FvH4_4g10150

Autophagy-related protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008019
Physical Location & Seq
Forward (+)
13160802 .. 13171659
10858 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10150.t5

Sequence Viewer

Length: 3435 bp
ATGAGTTCAAGTAGCACTGGGGGTTTGGTTCATGAGGGTAAGCTTTTGGTGCATATTGCTGAAAATGGGCACTCATTTGAGCTTGATTGTGAAGAAACCACATCTGTAGAGGCAGTTATGCGGTATATTGAATCACTGTCTGATATCAATATCAATGACCAGCTTGTTCTGTGTTTGGATATGAAGCTTGAGCCACAGCGGCCACTTTCTGCTTATAAGCTTCCAGCTGATGGCCAGGATGTGTTCATATTCAATAAAGCAAGGCTGCAACCAAATTCTTCCCCTCCTCCTGTTGAGCATGTTGATATTCTTGACATCGCTGAACCCAGATCACCCTCGGCTTCACATGATCGTCATGCTCTGGATGACGCTTCAGATCCTGCTTTGAAAGCCTTACCTTCTTATGAAAGGGAATTCAGGTTTCATTACCACAAGGGTCATGCAATTTACAGTCGAACCCAAGTGAAATATGAGAATTGTGAAAGGCTTCTGAGGGAGCAAAAGGTTCAACAGAGGGCGGTGGAGGTTGCCAAGGGTAATTTGGATCAATATTATAGGATGATAAACCAGAACTATACAGAATTCATGAAGCGATATTCACAACAACATCGGATTCATTCTGATCTTTTGGTGAACCTTGGGAGGGATGTAGAAAAACTGAGATCCATCAAGCTTCATCCTGCATTACAAACTGTTAACCGTAAATGCTTATCGGATTTTGTAAAGGAAGAGAATCTGAGGAAAGTGAGGGAGAATTGTACCAGTTCCCATAAACAGTTTGAGAATAAGGTTTCACAGTTCAAGCAGATGTTTAGTGAGGTGAAGCGAAAAGTTGAGGAACTGTTTTCTAACATGGCATCTTTGCCTATTAGGAATTTGGAATTGACAATTAAGGAGCACCAACGATATCTTAATGAGCAGAAGAGTATAATGCAGTCATTGAGCAAAGATGTGAATACTGTCAAGAAGCTTGTGGATGACTGCTTGTCTTCACAAATGTCTTCCTCACTTCGTCCTCATGATGCGGTTTCAGCCTTGGGCCCTATGTATGATGTCCATGACAAAAATCACCTGCCTAGGATGCAGGCTTGTGATAATGCAATTTCCAAGCTACTTGACTTTTGCAAGGACAAAAAGAATGAAATGAACATGTTTCTTCATAATTATATGCAAAAGATAACATATATCTCTTATATCATCAAAGATGCGAAGTTACAGTTTCCTGTTTTTAAAGAGGCAATGGTGCGCCAGGATGATTTGTTTTTTGAAATCAAGTTGGTTCGTGGGATTGGCCCAGCATATAGAGCCTGCCTAGCAGAGATAGTAAGAAGAAAGGCTTCCCTAAAGCTCTACATGGGCATGGCTGGACAGTTAGCTGAGAGGCTTGCAACAAAGAGGGAGGCTGAGGTCAGGAGACGGGAAGAGTTTCTGAAAGTTCATAGTTCGTTCATACCCAGGGATGTATTAGCATCTATGGGTTTATATGATACCCCCAATCACTGTGATGTCAATATAGCTCCCTTTGATACTGGTTTACTTGATGTTGACATTTCAGACCTGGACCGTTATGCACCTGAGTACCTGACAGGACTGTCTTCTAAGGGTTCTTTTAGAGGTTCATTTTCTATGTCTAATGAGAGCAGTCATTCTGCAGAGGCTGAGGAGCTTACATTAGATGACCTTGAGAAATGTGACTCTGAGGAGCTACTTGAAGGCTGTGAATTAGTAGAGATTGCTGGAACTAGTAAGTTGGAAGTTGAGAATGCAAAACTGAAAGCTGAACTGGCTTCTGCAATAGCTTTGATTTGTTCATTCTGGCCTGACGCGGACTTTGAATCATTGAATGACAGTAAAACAGATAATTTATTGAAGGATGCTGCAGCGAAAACAGCTGAAGCCTTGCACCTCAAAGATGAGTATGGAAAGCATTTGCAATCTATGCTTAGGACGAAGCAGCTGCAGTGTCTTTCGTATGAGAAACGCATTCAAGAATTGGAACAGAGACTATCTGATCAGTATTTGCAAGGTCAGAAGCTTTCAAATGATAAGGATGCCTCTAAGTTCACCCTTTTGTCTGATAAGGTTGATGACTGCAAGCAAGTATTAGGTAGTGGAGAAGCCCGCACGCCTTGCTTATCTAATACTGAGCCCATGGATGAGGTCTCATGCATCTCAAATTCTTTGGATGCCAAATTGGGTCTTTTCAATGCACGAGCTGATAAAATGCGAGATGGGGCTGATGAAAATATGATGGACTCTTCTGCAGTACATAATCATCAACTGGATTCATCAATGCAAGAGCTAAGTCGTGAAGAACTGCTAGGCAGTGGTAAAGATGGCAAAGAAAAAATAATGGGGCAGCTGGGCATGTCACTGACACACAGTTCTACTGCTGAAAGCATGCCTGAACATCTGAATGTGTCTCCTAGTGAAACAGCAGTTGACCCAGGCTATGGCACTAGAGTCAGTACTGAGCTGTTGTTGGAATTGGAAACTCTACTGAAAAACAAGTCAAACCAGTTGAATGAAACAGAAATCAAGCTTAAAACTGCTATGGAGGATGTTGCCATGCTTAAGCGGGAATTGGACACAAATAGGAAGCTCCTTGATGAATCTCAGATGAATTGTGCTCACTTGGAGAATTGTTTGCATGAAGCAAGAGAGGAAGCGCAAACTCATCTTTGTGCCGCTGATCGTAGGGCCTCAGAGTACAGTGCCCTGCGAGCATCTGCTGTGAAAATGCGTGGCCTTTTTGAAAGGCTTCGCAGCTGTGTTAATGCACAGGGAATGACTAGTTTCGTTGATTCTTTGCGTGGTTTAGCACAATCTCTGGGAAACTCTATTAATGACAATGAAGATGATGGTACCCTTGAGTTTCGGAAGTGTATCCGGGTCCTCGCTGATAGAGTTGGTTTCTTGTCAAGGCACCGTGAAGGGCTGCTCGACAAGTATCCAAAGGTCGAAGCTGCAAATGAACAGCTTAGAAAAGAATTGGAAGAGAAGAAGGATCTGGTTAAAACATTGTACACAAAGCATCAACTTGAGAAACAGGCAAACAAGGAGAAGATTTCTTTTGGCCGTATGGAAGTCCATGAGATAGCTGCATTTGTTCTCAATGCCACTGGGCATTACGAGGCGATCAATCGAAATTGCTCTAACTACTATCTCTCTGCTGAATCTGTTGCCCTATTTACAGATCATCTCCCACGTCAACCTAACTATATTGTTGGACAAATTGTGCATATTGAACGCCAGATTGTGAAGCCATCGGCTATTCCAATTCGGCTTGAGCATGAGCTAACATCTGACACAGGGACTGACCAGTTGGCCTTGAATTCAGGATCGAACCCATACGGTCTCCCTATTGGCTGTGAATACTTCGTAGTGACAGTAGCCATGTTACCTGACACCATTCATTCACCACCTCCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000272 GO:0000407 GO:0000422 GO:0001932 GO:0001934 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0005911 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009506 GO:0009893 GO:0009987 GO:0010150 GO:0010562 GO:0010604 GO:0015980 GO:0016020 GO:0016043 GO:0016052 GO:0016236 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022411 GO:0022607 GO:0030054 GO:0030242 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032947 GO:0032991 GO:0034045 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0055044 GO:0055114 GO:0060255 GO:0061695 GO:0061709 GO:0061723 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0090693 GO:0098805 GO:0099402 GO:1901575 GO:1902494 GO:1902554 GO:1902911 GO:1903008 GO:1905037 GO:1990234 GO:1990316
