Rh4DG127000

Autophagy-related protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0008019
Physical Location & Seq
Reverse (-)
20840018 .. 20846875
6858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG127000.1

Sequence Viewer

Length: 2790 bp
ATGAGTTCAAGCATCACCCAAGGCTTGGTTCATCAGGGCAAGCTTTTGGTTCATGTTGCTGAGAATGGGCACTCATTTGAGCTTGATTGTGAAGAAACCACACCGGTAGAGGCGGTTATGCGCTATATCGAATCAGTCTCTGATATCAATATCAATGACCAGCTCGTTCTGTGTTCTGATATGAAGCTTGAGCCGCAGCGCCCGCTCTCTGCTTATAAGCTTCCAGCTGATGGACAGGAAGTGTTTATATTCAATAAAGCGAGGCTGCAGACAAATTCATCCCCGCCTCCGCTGGAGCATGTCGACATTCTTGACATCGCCGAACCTCGATCACCCTCGGCTTCACACGATCGTCATCCTTTGGACGATGCTTCAGATCCTGCTTTGAAAGCCTTACCTTCTTATGAAAGGGAATTTAGGTTTCATTACCACAAGGGTCATGCGATTTACAGTCGAACCCAAGTGAAATATGACAATTGCGAAAGGCTTTTGAGGGAGCAAAAGGTTCAACAGAGGGCGGTGGAGGTTGCCAAGGGTAATTTGGATCAATACTATAGGATGATAAACCAGAACTATACAGAATTCATGAAGCGATATTCACATCAACATCGAATTCATTCTGATCTTTTGGTGAATCTGGGAAGGGATGTAGAAAAACTGAGATCCATCAAGCTTCATCCTGCGTTACAAACTGCCAACCGTAAATGCTTATCGGATTTTGTAAAGGAAGAGAACCTGAGGAAAGTGGGGGAGAATTGTACCAGTTCCCATAAACTGTTTGAGAATAAGGTTTCACAGTTCAAGCAGATGTTTGGTGAGGTGAAGCGGAGAGTTGAGGAATTGTTTTCTAACACGGCACCTCTGCCTATTAGGGATTGGGAACTGACAATTAAGGAGCACCAACGATATATTAACGAGCAGAAGAGTATAATGCAGTCATTGAGCAAAGATGTAAATACCGTCAAGAAACTTGTGGATGATTGCTTGTCTTCCCAGTTGTCTTCCTCACTTCGTCCTCATGATGCGGTTTCAGCCTTGGGCCCTATGTATGATGTCCATGACAAAAATCACCTGCCTAGGATGCAGGCTTGTGATAATAAAATTTCCAAGCTACTTGAAGTTTGCAAGGATAAAAAGAATCAAATGAACATGTTTCTTCATAATTATATGCAAAAGATAACATATATCTCTTATATCATTAAAGATGCAAAGCTACAGTTTCCTGTTTTTAGAGAGGCAATGGTGCGCCAGGATGATTTGTTTTTTGAAATAAAGTTGGTTCGCGGGATTGGACCAGCATATAGAGCCTGCCTAGCAGAAATAGTAAGAAGAAAGGCTTCCCTAAAGCTCTACATGGGCATGGCTGGACAGTTAGCTGAGAGGCTTGCAACAAAGAGGGAGGCTGAGGTCAGGAGACGGGAGGAGTTTCTGAAAGTTCATAGTTCATACATACCCAGGGATGTATTAGCATCCATGGGTTTATATGATACCCCCAATCAGTGTGATGTCAATATAGCTCCTTTTGATACTGGTTTGCTTGATGTTGACATTTCAGACCTGGACCGTTATGCACCTGATTACTTGGCAGGACTGTCTTCTAAGGGTTCTTTTAGAGGTTCATATTCTATGTCTAATGAAAGCAGTCAATCAGCAGAGGCTGAGGAGCTTACATTGGATAGCCTTGAGAAATCTGAGGAGCTAATTGAAGGCAGTGAATTGGTAGAGATTGCTGGAACTAGTAAGATAGAAGTTGAGAATGCAAAATTGAAAGCTGAACTGGCTTCTGCAATAGCTGTGATTTGTTCATTCTGGCCTGAAGTAGACTTTGAATCATTGGATGACAGTAAAATGGATAATTTATTGAAGGATGCTGCAGAGAAAACAGCTGAAGCCTTGCACCTGAAAGATGAGTATGGAAAGCATTTGCAATCTATGCTTAGGACGAAGCAGCTGCAGTGTCTTTCGTATGAGAAACGCATTCAAGAATTGGAACAGAGACTATCTGATCAGTATTTGCAAGGTCAGAAGCTTTCAAATGATAAGGATGCCGCTGATTTTACCCTTTTGTCTGATAAGGTTGATAACTGCAAGCAAGAAGTCTTAGGTAGAGGAGATGCCCGCATGCCTTGCTTATCTAATTCTGAGCCCATGGATGAGGTTTCCTGCATCTCAAATTCTTTGGATGCCAAATTGGGTCTTTTCAATGCACAAGCTGATAAAATGCGAGATGGGGCTGATGAAAATATGATGGACTCTTCTGCAGTACATAATCATCAAATGGATTCATCAATGCAAGAGCTAAATCGTGAAGATCTGCTAGTCAGTGGTAAAGATGGCAAAGAAAAAATGGTGGGGCAGCTGGGCATGTCACTGACACACAGTTCTACTGCTGAAAGCATGCCTGAACATCTGAATGTGTCTCCTTGCGAAACAGCAGCTGACCCAGGCTTTGGCACCAAGGTCAGTACTGAGCTGTTGTTGGAATTGGAAACTCTACTTGCAAACAAGTCAAACCAGTTGAACGAAACAGAGGTCAAGCTTAAAGCTTCTATGGAGGATGTTGCCATGCTTAAGAGGGAATTGGACACAAATAGGAAGCTCCTTGATGAATCTCAGGTATTGCAACCTGTACATCTGACTACTCTTCATTTCTTCATTTGCAATTTTAATCTCCCTTTCTCTTGCCCCTTCCCACAAACATACTTTGTAGTTAAGCATGTTTGGTTGGATGTCACGGCTTCTTCCCCTTTATTCATACGTGGTTACATTCTTGTGATTTTGGAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000272 GO:0000407 GO:0000422 GO:0001932 GO:0001934 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0005911 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009506 GO:0009893 GO:0009987 GO:0010150 GO:0010562 GO:0010604 GO:0015980 GO:0016020 GO:0016043 GO:0016052 GO:0016236 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022411 GO:0022607 GO:0030054 GO:0030242 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032947 GO:0032991 GO:0034045 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0055044 GO:0055114 GO:0060255 GO:0061695 GO:0061709 GO:0061723 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0090693 GO:0098805 GO:0099402 GO:1901575 GO:1902494 GO:1902554 GO:1902911 GO:1903008 GO:1905037 GO:1990234 GO:1990316
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04139 map04136 map04138 map04139
Pfam Domains
Protein Families
APG17 ATG11

Protein Analysis

929

Amino Acids

105.63

Weight (kDa)

5.61

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG17_like PF04108 147 - 484 1.1e-31 Autophagy protein ATG17-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AarI CACCTGC 1 cut(s) 1080
Acc36I ACCTGC 1 cut(s) 1080
AccB1I GGYRCC 2 cut(s) 856, 2453
AccB7I CCANNNNNTGG 3 cut(s) 25, 230, 2450
AccBSI CCGCTC 1 cut(s) 205
AccI GTMKAC 2 cut(s) 303, 1821
AccII CGCG 1 cut(s) 1284
AclWI GGATC 3 cut(s) 371, 552, 657
AcsI RAATTY 6 cut(s) 274, 413, 581, 612, 1101, 2173
AcuI CTGAAG 3 cut(s) 357, 1836, 1908
AfaI GTAC 4 cut(s) 760, 2265, 2467, 2631
AfiI CCNNNNNNNGG 3 cut(s) 25, 230, 2450
AflII CTTAAG 1 cut(s) 2570
AflIII ACRYGT 1 cut(s) 1149
AgeI ACCGGT 1 cut(s) 103
AhlI ACTAGT 1 cut(s) 1736
AjnI CCWGG 4 cut(s) 1248, 1454, 1557, 2443
