Rorug04G0060800

Autophagy-related protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008019
Physical Location & Seq
Reverse (-)
9493842 .. 9495503
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0060800.1

Sequence Viewer

Length: 579 bp
ATGAGCTTCGGCAAAAACTCCAAAGAGAGGTTTGTTGAATTAGGCCTAGATTTTTGTGCAGATAAGGTGTTTGATGAGATGCTTGTTAGTTACCTTCAGAATGACAGAGACGGTAGCTTGAAGAAGGCCTACAAAGAGTGGACTTTGGTTGGTGCATTGACCGCTTCTGGGCTTCCCACTGCCATTTATGCACTCCAGAATAGTTTGCTTCAGATTTCGTACAAGAATCTCGATTCTTTAACCTTCTCAATGCTCAACCAAACTAAGATCATTTTTATTGCTATCTGTACTTATTTGATATTGAGCTGTTCTTCTAAGTTTCGAGGAAGGGTTGAGCAAAAGTCCTCTCTGTGTCAATGGGCTTCCCAGGTTAAGAAGCACTGGTCATACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTTTGCTTGTTGGTTAGCACCACTAAGTCTCTCGAAGGAGAAGCTATCAGAAAACATGGGCTTTTCTATGGATGGATTCTACTGACTTGGATCCCAGTCAAGTCCAATGCCTTTGGTGGAATTCTTGTTGGCCTAGTTACTGTATTCTTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000272 GO:0000407 GO:0000422 GO:0001932 GO:0001934 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0005911 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009506 GO:0009893 GO:0009987 GO:0010150 GO:0010562 GO:0010604 GO:0015980 GO:0016020 GO:0016043 GO:0016052 GO:0016236 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022411 GO:0022607 GO:0030054 GO:0030242 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032947 GO:0032991 GO:0034045 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0055044 GO:0055114 GO:0060255 GO:0061695 GO:0061709 GO:0061723 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0090693 GO:0098805 GO:0099402 GO:1901575 GO:1902494 GO:1902554 GO:1902911 GO:1903008 GO:1905037 GO:1990234 GO:1990316
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04139 map04136 map04138 map04139
Pfam Domains
Protein Families
APG17 ATG11

Protein Analysis

192

Amino Acids

21.53

Weight (kDa)