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04139 map04136 map04138 map04139
Pfam Domains
Protein Families
APG17 ATG11

Protein Analysis

1145

Amino Acids

129.46

Weight (kDa)

5.78

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG17_like PF04108 147 - 484 1.1e-33 Autophagy protein ATG17-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AarI CACCTGC 1 cut(s) 1080
AasI GACNNNNNNGTC 1 cut(s) 1591
Acc36I ACCTGC 1 cut(s) 1080
Acc65I GGTACC 1 cut(s) 2864
AccB1I GGYRCC 2 cut(s) 2864, 2925
AccB7I CCANNNNNTGG 2 cut(s) 230, 2453
AccII CGCG 1 cut(s) 1826
AciI CCGC 8 cut(s) 121, 199, 518, 1025, 1826, 2122, 2578, 2688
AclWI GGATC 5 cut(s) 371, 552, 657, 3015, 3349
AcoI YGGCCR 3 cut(s) 200, 232, 3076
AcsI RAATTY 6 cut(s) 274, 413, 581, 874, 2176, 3334
AcuI CTGAAG 2 cut(s) 357, 1914
AfaI GTAC 7 cut(s) 760, 1580, 2268, 2470, 2711, 2866, 3026
AfiI CCNNNNNNNGG 3 cut(s) 230, 643, 2453
AflII CTTAAG 1 cut(s) 2573
AflIII ACRYGT 1 cut(s) 1149
AhdI GACNNNNNGTC 1 cut(s) 985
AhlI ACTAGT 2 cut(s) 1742, 2792
AjiI CACGTC 1 cut(s) 3209
AjnI CCWGG 5 cut(s) 234, 1248, 1454, 1557, 2446
Alw21I GWGCWC 2 cut(s) 900, 2632
Alw26I GTCTC 5 cut(s) 1408, 1996, 2167, 2427, 3362
AlwI GGATC 5 cut(s) 371, 552, 657, 3015, 3349
AlwNI CAGNNNCTG 3 cut(s) 380, 1658, 3317
AoxI GGCC 9 cut(s) 200, 232, 1039, 1291, 1817, 2700, 2746, 3076, 3327
ApaI GGGCCC 1 cut(s) 1043
ApoI RAATTY 6 cut(s) 274, 413, 581, 874, 2176, 3334
ArsI GACNNNNNNTTYG 2 cut(s) 1814, 1846
AseI ATTAAT 1 cut(s) 2844
Asp700I GAANNNNTTC 4 cut(s) 486, 1336, 1425, 2760
Asp718I GGTACC 1 cut(s) 2864
AspA2I CCTAGG 1 cut(s) 1076
AspLEI GCGC 2 cut(s) 1248, 2671
AspS9I GGNCC 6 cut(s) 1039, 1040, 1292, 1561, 2700, 2893
AsuC2I CCSGG 1 cut(s) 2891
AsuHPI GGTGA 6 cut(s) 324, 643, 832, 1061, 2056, 3411
AvaII GGWCC 2 cut(s) 1561, 2893
AvrII CCTAGG 1 cut(s) 1076
BaeGI GKGCMC 3 cut(s) 72, 1043, 2719
BaeI ACNNNNGTAYC 2 cut(s) 1562, 1595
BalI TGGCCA 1 cut(s) 234
BanI GGYRCC 2 cut(s) 2864, 2925
BanII GRGCYC 2 cut(s) 1043, 2151
BauI CACGAG 1 cut(s) 2211
BbsI GAAGAC 3 cut(s) 981, 993, 1587
Bbv12I GWGCWC 2 cut(s) 900, 2632
