6I | GTAC | 8 cut(s) | 456, 506, 1048, 1157, 1451, 1841, 2829, 2989 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2097, 2132, 2410, 2445 |
| CviQI | GTAC | 8 cut(s) | 456, 506, 1048, 1157, 1451, 1841, 2829, 2989 |
| DpnI | GATC | 8 cut(s) | 159, 378, 563, 897, 1563, 1808, 2655, 3162 |
| DpnII | GATC | 8 cut(s) | 157, 376, 561, 895, 1561, 1806, 2653, 3160 |
| DraI | TTTAAA | 1 cut(s) | 387 |
| DraIII | CACNNNGTG | 1 cut(s) | 2684 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3200 |
| EaeI | YGGCCR | 1 cut(s) | 67 |
| Eam1104I | CTCTTC | 4 cut(s) | 831, 1388, 2514, 3379 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3200 |
| EarI | CTCTTC | 4 cut(s) | 831, 1388, 2514, 3379 |
| EciI | GGCGGA | 1 cut(s) | 273 |
| Ecl136II | GAGCTC | 1 cut(s) | 2730 |
| Eco130I | CCWWGG | 2 cut(s) | 360, 1438 |
| Eco24I | GRGCYC | 3 cut(s) | 2372, 2732, 3302 |
| Eco31I | GGTCTC | 3 cut(s) | 2170, 2714, 3374 |
| Eco32I | GATATC | 2 cut(s) | 1708, 3033 |
| Eco47I | GGWCC | 1 cut(s) | 1040 |
| Eco53kI | GAGCTC | 1 cut(s) | 2730 |
| Eco57I | CTGAAG | 3 cut(s) | 87, 3324, 3360 |
| Eco81I | CCTNAGG | 2 cut(s) | 1662, 3261 |
| Eco88I | CYCGRG | 2 cut(s) | 2208, 3301 |
| EcoICRI | GAGCTC | 1 cut(s) | 2730 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 740 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1040, 1305 |
| EcoRII | CCWGG | 4 cut(s) | 1035, 1248, 2859, 3294 |
| EcoRV | GATATC | 2 cut(s) | 1708, 3033 |
| EcoT14I | CCWWGG | 2 cut(s) | 360, 1438 |
| EcoT22I | ATGCAT | 3 cut(s) | 373, 2076, 2852 |
| EcoT38I | GRGCYC | 3 cut(s) | 2372, 2732, 3302 |
| ErhI | CCWWGG | 2 cut(s) | 360, 1438 |
| Esp3I | CGTCTC | 1 cut(s) | 2012 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1770, 1802 |
| FaqI | GGGAC | 2 cut(s) | 999, 2043 |
| FauI | CCCGC | 3 cut(s) | 507, 1303, 3259 |
| FauNDI | CATATG | 1 cut(s) | 1975 |
| FbaI | TGATCA | 1 cut(s) | 157 |
| FblI | GTMKAC | 1 cut(s) | 2672 |
| FriOI | GRGCYC | 3 cut(s) | 2372, 2732, 3302 |
| FspAI | RTGCGCAY | 1 cut(s) | 2592 |
| FspBI | CTAG | 7 cut(s) | 176, 534, 990, 1530, 1583, 1712, 2187 |
| FspI | TGCGCA | 1 cut(s) | 2592 |
| GlaI | GCGC | 4 cut(s) | 827, 1985, 2592, 3215 |
| GsaI | CCCAGC | 2 cut(s) | 1368, 2328 |
| HaeII | RGCGCY | 1 cut(s) | 3217 |