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
Alw21I GWGCWC 1 cut(s) 900
Alw26I GTCTC 4 cut(s) 142, 1408, 1990, 2424
AlwI GGATC 3 cut(s) 371, 552, 657
AlwNI CAGNNNCTG 4 cut(s) 140, 380, 1658, 2438
AoxI GGCC 2 cut(s) 1039, 1811
ApaI GGGCCC 1 cut(s) 1043
ApeKI GCWGC 7 cut(s) 196, 265, 1871, 1948, 1951, 2356, 2435
ApoI RAATTY 6 cut(s) 274, 413, 581, 612, 1101, 2173
ArsI GACNNNNNNTTYG 4 cut(s) 2432, 2464, 2517, 2549
AsiGI ACCGGT 1 cut(s) 103
Asp700I GAANNNNTTC 2 cut(s) 616, 1336
AspA2I CCTAGG 1 cut(s) 1076
AspLEI GCGC 3 cut(s) 123, 201, 1248
AspS9I GGNCC 4 cut(s) 1039, 1040, 1292, 1561
AsuHPI GGTGA 6 cut(s) 7, 324, 643, 827, 832, 1061
AvaII GGWCC 2 cut(s) 1292, 1561
AvrII CCTAGG 1 cut(s) 1076
AxyI CCTNAGG 1 cut(s) 737
BaeGI GKGCMC 2 cut(s) 72, 1043
BanI GGYRCC 2 cut(s) 856, 2453
BanII GRGCYC 2 cut(s) 1043, 2148
BbsI GAAGAC 3 cut(s) 981, 993, 1587
Bbv12I GWGCWC 1 cut(s) 900
BbvCI CCTCAGC 2 cut(s) 1404, 1659
BbvI GCAGC 7 cut(s) 208, 252, 1858, 1938, 1960, 2368, 2447
BccI CCATC 5 cut(s) 224, 674, 2222, 2242, 2327
BceAI ACGGC 2 cut(s) 870, 2751
BcgI CGANNNNNNTGC 2 cut(s) 1933, 1967
BciT130I CCWGG 4 cut(s) 1250, 1456, 1559, 2445
BclI TGATCA 1 cut(s) 2005
BcoDI GTCTC 4 cut(s) 142, 1408, 1990, 2424
BcuI ACTAGT 1 cut(s) 1736
BfaI CTAG 4 cut(s) 1077, 1313, 1737, 2318
BfmI CTRYAG 6 cut(s) 266, 553, 1214, 1872, 1952, 2259
BfoI RGCGCY 1 cut(s) 202
BfrI CTTAAG 1 cut(s) 2570
BfuAI ACCTGC 1 cut(s) 1080
BglII AGATCT 1 cut(s) 2311
BisI GCNGC 9 cut(s) 194, 197, 266, 1872, 1949, 1952, 2049, 2357, 2436
BlnI CCTAGG 1 cut(s) 1076
BlsI GCNGC 9 cut(s) 195, 198, 267, 1873, 1950, 1953, 2050, 2358, 2437
BmcAI AGTACT 1 cut(s) 2467
Bme1390I CCNGG 4 cut(s) 1250, 1456, 1559, 2445
Bme18I GGWCC 2 cut(s) 1292, 1561
BmgT120I GGNCC 4 cut(s) 1039, 1040, 1292, 1561
BmiI GGNNCC 3 cut(s) 858, 1041, 2455
BmrFI CCNGG 4 cut(s) 1250, 1456, 1559, 2445
BmrI ACTGGG 1 cut(s) 988
BmuI ACTGGG 1 cut(s) 988
BpiI GAAGAC 3 cut(s) 981, 993, 1587
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 3 cut(s) 1404, 1659, 1937
BpuEI CTTGAG 2 cut(s) 209, 1703
BsaAI YACGTR 1 cut(s) 2759
BsaBI GATNNNNATC 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 230, 2450
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 5 cut(s) 762, 994, 1534, 1782, 2515
Bse21I CCTNAGG 1 cut(s) 737
Bse3DI GCAATG 1 cut(s) 1245
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 4 cut(s) 1250, 1456, 1559, 2445