BbvCI CCTCAGC 2 cut(s) 1404, 1659
BccI CCATC 7 cut(s) 224, 674, 2225, 2245, 2330, 2855, 3274
BceAI ACGGC 1 cut(s) 3063
BcgI CGANNNNNNTGC 2 cut(s) 1939, 1973
BciT130I CCWGG 5 cut(s) 236, 1250, 1456, 1559, 2448
BciVI GTATCC 2 cut(s) 2897, 2961
BclI TGATCA 1 cut(s) 2011
BcnI CCSGG 1 cut(s) 2891
BcoDI GTCTC 5 cut(s) 1408, 1996, 2167, 2427, 3362
BcuI ACTAGT 2 cut(s) 1742, 2792
BfaI CTAG 7 cut(s) 1077, 1313, 1743, 2321, 2427, 2460, 2793
BfmI CTRYAG 5 cut(s) 105, 1650, 1878, 1958, 2262
BfrI CTTAAG 1 cut(s) 2573
BfuAI ACCTGC 1 cut(s) 1080
BfuI GTATCC 2 cut(s) 2897, 2961
BglI GCCNNNNNGGC 1 cut(s) 199
BlnI CCTAGG 1 cut(s) 1076
BmcAI AGTACT 1 cut(s) 2470
Bme1390I CCNGG 6 cut(s) 236, 1250, 1456, 1559, 2448, 2891
Bme18I GGWCC 2 cut(s) 1561, 2893
BmeRI GACNNNNNGTC 1 cut(s) 985
BmgBI CACGTC 1 cut(s) 3209
BmgT120I GGNCC 6 cut(s) 1039, 1040, 1292, 1561, 2700, 2893
BmiI GGNNCC 4 cut(s) 1041, 2866, 2894, 2927
BmrFI CCNGG 6 cut(s) 236, 1250, 1456, 1559, 2448, 2891
BmrI ACTGGG 2 cut(s) 27, 3132
BmuI ACTGGG 2 cut(s) 27, 3132
BpiI GAAGAC 3 cut(s) 981, 993, 1587
Bpu10I CCTNAGC 3 cut(s) 1404, 1659, 1943
BpuEI CTTGAG 5 cut(s) 209, 1703, 2891, 3062, 3308
BpuMI CCSGG 1 cut(s) 2891
BsaI GGTCTC 2 cut(s) 2167, 3362
BsaJI CCNNGG 9 cut(s) 336, 531, 637, 1035, 1076, 1454, 1455, 2151, 2446
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 643, 2453
Bse1I ACTGG 8 cut(s) 22, 762, 1534, 1788, 2286, 2518, 3127, 3322
Bse3DI GCAATG 1 cut(s) 1245
BseBI CCWGG 5 cut(s) 236, 1250, 1456, 1559, 2448
BseDI CCNNGG 9 cut(s) 336, 531, 637, 1035, 1076, 1454, 1455, 2151, 2446
BseLI CCNNNNNNNGG 3 cut(s) 230, 643, 2453
BseMI GCAATG 1 cut(s) 1245
BseNI ACTGG 8 cut(s) 22, 762, 1534, 1788, 2286, 2518, 3127, 3322
BseRI GAGGAG 3 cut(s) 276, 1676, 1715
BseSI GKGCMC 3 cut(s) 72, 1043, 2719
BseYI CCCAGC 2 cut(s) 1294, 2362
Bsh1236I CGCG 1 cut(s) 1826
BshFI GGCC 9 cut(s) 202, 234, 1041, 1293, 1819, 2702, 2748, 3078, 3329
BshNI GGYRCC 2 cut(s) 2864, 2925
BsiHKAI GWGCWC 2 cut(s) 900, 2632
BsiSI CCGG 1 cut(s) 2890
BslFI GGGAC 1 cut(s) 3328
BslI CCNNNNNNNGG 3 cut(s) 230, 643, 2453
BsmAI GTCTC 5 cut(s) 1408, 1996, 2167, 2427, 3362
BsmBI CGTCTC 1 cut(s) 1408
BsmFI GGGAC 1 cut(s) 3328
BsmI GAATGC 2 cut(s) 1768, 1983