| HaeIII | GGCC | 8 cut(s) | 69, 438, 1293, 1307, 1443, 1821, 1910, 3178 |
| HapII | CCGG | 5 cut(s) | 335, 2725, 2842, 2893, 3175 |
| HgaI | GACGC | 1 cut(s) | 1001 |
| HhaI | GCGC | 4 cut(s) | 828, 1986, 2593, 3216 |
| Hin6I | GCGC | 4 cut(s) | 826, 1984, 2591, 3214 |
| HinP1I | GCGC | 4 cut(s) | 826, 1984, 2591, 3214 |
| HincII | GTYRAC | 2 cut(s) | 489, 2258 |
| HindII | GTYRAC | 2 cut(s) | 489, 2258 |
| HpaI | GTTAAC | 1 cut(s) | 489 |
| HpaII | CCGG | 5 cut(s) | 335, 2725, 2842, 2893, 3175 |
| HphI | GGTGA | 8 cut(s) | 282, 571, 668, 1061, 1336, 1649, 2444, 2989 |
| HpyAV | CCTTC | 4 cut(s) | 636, 1082, 2114, 2207 |
| HpyCH4IV | ACGT | 6 cut(s) | 315, 1185, 1417, 1461, 2005, 2115 |
| HpySE526I | ACGT | 6 cut(s) | 315, 1185, 1417, 1461, 2005, 2115 |
| HspAI | GCGC | 4 cut(s) | 826, 1984, 2591, 3214 |
| Kpn2I | TCCGGA | 2 cut(s) | 2724, 2841 |
| KroI | GCCGGC | 1 cut(s) | 3174 |
| KroNI | GCCGGC | 1 cut(s) | 3176 |
| Ksp22I | TGATCA | 1 cut(s) | 157 |
| KspAI | GTTAAC | 1 cut(s) | 489 |
| Kzo9I | GATC | 8 cut(s) | 157, 376, 561, 895, 1561, 1806, 2653, 3160 |
| LmnI | GCTCC | 3 cut(s) | 1522, 1576, 2727 |
| Lsp1109I | GCAGC | 9 cut(s) | 102, 189, 252, 523, 1727, 1867, 2206, 2635, 3077 |
| MaeI | CTAG | 7 cut(s) | 176, 534, 990, 1530, 1583, 1712, 2187 |
| MaeII | ACGT | 6 cut(s) | 315, 1185, 1417, 1461, 2005, 2115 |
| MalI | GATC | 8 cut(s) | 159, 378, 563, 897, 1563, 1808, 2655, 3162 |
| MbiI | CCGCTC | 1 cut(s) | 6 |
| MboI | GATC | 8 cut(s) | 157, 376, 561, 895, 1561, 1806, 2653, 3160 |
| MfeI | CAATTG | 2 cut(s) | 451, 1370 |
| MflI | RGATCY | 2 cut(s) | 376, 1806 |
| MhlI | GDGCHC | 4 cut(s) | 2253, 2372, 2732, 3302 |
| MlsI | TGGCCA | 1 cut(s) | 69 |
| MluNI | TGGCCA | 1 cut(s) | 69 |
| MlyI | GAGTC | 5 cut(s) | 704, 2261, 2504, 2762, 2865 |
| MmeI | TCCRAC | 3 cut(s) | 693, 2526, 3172 |
| Mox20I | TGGCCA | 1 cut(s) | 69 |
| Mph1103I | ATGCAT | 3 cut(s) | 373, 2076, 2852 |
| MroI | TCCGGA | 2 cut(s) | 2724, 2841 |
| MroNI | GCCGGC | 1 cut(s) | 3174 |
| MscI | TGGCCA | 1 cut(s) | 69 |
| MseI | TTAA | 9 cut(s) | 386, 488, 891, 963, 1431, 1613, 1727, 2063, 2808 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1358, 2643 |
| Msp20I | TGGCCA | 1 cut(s) | 69 |
| MspA1I | CMGCKG | 4 cut(s) | 514, 1655, 2363, 2693 |
| MspI | CCGG | 5 cut(s) | 335, 2725, 2842, 2893, 3175 |