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 3 cut(s) 25, 230, 2450
BseMI GCAATG 1 cut(s) 1245
BseNI ACTGG 5 cut(s) 762, 994, 1534, 1782, 2515
BseRI GAGGAG 4 cut(s) 1436, 1676, 1709, 2124
BseSI GKGCMC 2 cut(s) 72, 1043
BseXI GCAGC 7 cut(s) 208, 252, 1858, 1938, 1960, 2368, 2447
BseYI CCCAGC 1 cut(s) 2359
Bsh1236I CGCG 1 cut(s) 1284
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 2 cut(s) 1041, 1813
BshNI GGYRCC 2 cut(s) 856, 2453
BshTI ACCGGT 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 900
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 3 cut(s) 25, 230, 2450
BsmAI GTCTC 4 cut(s) 142, 1408, 1990, 2424
BsmBI CGTCTC 1 cut(s) 1408
BsmI GAATGC 2 cut(s) 1762, 1977
BsnI GGCC 2 cut(s) 1041, 1813
Bsp120I GGGCCC 1 cut(s) 1039
Bsp1286I GDGCHC 4 cut(s) 72, 900, 1043, 2148
Bsp1407I TGTACA 1 cut(s) 2629
Bsp143I GATC 8 cut(s) 329, 349, 376, 544, 622, 662, 2005, 2311
Bsp19I CCATGG 2 cut(s) 1473, 2148
BspANI GGCC 2 cut(s) 1041, 1813
BspFNI CGCG 1 cut(s) 1284
BspHI TCATGA 2 cut(s) 585, 1018
BspLI GGNNCC 3 cut(s) 858, 1041, 2455
BspMAI CTGCAG 4 cut(s) 270, 1876, 1956, 2263
BspMI ACCTGC 1 cut(s) 1080
BspPI GGATC 3 cut(s) 371, 552, 657
BspT107I GGYRCC 2 cut(s) 856, 2453
BspTI CTTAAG 1 cut(s) 2570
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 1245
BsrFI RCCGGY 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 2629
BsrI ACTGG 5 cut(s) 762, 994, 1534, 1782, 2515
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 8 cut(s) 329, 349, 376, 544, 622, 662, 2005, 2311
BssT1I CCWWGG 7 cut(s) 19, 531, 1035, 1076, 1473, 2148, 2457
Bst2UI CCWGG 4 cut(s) 1250, 1456, 1559, 2445
Bst6I CTCTTC 4 cut(s) 723, 917, 2260, 2649
BstAFI CTTAAG 1 cut(s) 2570
BstAPI GCANNNNNTGC 2 cut(s) 1933, 2127
BstAUI TGTACA 1 cut(s) 2629
BstBAI YACGTR 1 cut(s) 2759
BstC8I GCNNGC 9 cut(s) 41, 203, 1086, 1309, 1386, 2090, 2119, 2123, 2399
BstDSI CCRYGG 2 cut(s) 1473, 2148
BstFNI CGCG 1 cut(s) 1284
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 3 cut(s) 123, 201, 1248
BstKTI GATC 8 cut(s) 332, 352, 379, 547, 625, 665, 2008, 2314
BstMAI GTCTC 4 cut(s) 142, 1408, 1990, 2424
BstMBI GATC 8 cut(s) 329, 349, 376, 544, 622, 662, 2005, 2311
BstMCI CGRYCG 1 cut(s) 352
BstNI CCWGG 4 cut(s) 1250, 1456, 1559, 2445
BstNSI RCATGY 6 cut(s) 302, 1153, 2125, 2368, 2401, 2720
BstSCI CCNGG 4 cut(s) 1248, 1454, 1557, 2443