BsnI GGCC 9 cut(s) 202, 234, 1041, 1293, 1819, 2702, 2748, 3078, 3329
Bso31I GGTCTC 2 cut(s) 2167, 3362
Bsp120I GGGCCC 1 cut(s) 1039
Bsp1286I GDGCHC 6 cut(s) 72, 900, 1043, 2151, 2632, 2719
Bsp1407I TGTACA 1 cut(s) 3024
Bsp19I CCATGG 1 cut(s) 2151
BspACI CCGC 8 cut(s) 121, 199, 518, 1025, 1826, 2122, 2578, 2688
BspANI GGCC 9 cut(s) 202, 234, 1041, 1293, 1819, 2702, 2748, 3078, 3329
BspFNI CGCG 1 cut(s) 1826
BspHI TCATGA 3 cut(s) 31, 585, 1018
BspLI GGNNCC 4 cut(s) 1041, 2866, 2894, 2927
BspMAI CTGCAG 4 cut(s) 1654, 1882, 1962, 2266
BspMI ACCTGC 1 cut(s) 1080
BspPI GGATC 5 cut(s) 371, 552, 657, 3015, 3349
BspT107I GGYRCC 2 cut(s) 2864, 2925
BspTI CTTAAG 1 cut(s) 2573
BspTNI GGTCTC 2 cut(s) 2167, 3362
BsrDI GCAATG 1 cut(s) 1245
BsrGI TGTACA 1 cut(s) 3024
BsrI ACTGG 8 cut(s) 22, 762, 1534, 1788, 2286, 2518, 3127, 3322
BssECI CCNNGG 9 cut(s) 336, 531, 637, 1035, 1076, 1454, 1455, 2151, 2446
BssSI CACGAG 1 cut(s) 2211
BssT1I CCWWGG 5 cut(s) 531, 637, 1035, 1076, 2151
Bst2BI CACGAG 1 cut(s) 2211
Bst2UI CCWGG 5 cut(s) 236, 1250, 1456, 1559, 2448
Bst6I CTCTTC 5 cut(s) 723, 917, 1416, 2263, 2991
BstAFI CTTAAG 1 cut(s) 2573
BstAPI GCANNNNNTGC 2 cut(s) 1939, 2130
BstAUI TGTACA 1 cut(s) 3024
BstC8I GCNNGC 8 cut(s) 1086, 1309, 1386, 2096, 2122, 2126, 2402, 2724
BstDSI CCRYGG 1 cut(s) 2151
BstFNI CGCG 1 cut(s) 1826
BstHHI GCGC 2 cut(s) 1248, 2671
BstMAI GTCTC 5 cut(s) 1408, 1996, 2167, 2427, 3362
BstNI CCWGG 5 cut(s) 236, 1250, 1456, 1559, 2448
BstNSI RCATGY 4 cut(s) 302, 1153, 2371, 2404
BstSCI CCNGG 6 cut(s) 234, 1248, 1454, 1557, 2446, 2889
BstSFI CTRYAG 5 cut(s) 105, 1650, 1878, 1958, 2262
BstSLI GKGCMC 3 cut(s) 72, 1043, 2719
BstUI CGCG 1 cut(s) 1826
BstV2I GAAGAC 3 cut(s) 981, 993, 1587
BstX2I RGATCY 3 cut(s) 376, 662, 3007
BstYI RGATCY 3 cut(s) 376, 662, 3007
BsuI GTATCC 2 cut(s) 2897, 2961
BsuRI GGCC 9 cut(s) 202, 234, 1041, 1293, 1819, 2702, 2748, 3078, 3329
BtgI CCRYGG 1 cut(s) 2151
BtgZI GCGATG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 3209
BtsI GCAGTG 2 cut(s) 1967, 2332
BtsIMutI CAGTG 8 cut(s) 15, 134, 1498, 1967, 2332, 2372, 2719, 3120
BveI ACCTGC 1 cut(s) 1080
Cac8I GCNNGC 8 cut(s) 1086, 1309, 1386, 2096, 2122, 2126, 2402, 2724
