pycom13g26250

Autophagy-related protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0008019
Physical Location & Seq
Reverse (-)
22941717 .. 22944849
3133 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g26250.2

Sequence Viewer

Length: 1542 bp
ATGCAAAATTACAGTTTCCTGTTTTTAGAGAGGCAATGGTGCGTCAAGAGCGATCTATTTTGGGACTTAAAATTGGTTCGCGGGATTGGCCCTGCTTATAGAGCCTGCTTAGCAGAAATAGTCAGACGAAAGGCTTCCTTGAAGCTTTACATGGCGATGGCTGGACAGTTGGCTGAAAGACTTGTGACAAAAAGGGAGACTGAGGTCAGGAGACGGGAGGAGTTTTTGAAAGCTCACAGTTTATACATACCCAGGGATGTATTAGCATCCATGGGATTATATGATACCCTCAATCAGTGTGATGTCAACATAGCTCCTTTTGATACTAGCTTGCTTGATATTGAGATTTCAGACATTGACTGTTATGCTCCTGAGTACTTGACTCCACTGTCTTCCAAGAGTGCGTTTAGAGGTTCATATTCTATGTCTAACGAAACTTGTCATTCGGTTGGTGCTGACAAGAGTACATTGGATAACATTGAGAATTGTGACTCTGAGGAGCTACTTGAAGGCGGTGAGTTGGTAGAGATTGCTGGAACTGGTAAGTTGGAAGTTGAGAATGCAAAATTGAAAGCAGAACTGGCTTCTGCAATAGCTGTGATCTGTTCATTCTGGCCTGAAGTAGACTTTGAATCATTGGATGATAGTAAAGTGGATAATTTATTGAAGGGTGCCGCAGAGAAGACAGCTGAAGCCTTGCACCTGAAAGATGAATATGAAAAGCATCTCCAATCTATGCTTAGGGTGAAGCAGATGCGGTGTCTTTCATATGAGAAACGCATTCAAGAACTTGAACAGAGACTGTCTGATCAGTATTTGCAAAGCCAGAAGATTTCAAATGATAAGGATGCCTCTGAATTTGGAAATTTGTCTGACAAGGTTGATGACTGCAAGCAAGAAATCATAGGTGGTAGGGAAGTCCATATGCCTTGCTCATCTAATACTGAGCCCATGGATGAGGTTTCCTGCATCTCTAGTGTTTTTGATGCAAAATTGGGTCTGTTCAATGTGCAACCTGGAAAAATGAGAGATGGGGTAGATGAGAATATGATGGATTCTTCGGCAGTACGAAATCAGCTAATGGATTCATCCATGCAAAATCATCCACTGGATTCATCCATGCAAGAGCTAAAGCGTAAAGAACTGCTGGCCAGTGGTAAAGATGGGAAAGAAAAGATGGTGGGGCAGCTGGGCATGTCACTGACAAACAGTTCAACTGCTGAAAGCATGCCTGAACCTCTTAATGTTATACCGTGTGAAACAGCAATTGACCCAGGCTTGAACACCAAAGTCAGTGCAGAGCTGTTGTTGGAATTGCAAACCGCACTTTCAGAGAAGTCAAACCAGTTGACTGAAACAGAAATTAAGCTTAAAGCTGCTATGGAGGATGTTTCTATGCTTAAGAGGGAATTGGACACAAATCGGAAACTCCTTGATGAATCTCAGGTACTCCTGACTCAACCACTTTTTTTATGTTTTTTTTCCGAGAGACCATTTCTCAGAAATTTTGAGCTCATGCATCTGGCACACAACTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000272 GO:0000407 GO:0000422 GO:0001932 GO:0001934 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0005911 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009506 GO:0009893 GO:0009987 GO:0010150 GO:0010562 GO:0010604 GO:0015980 GO:0016020 GO:0016043 GO:0016052 GO:0016236 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022411 GO:0022607 GO:0030054 GO:0030242 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032947 GO:0032991 GO:0034045 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0055044 GO:0055114 GO:0060255 GO:0061695 GO:0061709 GO:0061723 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0090693 GO:0098805 GO:0099402 GO:1901575 GO:1902494 GO:1902554 GO:1902911 GO:1903008 GO:1905037 GO:1990234 GO:1990316
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04139 map04136 map04138 map04139
Pfam Domains
Protein Families
APG17 ATG11