BstSFI CTRYAG 6 cut(s) 266, 553, 1214, 1872, 1952, 2259
BstSLI GKGCMC 2 cut(s) 72, 1043
BstUI CGCG 1 cut(s) 1284
BstV1I GCAGC 7 cut(s) 208, 252, 1858, 1938, 1960, 2368, 2447
BstV2I GAAGAC 3 cut(s) 981, 993, 1587
BstX2I RGATCY 3 cut(s) 376, 662, 2311
BstYI RGATCY 3 cut(s) 376, 662, 2311
Bsu36I CCTNAGG 1 cut(s) 737
BsuRI GGCC 2 cut(s) 1041, 1813
BtgI CCRYGG 2 cut(s) 1473, 2148
BtgZI GCGATG 1 cut(s) 301
BtsI GCAGTG 2 cut(s) 1717, 1961
BtsIMutI CAGTG 5 cut(s) 1505, 1717, 1961, 2329, 2369
BveI ACCTGC 1 cut(s) 1080
Cac8I GCNNGC 9 cut(s) 41, 203, 1086, 1309, 1386, 2090, 2119, 2123, 2399
CaiI CAGNNNCTG 4 cut(s) 140, 380, 1658, 2438
CciI TCATGA 2 cut(s) 585, 1018
CfoI GCGC 3 cut(s) 123, 201, 1248
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 4 cut(s) 1039, 1040, 1292, 1561
Csp6I GTAC 4 cut(s) 759, 2264, 2466, 2630
CspAI ACCGGT 1 cut(s) 103
CviQI GTAC 4 cut(s) 759, 2264, 2466, 2630
DpnI GATC 8 cut(s) 331, 351, 378, 546, 624, 664, 2007, 2313
DpnII GATC 8 cut(s) 329, 349, 376, 544, 622, 662, 2005, 2311
Eam1104I CTCTTC 4 cut(s) 723, 917, 2260, 2649
EarI CTCTTC 4 cut(s) 723, 917, 2260, 2649
Eco130I CCWWGG 7 cut(s) 19, 531, 1035, 1076, 1473, 2148, 2457
Eco24I GRGCYC 2 cut(s) 1043, 2148
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 1292, 1561
Eco57I CTGAAG 3 cut(s) 357, 1836, 1908
Eco81I CCTNAGG 1 cut(s) 737
EcoO109I RGGNCCY 1 cut(s) 1040
EcoRI GAATTC 2 cut(s) 581, 612
EcoRII CCWGG 4 cut(s) 1248, 1454, 1557, 2443
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 7 cut(s) 19, 531, 1035, 1076, 1473, 2148, 2457
EcoT38I GRGCYC 2 cut(s) 1043, 2148
ErhI CCWWGG 7 cut(s) 19, 531, 1035, 1076, 1473, 2148, 2457
Esp3I CGTCTC 1 cut(s) 1408
FalI AAGNNNNNCTT 2 cut(s) 1321, 1353
FauI CCCGC 4 cut(s) 210, 291, 1277, 2126
FbaI TGATCA 1 cut(s) 2005
FblI GTMKAC 2 cut(s) 303, 1821
Fnu4HI GCNGC 9 cut(s) 194, 197, 266, 1872, 1949, 1952, 2049, 2357, 2436
FriOI GRGCYC 2 cut(s) 1043, 2148
Fsp4HI GCNGC 9 cut(s) 194, 197, 266, 1872, 1949, 1952, 2049, 2357, 2436
FspBI CTAG 4 cut(s) 1077, 1313, 1737, 2318
GlaI GCGC 3 cut(s) 122, 200, 1247
GluI GCNGC 9 cut(s) 194, 197, 266, 1872, 1949, 1952, 2049, 2357, 2436
GsaI CCCAGC 1 cut(s) 2363
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 2 cut(s) 1041, 1813
HapII CCGG 1 cut(s) 104
HhaI GCGC 3 cut(s) 123, 201, 1248
Hin6I GCGC 3 cut(s) 121, 199, 1246
HinP1I GCGC 3 cut(s) 121, 199, 1246
HincII GTYRAC 2 cut(s) 304, 1546