CaiI CAGNNNCTG 3 cut(s) 380, 1658, 3317
CciI TCATGA 3 cut(s) 31, 585, 1018
CfoI GCGC 2 cut(s) 1248, 2671
Cfr13I GGNCC 6 cut(s) 1039, 1040, 1292, 1561, 2700, 2893
CseI GACGC 2 cut(s) 377, 1832
Csp6I GTAC 7 cut(s) 759, 1579, 2267, 2469, 2710, 2865, 3025
CviQI GTAC 7 cut(s) 759, 1579, 2267, 2469, 2710, 2865, 3025
DraI TTTAAA 1 cut(s) 1231
DrdI GACNNNNNNGTC 1 cut(s) 1591
DriI GACNNNNNGTC 1 cut(s) 985
DseDI GACNNNNNNGTC 1 cut(s) 1591
EaeI YGGCCR 3 cut(s) 200, 232, 3076
Eam1104I CTCTTC 5 cut(s) 723, 917, 1416, 2263, 2991
Eam1105I GACNNNNNGTC 1 cut(s) 985
EarI CTCTTC 5 cut(s) 723, 917, 1416, 2263, 2991
Eco130I CCWWGG 5 cut(s) 531, 637, 1035, 1076, 2151
Eco24I GRGCYC 2 cut(s) 1043, 2151
Eco31I GGTCTC 2 cut(s) 2167, 3362
Eco32I GATATC 2 cut(s) 145, 908
Eco47I GGWCC 2 cut(s) 1561, 2893
Eco57I CTGAAG 2 cut(s) 357, 1914
EcoO109I RGGNCCY 3 cut(s) 1040, 2700, 2893
EcoRI GAATTC 3 cut(s) 413, 581, 3334
EcoRII CCWGG 5 cut(s) 234, 1248, 1454, 1557, 2446
EcoRV GATATC 2 cut(s) 145, 908
EcoT14I CCWWGG 5 cut(s) 531, 637, 1035, 1076, 2151
EcoT22I ATGCAT 1 cut(s) 2171
EcoT38I GRGCYC 2 cut(s) 1043, 2151
ErhI CCWWGG 5 cut(s) 531, 637, 1035, 1076, 2151
Esp3I CGTCTC 1 cut(s) 1408
FalI AAGNNNNNCTT 2 cut(s) 1321, 1353
FaqI GGGAC 1 cut(s) 3328
FauI CCCGC 2 cut(s) 2129, 2571
FbaI TGATCA 1 cut(s) 2011
FriOI GRGCYC 2 cut(s) 1043, 2151
FspBI CTAG 7 cut(s) 1077, 1313, 1743, 2321, 2427, 2460, 2793
GlaI GCGC 2 cut(s) 1247, 2670
GsaI CCCAGC 2 cut(s) 1298, 2366
HaeIII GGCC 9 cut(s) 202, 234, 1041, 1293, 1819, 2702, 2748, 3078, 3329
HapII CCGG 1 cut(s) 2890
HgaI GACGC 2 cut(s) 377, 1832
HhaI GCGC 2 cut(s) 1248, 2671
Hin6I GCGC 2 cut(s) 1246, 2669
HinP1I GCGC 2 cut(s) 1246, 2669
HincII GTYRAC 4 cut(s) 697, 1546, 2443, 3212
HindII GTYRAC 4 cut(s) 697, 1546, 2443, 3212
HindIII AAGCTT 7 cut(s) 41, 185, 218, 671, 968, 2033, 2540
HpaI GTTAAC 1 cut(s) 697
HpaII CCGG 1 cut(s) 2890
HphI GGTGA 6 cut(s) 324, 643, 832, 1061, 2056, 3411
Hpy166II GTNNAC 8 cut(s) 634, 697, 1535, 1546, 2064, 2443, 3027, 3212
Hpy8I GTNNAC 8 cut(s) 634, 697, 1535, 1546, 2064, 2443, 3027, 3212
HpyAV CCTTC 5 cut(s) 408, 1706, 1864, 2927, 2998
HpyCH4IV ACGT 1 cut(s) 3208
HpySE526I ACGT 1 cut(s) 3208
HspAI GCGC 2 cut(s) 1246, 2669