Protein Analysis

514

Amino Acids

57.72

Weight (kDa)

4.87

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 388
AccB1I GGYRCC 1 cut(s) 671
AccI GTMKAC 1 cut(s) 624
AccII CGCG 1 cut(s) 81
AciI CCGC 5 cut(s) 81, 513, 675, 757, 1323
AcoI YGGCCR 1 cut(s) 1149
AcsI RAATTY 3 cut(s) 857, 865, 1504
AcuI CTGAAG 2 cut(s) 639, 711
AfaI GTAC 4 cut(s) 377, 466, 1068, 1449
AflII CTTAAG 1 cut(s) 1400
AjnI CCWGG 3 cut(s) 251, 1015, 1273
AleI CACNNNNGTG 1 cut(s) 1533
Alw21I GWGCWC 1 cut(s) 1515
Alw26I GTCTC 4 cut(s) 191, 205, 793, 1483
AlwNI CAGNNNCTG 1 cut(s) 802
AoxI GGCC 3 cut(s) 88, 614, 1149
ApeKI GCWGC 2 cut(s) 1186, 1376
ApoI RAATTY 3 cut(s) 857, 865, 1504
Asp700I GAANNNNTTC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 527, 757
BalI TGGCCA 1 cut(s) 1151
BanI GGYRCC 1 cut(s) 671
BanII GRGCYC 2 cut(s) 951, 1515
BbsI GAAGAC 2 cut(s) 384, 689
Bbv12I GWGCWC 1 cut(s) 1515
BbvI GCAGC 2 cut(s) 1198, 1363
BccI CCATC 5 cut(s) 151, 1025, 1045, 1157, 1171
BciT130I CCWGG 3 cut(s) 253, 1017, 1275
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 4 cut(s) 191, 205, 793, 1483
BfaI CTAG 2 cut(s) 327, 975
BfrI CTTAAG 1 cut(s) 1400
BisI GCNGC 3 cut(s) 675, 1187, 1377
BlpI GCTNAGC 1 cut(s) 109
BlsI GCNGC 3 cut(s) 676, 1188, 1378
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 3 cut(s) 253, 1017, 1275
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 673
BmrFI CCNGG 3 cut(s) 253, 1017, 1275
BmsI GCATC 7 cut(s) 275, 733, 744, 838, 976, 978, 1528
BoxI GACNNNNGTC 1 cut(s) 203
BpiI GAAGAC 2 cut(s) 384, 689
Bpu10I CCTNAGC 1 cut(s) 740
Bpu1102I GCTNAGC 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 1483
BsaJI CCNNGG 5 cut(s) 251, 252, 270, 951, 1273
Bse1I ACTGG 5 cut(s) 544, 585, 1113, 1152, 1345
Bse3DI GCAATG 1 cut(s) 41
BseBI CCWGG 3 cut(s) 253, 1017, 1275
BseDI CCNNGG 5 cut(s) 251, 252, 270, 951, 1273
BseGI GGATG 9 cut(s) 262, 266, 646, 853, 961, 1088, 1102, 1115, 1393
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 6 cut(s) 192, 363, 486, 936, 1457, 1513
BseNI ACTGG 5 cut(s) 544, 585, 1113, 1152, 1345
BseRI GAGGAG 2 cut(s) 233, 512
BseXI GCAGC 2 cut(s) 1198, 1363
BseYI CCCAGC 1 cut(s) 1189
BsgI GTGCAG 1 cut(s) 1317
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 90, 616, 1151
BshNI GGYRCC 1 cut(s) 671
BsiHKAI GWGCWC 1 cut(s) 1515
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 4 cut(s) 191, 205, 793, 1483
BsmBI CGTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 2 cut(s) 565, 780