HindII GTYRAC 2 cut(s) 304, 1546
HindIII AAGCTT 7 cut(s) 41, 185, 218, 671, 2027, 2537, 2544
HinfI GANTC 7 cut(s) 131, 634, 1138, 1829, 2252, 2282, 2609
HpaII CCGG 1 cut(s) 104
HphI GGTGA 6 cut(s) 7, 324, 643, 827, 832, 1061
Hpy166II GTNNAC 3 cut(s) 304, 1546, 1822
Hpy188III TCNNGA 7 cut(s) 311, 586, 964, 1019, 1411, 1982, 2306
Hpy8I GTNNAC 3 cut(s) 304, 1546, 1822
HpyAV CCTTC 5 cut(s) 408, 636, 1700, 1858, 2698
HpyCH4IV ACGT 1 cut(s) 2758
HpySE526I ACGT 1 cut(s) 2758
HspAI GCGC 3 cut(s) 121, 199, 1246
Ksp22I TGATCA 1 cut(s) 2005
Kzo9I GATC 8 cut(s) 329, 349, 376, 544, 622, 662, 2005, 2311
LmnI GCTCC 7 cut(s) 295, 496, 895, 1522, 1663, 1696, 2604
Lsp1109I GCAGC 7 cut(s) 208, 252, 1858, 1938, 1960, 2368, 2447
MaeI CTAG 4 cut(s) 1077, 1313, 1737, 2318
MaeII ACGT 1 cut(s) 2758
MaeIII GTNAC 4 cut(s) 684, 2367, 2731, 2762
MalI GATC 8 cut(s) 331, 351, 378, 546, 624, 664, 2007, 2313
MbiI CCGCTC 1 cut(s) 205
MboI GATC 8 cut(s) 329, 349, 376, 544, 622, 662, 2005, 2311
MfeI CAATTG 1 cut(s) 475
MflI RGATCY 3 cut(s) 376, 662, 2311
MhlI GDGCHC 4 cut(s) 72, 900, 1043, 2148
MlyI GAGTC 1 cut(s) 2246
MmeI TCCRAC 2 cut(s) 2460, 2706
MroXI GAANNNNTTC 2 cut(s) 616, 1336
MseI TTAA 7 cut(s) 891, 912, 1200, 2541, 2571, 2667, 2712
MslI CAYNNNNRTG 3 cut(s) 1358, 2412, 2771
MspA1I CMGCKG 7 cut(s) 227, 292, 1886, 1951, 2051, 2359, 2438
MspCI CTTAAG 1 cut(s) 2570
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 4 cut(s) 1250, 1456, 1559, 2445
MunI CAATTG 1 cut(s) 475
Mva1269I GAATGC 2 cut(s) 1762, 1977
MvaI CCWGG 4 cut(s) 1250, 1456, 1559, 2445
MvnI CGCG 1 cut(s) 1284
NcoI CCATGG 2 cut(s) 1473, 2148
NdeII GATC 8 cut(s) 329, 349, 376, 544, 622, 662, 2005, 2311
NlaIV GGNNCC 3 cut(s) 858, 1041, 2455
NmeAIII GCCGAG 1 cut(s) 317
NmuCI GTSAC 2 cut(s) 2367, 2731
NspI RCATGY 6 cut(s) 302, 1153, 2125, 2368, 2401, 2720
PaeI GCATGC 2 cut(s) 2125, 2401
PagI TCATGA 2 cut(s) 585, 1018
PaqCI CACCTGC 1 cut(s) 1080
PasI CCCWGGG 1 cut(s) 1455
PciI ACATGT 1 cut(s) 1149
PctI GAATGC 2 cut(s) 1762, 1977
PdmI GAANNNNTTC 2 cut(s) 616, 1336
PfeI GAWTC 6 cut(s) 131, 634, 1138, 1829, 2282, 2609
PflMI CCANNNNNTGG 3 cut(s) 25, 230, 2450
PinAI ACCGGT 1 cut(s) 103
PkrI GCNGC 9 cut(s) 195, 198, 267, 1873, 1950, 1953, 2050, 2358, 2437
Ple19I CGATCG 1 cut(s) 352
PleI GAGTC 1 cut(s) 2246
PpsI GAGTC 1 cut(s) 2246
Ppu21I YACGTR 1 cut(s) 2759
PscI ACATGT 1 cut(s) 1149
PsiI TTATAA 1 cut(s) 216