KpnI GGTACC 1 cut(s) 2868
Ksp22I TGATCA 1 cut(s) 2011
KspAI GTTAAC 1 cut(s) 697
LmnI GCTCC 6 cut(s) 496, 895, 1522, 1663, 1702, 2607
MaeI CTAG 7 cut(s) 1077, 1313, 1743, 2321, 2427, 2460, 2793
MaeII ACGT 1 cut(s) 3208
MaeIII GTNAC 5 cut(s) 1212, 1691, 2370, 3385, 3399
MflI RGATCY 3 cut(s) 376, 662, 3007
MhlI GDGCHC 6 cut(s) 72, 900, 1043, 2151, 2632, 2719
MlsI TGGCCA 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 234
MlyI GAGTC 3 cut(s) 1688, 2249, 2472
MmeI TCCRAC 3 cut(s) 1731, 2463, 3208
Mox20I TGGCCA 1 cut(s) 234
Mph1103I ATGCAT 1 cut(s) 2171
MroXI GAANNNNTTC 4 cut(s) 486, 1336, 1425, 2760
MscI TGGCCA 1 cut(s) 234
MseI TTAA 9 cut(s) 696, 891, 912, 1230, 2544, 2574, 2775, 2844, 3015
MslI CAYNNNNRTG 4 cut(s) 1358, 1503, 2415, 2682
Msp20I TGGCCA 1 cut(s) 234
MspA1I CMGCKG 7 cut(s) 199, 227, 1892, 1957, 2362, 2690, 2769
MspCI CTTAAG 1 cut(s) 2573
MspI CCGG 1 cut(s) 2890
MspR9I CCNGG 6 cut(s) 236, 1250, 1456, 1559, 2448, 2891
Mva1269I GAATGC 2 cut(s) 1768, 1983
MvaI CCWGG 5 cut(s) 236, 1250, 1456, 1559, 2448
MvnI CGCG 1 cut(s) 1826
NciI CCSGG 1 cut(s) 2891
NcoI CCATGG 1 cut(s) 2151
NlaIV GGNNCC 4 cut(s) 1041, 2866, 2894, 2927
NmeAIII GCCGAG 1 cut(s) 317
NmuCI GTSAC 3 cut(s) 1691, 2370, 3385
NsiI ATGCAT 1 cut(s) 2171
NspI RCATGY 4 cut(s) 302, 1153, 2371, 2404
PaeI GCATGC 1 cut(s) 2404
PagI TCATGA 3 cut(s) 31, 585, 1018
PaqCI CACCTGC 1 cut(s) 1080
PasI CCCWGGG 1 cut(s) 1455
PciI ACATGT 1 cut(s) 1149
PctI GAATGC 2 cut(s) 1768, 1983
PdmI GAANNNNTTC 4 cut(s) 486, 1336, 1425, 2760
PfeI GAWTC 8 cut(s) 131, 613, 733, 1835, 2285, 2612, 2804, 3176
PflMI CCANNNNNTGG 2 cut(s) 230, 2453
PleI GAGTC 3 cut(s) 1688, 2249, 2471
PpsI GAGTC 3 cut(s) 1688, 2249, 2471
PpuMI RGGWCCY 1 cut(s) 2893
PscI ACATGT 1 cut(s) 1149
PshBI ATTAAT 1 cut(s) 2844
PsiI TTATAA 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 2893
Psp6I CCWGG 5 cut(s) 234, 1248, 1454, 1557, 2446
PspFI CCCAGC 2 cut(s) 1294, 2362
PspGI CCWGG 5 cut(s) 234, 1248, 1454, 1557, 2446
PspN4I GGNNCC 4 cut(s) 1041, 2866, 2894, 2927
PspOMI GGGCCC 1 cut(s) 1039
PspPI GGNCC 6 cut(s) 1039, 1040, 1292, 1561, 2700, 2893
PspPPI RGGWCCY 1 cut(s) 2893
PstI CTGCAG 4 cut(s) 1654, 1882, 1962, 2266
PstNI CAGNNNCTG 3 cut(s) 380, 1658, 3317