9.07

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 58 - 102 8.5e-07 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AclWI GGATC 2 cut(s) 508, 521
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 2 cut(s) 80, 194
AfaI GTAC 2 cut(s) 221, 289
AfiI CCNNNNNNNGG 2 cut(s) 27, 168
AgsI TTSAA 2 cut(s) 38, 121
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 4 cut(s) 6, 117, 306, 467
AluI AGCT 4 cut(s) 6, 117, 306, 467
Alw26I GTCTC 2 cut(s) 102, 456
AlwI GGATC 2 cut(s) 508, 521
AoxI GGCC 4 cut(s) 43, 126, 553, 573
ApoI RAATTY 1 cut(s) 543
BamHI GGATCC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
BccI CCATC 1 cut(s) 489
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 2 cut(s) 102, 456
BfaI CTAG 3 cut(s) 47, 557, 577
BfmI CTRYAG 1 cut(s) 399
Bme1390I CCNGG 1 cut(s) 368
BmiI GGNNCC 1 cut(s) 515
BmrFI CCNGG 1 cut(s) 368
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 512
BpmI CTGGAG 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 366
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 168
Bse1I ACTGG 2 cut(s) 386, 518
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 500
BseLI CCNNNNNNNGG 2 cut(s) 27, 168
BseNI ACTGG 2 cut(s) 386, 518
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 4 cut(s) 45, 128, 555, 575
BslI CCNNNNNNNGG 2 cut(s) 27, 168
BsmAI GTCTC 2 cut(s) 102, 456
BsmBI CGTCTC 1 cut(s) 102
BsnI GGCC 4 cut(s) 45, 128, 555, 575
Bsp143I GATC 2 cut(s) 267, 513
BspACI CCGC 1 cut(s) 162
BspANI GGCC 4 cut(s) 45, 128, 555, 575
BspLI GGNNCC 1 cut(s) 515
BspPI GGATC 2 cut(s) 508, 521
BsrI ACTGG 2 cut(s) 386, 518
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 2 cut(s) 267, 513
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 113, 400, 565
BstDEI CTNAG 3 cut(s) 264, 315, 447
BstF5I GGATG 1 cut(s) 500
BstKTI GATC 2 cut(s) 270, 516
BstMAI GTCTC 2 cut(s) 102, 456
BstMBI GATC 2 cut(s) 267, 513
BstMWI GCNNNNNNNGC 2 cut(s) 161, 188
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 513
BstYI RGATCY 1 cut(s) 513
BsuRI GGCC 4 cut(s) 45, 128, 555, 575
BtsCI GGATG 1 cut(s) 500
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 177, 379
Csp6I GTAC 2 cut(s) 220, 288
CviAII CATG 1 cut(s) 479
CviQI GTAC 2 cut(s) 220, 288
DdeI CTNAG 3 cut(s) 264, 315, 447
DpnI GATC 2 cut(s) 269, 515
DpnII GATC 2 cut(s) 267, 513
Eco147I AGGCCT 2 cut(s) 45, 128
Eco57I CTGAAG 2 cut(s) 80, 194
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 1 cut(s) 482
FaiI YATR 4 cut(s) 189, 388, 480, 492
FatI CATG 1 cut(s) 478
FokI GGATG 1 cut(s) 507
FspBI CTAG 3 cut(s) 47, 557, 577
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 4 cut(s) 45, 128, 555, 575
Hin1II CATG 1 cut(s) 482
HinfI GANTC 3 cut(s) 226, 233, 499
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 3 cut(s) 99, 213, 473
Hpy188III TCNNGA 3 cut(s) 196, 230, 455
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 5 cut(s) 104, 118, 253, 321, 452
HpyCH4III ACNGT 3 cut(s) 113, 400, 565
HpyCH4V TGCA 3 cut(s) 59, 155, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 188
HpyF3I CTNAG 3 cut(s) 264, 315, 447
Hsp92II CATG 1 cut(s) 482
Kzo9I GATC 2 cut(s) 267, 513
LpnPI CCDG 6 cut(s) 153, 209, 353, 367, 380, 531
LweI GCATC 1 cut(s) 69
MaeI CTAG 3 cut(s) 47, 557, 577
MaeIII GTNAC 2 cut(s) 89, 559
MalI GATC 2 cut(s) 269, 515
MboI GATC 2 cut(s) 267, 513
MboII GAAGA 2 cut(s) 133, 303
MflI RGATCY 1 cut(s) 513
MluCI AATT 2 cut(s) 38, 543
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 3 cut(s) 21, 317, 355
MseI TTAA 2 cut(s) 239, 372
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 161, 188
NdeII GATC 2 cut(s) 267, 513
NlaIII CATG 1 cut(s) 482
NlaIV GGNNCC 1 cut(s) 515
PceI AGGCCT 2 cut(s) 45, 128
PfeI GAWTC 3 cut(s) 226, 233, 499
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 515
PsuI RGATCY 1 cut(s) 513
RsaI GTAC 2 cut(s) 221, 289
RsaNI GTAC 2 cut(s) 220, 288
SaqAI TTAA 2 cut(s) 239, 372
Sau3AI GATC 2 cut(s) 267, 513
ScrFI CCNGG 1 cut(s) 368
SetI ASST 9 cut(s) 8, 32, 69, 96, 119, 245, 308, 372, 469
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 399
Sse9I AATT 2 cut(s) 38, 543
SseBI AGGCCT 2 cut(s) 45, 128
SsiI CCGC 1 cut(s) 162
SspMI CTAG 3 cut(s) 47, 557, 577
StuI AGGCCT 2 cut(s) 45, 128
StyD4I CCNGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 113, 400, 565
TaqI TCGA 3 cut(s) 231, 322, 456
TasI AATT 2 cut(s) 38, 543
TatI WGTACW 1 cut(s) 287
TfiI GAWTC 3 cut(s) 226, 233, 499
Tru1I TTAA 2 cut(s) 239, 372
Tru9I TTAA 2 cut(s) 239, 372
TscAI CASTG 2 cut(s) 184, 386
TspRI CASTG 2 cut(s) 184, 386
XapI RAATTY 1 cut(s) 543
XspI CTAG 3 cut(s) 47, 557, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.