| MspR9I | CCNGG | 5 cut(s) | 1037, 1250, 2861, 2894, 3296 |
| MunI | CAATTG | 2 cut(s) | 451, 1370 |
| Mva1269I | GAATGC | 1 cut(s) | 1771 |
| MvaI | CCWGG | 4 cut(s) | 1037, 1250, 2861, 3296 |
| NaeI | GCCGGC | 1 cut(s) | 3176 |
| NciI | CCSGG | 1 cut(s) | 2894 |
| NcoI | CCATGG | 1 cut(s) | 1438 |
| NdeI | CATATG | 1 cut(s) | 1975 |
| NdeII | GATC | 8 cut(s) | 157, 376, 561, 895, 1561, 1806, 2653, 3160 |
| NgoMIV | GCCGGC | 1 cut(s) | 3174 |
| NlaIV | GGNNCC | 5 cut(s) | 378, 1041, 1294, 1444, 1744 |
| NmuCI | GTSAC | 6 cut(s) | 230, 883, 1186, 1457, 2111, 3397 |
| NsbI | TGCGCA | 1 cut(s) | 2592 |
| NsiI | ATGCAT | 3 cut(s) | 373, 2076, 2852 |
| NspI | RCATGY | 1 cut(s) | 1171 |
| NspV | TTCGAA | 1 cut(s) | 1598 |
| PaeR7I | CTCGAG | 1 cut(s) | 3301 |
| PagI | TCATGA | 1 cut(s) | 898 |
| PasI | CCCWGGG | 1 cut(s) | 1036 |
| PctI | GAATGC | 1 cut(s) | 1771 |
| PdiI | GCCGGC | 1 cut(s) | 3176 |
| PflFI | GACNNNGTC | 2 cut(s) | 719, 1630 |
| PleI | GAGTC | 5 cut(s) | 703, 2261, 2503, 2762, 2864 |
| PpsI | GAGTC | 5 cut(s) | 703, 2261, 2503, 2762, 2864 |
| PpuMI | RGGWCCY | 1 cut(s) | 1040 |
| PshBI | ATTAAT | 1 cut(s) | 1727 |
| PsiI | TTATAA | 1 cut(s) | 597 |
| Psp124BI | GAGCTC | 1 cut(s) | 2732 |
| Psp5II | RGGWCCY | 1 cut(s) | 1040 |
| Psp6I | CCWGG | 4 cut(s) | 1035, 1248, 2859, 3294 |
| PspFI | CCCAGC | 2 cut(s) | 1364, 2324 |
| PspGI | CCWGG | 4 cut(s) | 1035, 1248, 2859, 3294 |
| PspN4I | GGNNCC | 5 cut(s) | 378, 1041, 1294, 1444, 1744 |
| PspPI | GGNCC | 5 cut(s) | 1040, 1292, 1305, 1442, 1820 |
| PspPPI | RGGWCCY | 1 cut(s) | 1040 |
| PstI | CTGCAG | 2 cut(s) | 854, 1885 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1721, 3114, 3251 |
| PsuI | RGATCY | 2 cut(s) | 376, 1806 |
| PsyI | GACNNNGTC | 2 cut(s) | 719, 1630 |
| PvuII | CAGCTG | 2 cut(s) | 2363, 2693 |
| RsaI | GTAC | 8 cut(s) | 457, 507, 1049, 1158, 1452, 1842, 2830, 2990 |
| RsaNI | GTAC | 8 cut(s) | 456, 506, 1048, 1157, 1451, 1841, 2829, 2989 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1358, 2643 |
| SacI | GAGCTC | 1 cut(s) | 2732 |
| SaqAI | TTAA | 9 cut(s) | 386, 488, 891, 963, 1431, 1613, 1727, 2063, 2808 |
| Sau3AI | GATC | 8 cut(s) | 157, 376, 561, 895, 1561, 1806, 2653, 3160 |
| Sau96I | GGNCC | 5 cut(s) | 1040, 1292, 1305, 1442, 1820 |