PsuI RGATCY 3 cut(s) 376, 662, 3007
PvuII CAGCTG 5 cut(s) 227, 1892, 1957, 2362, 2769
RsaI GTAC 7 cut(s) 760, 1580, 2268, 2470, 2711, 2866, 3026
RsaNI GTAC 7 cut(s) 759, 1579, 2267, 2469, 2710, 2865, 3025
RseI CAYNNNNRTG 4 cut(s) 1358, 1503, 2415, 2682
SaqAI TTAA 9 cut(s) 696, 891, 912, 1230, 2544, 2574, 2775, 2844, 3015
Sau96I GGNCC 6 cut(s) 1039, 1040, 1292, 1561, 2700, 2893
ScaI AGTACT 1 cut(s) 2470
SchI GAGTC 3 cut(s) 1688, 2249, 2472
ScrFI CCNGG 6 cut(s) 236, 1250, 1456, 1559, 2448, 2891
SduI GDGCHC 6 cut(s) 72, 900, 1043, 2151, 2632, 2719
SfcI CTRYAG 5 cut(s) 105, 1650, 1878, 1958, 2262
SinI GGWCC 2 cut(s) 1561, 2893
SmiMI CAYNNNNRTG 4 cut(s) 1358, 1503, 2415, 2682
SmlI CTYRAG 6 cut(s) 188, 1682, 2573, 2870, 3041, 3287
SmoI CTYRAG 6 cut(s) 188, 1682, 2573, 2870, 3041, 3287
SpeI ACTAGT 2 cut(s) 1742, 2792
SphI GCATGC 1 cut(s) 2404
SsiI CCGC 8 cut(s) 121, 199, 518, 1025, 1826, 2122, 2578, 2688
SspI AATATT 1 cut(s) 551
SspMI CTAG 7 cut(s) 1077, 1313, 1743, 2321, 2427, 2460, 2793
StyD4I CCNGG 6 cut(s) 234, 1248, 1454, 1557, 2446, 2889
StyI CCWWGG 5 cut(s) 531, 637, 1035, 1076, 2151
TaiI ACGT 1 cut(s) 3211
TaqI TCGA 5 cut(s) 454, 2943, 2961, 3145, 3344
TatI WGTACW 4 cut(s) 2266, 2468, 2709, 3024
TauI GCSGC 2 cut(s) 202, 2690
TfiI GAWTC 8 cut(s) 131, 613, 733, 1835, 2285, 2612, 2804, 3176
Tru1I TTAA 9 cut(s) 696, 891, 912, 1230, 2544, 2574, 2775, 2844, 3015
Tru9I TTAA 9 cut(s) 696, 891, 912, 1230, 2544, 2574, 2775, 2844, 3015
TscAI CASTG 8 cut(s) 22, 141, 1505, 1967, 2332, 2379, 2719, 3127
TseFI GTSAC 3 cut(s) 1691, 2370, 3385
Tsp45I GTSAC 3 cut(s) 1691, 2370, 3385
TspRI CASTG 8 cut(s) 22, 141, 1505, 1967, 2332, 2379, 2719, 3127
Van91I CCANNNNNTGG 2 cut(s) 230, 2453
Vha464I CTTAAG 1 cut(s) 2573
VpaK11BI GGWCC 2 cut(s) 1561, 2893
VspI ATTAAT 1 cut(s) 2844
XapI RAATTY 6 cut(s) 274, 413, 581, 874, 2176, 3334
XceI RCATGY 4 cut(s) 302, 1153, 2371, 2404
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XmaJI CCTAGG 1 cut(s) 1076
XmnI GAANNNNTTC 4 cut(s) 486, 1336, 1425, 2760
XspI CTAG 7 cut(s) 1077, 1313, 1743, 2321, 2427, 2460, 2793
ZrmI AGTACT 1 cut(s) 2470
Zsp2I ATGCAT 1 cut(s) 2171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.