Psp6I CCWGG 4 cut(s) 1248, 1454, 1557, 2443
PspFI CCCAGC 1 cut(s) 2359
PspGI CCWGG 4 cut(s) 1248, 1454, 1557, 2443
PspN4I GGNNCC 3 cut(s) 858, 1041, 2455
PspOMI GGGCCC 1 cut(s) 1039
PspPI GGNCC 4 cut(s) 1039, 1040, 1292, 1561
PstI CTGCAG 4 cut(s) 270, 1876, 1956, 2263
PstNI CAGNNNCTG 4 cut(s) 140, 380, 1658, 2438
PsuI RGATCY 3 cut(s) 376, 662, 2311
PvuI CGATCG 1 cut(s) 352
PvuII CAGCTG 5 cut(s) 227, 1886, 1951, 2359, 2438
RsaI GTAC 4 cut(s) 760, 2265, 2467, 2631
RsaNI GTAC 4 cut(s) 759, 2264, 2466, 2630
RseI CAYNNNNRTG 3 cut(s) 1358, 2412, 2771
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 7 cut(s) 891, 912, 1200, 2541, 2571, 2667, 2712
SatI GCNGC 9 cut(s) 194, 197, 266, 1872, 1949, 1952, 2049, 2357, 2436
Sau3AI GATC 8 cut(s) 329, 349, 376, 544, 622, 662, 2005, 2311
Sau96I GGNCC 4 cut(s) 1039, 1040, 1292, 1561
ScaI AGTACT 1 cut(s) 2467
SchI GAGTC 1 cut(s) 2246
ScrFI CCNGG 4 cut(s) 1250, 1456, 1559, 2445
SduI GDGCHC 4 cut(s) 72, 900, 1043, 2148
SfcI CTRYAG 6 cut(s) 266, 553, 1214, 1872, 1952, 2259
SinI GGWCC 2 cut(s) 1292, 1561
SmiMI CAYNNNNRTG 3 cut(s) 1358, 2412, 2771
SmlI CTYRAG 3 cut(s) 188, 1682, 2570
SmoI CTYRAG 3 cut(s) 188, 1682, 2570
SpeI ACTAGT 1 cut(s) 1736
SphI GCATGC 2 cut(s) 2125, 2401
SspMI CTAG 4 cut(s) 1077, 1313, 1737, 2318
StyD4I CCNGG 4 cut(s) 1248, 1454, 1557, 2443
StyI CCWWGG 7 cut(s) 19, 531, 1035, 1076, 1473, 2148, 2457
TaiI ACGT 1 cut(s) 2761
TaqI TCGA 5 cut(s) 129, 303, 328, 454, 610
TatI WGTACW 3 cut(s) 2263, 2465, 2629
TauI GCSGC 2 cut(s) 196, 2051
TfiI GAWTC 6 cut(s) 131, 634, 1138, 1829, 2282, 2609
Tru1I TTAA 7 cut(s) 891, 912, 1200, 2541, 2571, 2667, 2712
Tru9I TTAA 7 cut(s) 891, 912, 1200, 2541, 2571, 2667, 2712
TscAI CASTG 5 cut(s) 1505, 1717, 1961, 2329, 2376
TseFI GTSAC 2 cut(s) 2367, 2731
TseI GCWGC 7 cut(s) 196, 265, 1871, 1948, 1951, 2356, 2435
Tsp45I GTSAC 2 cut(s) 2367, 2731
TspRI CASTG 5 cut(s) 1505, 1717, 1961, 2329, 2376
Van91I CCANNNNNTGG 3 cut(s) 25, 230, 2450
Vha464I CTTAAG 1 cut(s) 2570
VpaK11BI GGWCC 2 cut(s) 1292, 1561
XapI RAATTY 6 cut(s) 274, 413, 581, 612, 1101, 2173
XceI RCATGY 6 cut(s) 302, 1153, 2125, 2368, 2401, 2720
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XmaJI CCTAGG 1 cut(s) 1076
XmiI GTMKAC 2 cut(s) 303, 1821
XmnI GAANNNNTTC 2 cut(s) 616, 1336
XspI CTAG 4 cut(s) 1077, 1313, 1737, 2318
ZrmI AGTACT 1 cut(s) 2467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.