| SbfI | CCTGCAGG | 1 cut(s) | 854 |
| SchI | GAGTC | 5 cut(s) | 704, 2261, 2504, 2762, 2865 |
| ScrFI | CCNGG | 5 cut(s) | 1037, 1250, 2861, 2894, 3296 |
| SdaI | CCTGCAGG | 1 cut(s) | 854 |
| SduI | GDGCHC | 4 cut(s) | 2253, 2372, 2732, 3302 |
| SfcI | CTRYAG | 3 cut(s) | 850, 1881, 2024 |
| Sfr274I | CTCGAG | 1 cut(s) | 3301 |
| SfuI | TTCGAA | 1 cut(s) | 1598 |
| SinI | GGWCC | 1 cut(s) | 1040 |
| SlaI | CTCGAG | 1 cut(s) | 3301 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1358, 2643 |
| SmlI | CTYRAG | 4 cut(s) | 188, 1946, 2787, 3301 |
| SmoI | CTYRAG | 4 cut(s) | 188, 1946, 2787, 3301 |
| SpeI | ACTAGT | 1 cut(s) | 1529 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 854 |
| SsiI | CCGC | 9 cut(s) | 6, 284, 439, 514, 610, 1296, 1653, 2261, 3266 |
| SspI | AATATT | 1 cut(s) | 1543 |
| SspMI | CTAG | 7 cut(s) | 176, 534, 990, 1530, 1583, 1712, 2187 |
| SstI | GAGCTC | 1 cut(s) | 2732 |
| StyD4I | CCNGG | 5 cut(s) | 1035, 1248, 2859, 2892, 3294 |
| StyI | CCWWGG | 2 cut(s) | 360, 1438 |
| TaiI | ACGT | 6 cut(s) | 318, 1188, 1420, 1464, 2008, 2118 |
| TaqI | TCGA | 7 cut(s) | 816, 1564, 1598, 2273, 2357, 2568, 3302 |
| TaqII | GACCGA | 1 cut(s) | 3029 |
| TatI | WGTACW | 2 cut(s) | 1156, 2988 |
| TauI | GCSGC | 1 cut(s) | 441 |
| Tru1I | TTAA | 9 cut(s) | 386, 488, 891, 963, 1431, 1613, 1727, 2063, 2808 |
| Tru9I | TTAA | 9 cut(s) | 386, 488, 891, 963, 1431, 1613, 1727, 2063, 2808 |
| TscAI | CASTG | 6 cut(s) | 22, 1505, 1629, 1970, 2434, 3427 |
| TseFI | GTSAC | 6 cut(s) | 230, 883, 1186, 1457, 2111, 3397 |
| TseI | GCWGC | 9 cut(s) | 90, 202, 265, 511, 1715, 1880, 2194, 2648, 3065 |
| Tsp45I | GTSAC | 6 cut(s) | 230, 883, 1186, 1457, 2111, 3397 |
| TspGWI | ACGGA | 4 cut(s) | 1271, 1509, 1979, 2794 |
| TspRI | CASTG | 6 cut(s) | 22, 1505, 1629, 1970, 2434, 3427 |
| Tth111I | GACNNNGTC | 2 cut(s) | 719, 1630 |
| VpaK11BI | GGWCC | 1 cut(s) | 1040 |
| VspI | ATTAAT | 1 cut(s) | 1727 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 740 |
| XapI | RAATTY | 3 cut(s) | 80, 581, 634 |
| XceI | RCATGY | 1 cut(s) | 1171 |
| XhoI | CTCGAG | 1 cut(s) | 3301 |
| XmiI | GTMKAC | 1 cut(s) | 2672 |
| XspI | CTAG | 7 cut(s) | 176, 534, 990, 1530, 1583, 1712, 2187 |
| Zsp2I | ATGCAT | 3 cut(s) | 373, 2076, 2852 |