BsnI GGCC 3 cut(s) 90, 616, 1151
Bso31I GGTCTC 1 cut(s) 1483
Bsp1286I GDGCHC 2 cut(s) 951, 1515
Bsp143I GATC 3 cut(s) 52, 600, 808
Bsp1720I GCTNAGC 1 cut(s) 109
Bsp19I CCATGG 2 cut(s) 270, 951
BspACI CCGC 5 cut(s) 81, 513, 675, 757, 1323
BspANI GGCC 3 cut(s) 90, 616, 1151
BspCNI CTCAG 6 cut(s) 193, 364, 487, 937, 1456, 1512
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 673
BspT107I GGYRCC 1 cut(s) 671
BspTI CTTAAG 1 cut(s) 1400
BspTNI GGTCTC 1 cut(s) 1483
BsrDI GCAATG 1 cut(s) 41
BsrI ACTGG 5 cut(s) 544, 585, 1113, 1152, 1345
BssECI CCNNGG 5 cut(s) 251, 252, 270, 951, 1273
BssMI GATC 3 cut(s) 52, 600, 808
BssT1I CCWWGG 2 cut(s) 270, 951
Bst2UI CCWGG 3 cut(s) 253, 1017, 1275
Bst4CI ACNGT 9 cut(s) 14, 168, 239, 362, 390, 804, 1211, 1254, 1535
BstAFI CTTAAG 1 cut(s) 1400
BstC8I GCNNGC 5 cut(s) 106, 332, 893, 1149, 1229
BstDEI CTNAG 8 cut(s) 109, 201, 372, 495, 740, 945, 1443, 1499
BstDSI CCRYGG 2 cut(s) 270, 951
BstF5I GGATG 9 cut(s) 262, 266, 646, 853, 961, 1088, 1102, 1115, 1393
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 3 cut(s) 55, 603, 811
BstMAI GTCTC 4 cut(s) 191, 205, 793, 1483
BstMBI GATC 3 cut(s) 52, 600, 808
BstMWI GCNNNNNNNGC 5 cut(s) 48, 87, 101, 110, 581
BstNI CCWGG 3 cut(s) 253, 1017, 1275
BstNSI RCATGY 2 cut(s) 1198, 1231
BstPAI GACNNNNGTC 1 cut(s) 203
BstSCI CCNGG 3 cut(s) 251, 1015, 1273
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 1198, 1363
BstV2I GAAGAC 2 cut(s) 384, 689
BsuRI GGCC 3 cut(s) 90, 616, 1151
BtgI CCRYGG 2 cut(s) 270, 951
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 9 cut(s) 262, 266, 646, 853, 961, 1088, 1102, 1115, 1393
BtsIMutI CAGTG 6 cut(s) 302, 386, 1106, 1159, 1199, 1300
Cac8I GCNNGC 5 cut(s) 106, 332, 893, 1149, 1229
CaiI CAGNNNCTG 1 cut(s) 802
Cfr13I GGNCC 1 cut(s) 89
CseI GACGC 1 cut(s) 31
Csp6I GTAC 4 cut(s) 376, 465, 1067, 1448
CviAII CATG 8 cut(s) 151, 271, 952, 1093, 1120, 1195, 1228, 1516
CviQI GTAC 4 cut(s) 376, 465, 1067, 1448
DdeI CTNAG 8 cut(s) 109, 201, 372, 495, 740, 945, 1443, 1499
DpnI GATC 3 cut(s) 54, 602, 810
DpnII GATC 3 cut(s) 52, 600, 808
DrdI GACNNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 1149
Ecl136II GAGCTC 1 cut(s) 1513
Eco130I CCWWGG 2 cut(s) 270, 951
Eco24I GRGCYC 2 cut(s) 951, 1515
Eco31I GGTCTC 1 cut(s) 1483
Eco53kI GAGCTC 1 cut(s) 1513
Eco57I CTGAAG 2 cut(s) 639, 711
EcoICRI GAGCTC 1 cut(s) 1513
EcoRII CCWGG 3 cut(s) 251, 1015, 1273
EcoT14I CCWWGG 2 cut(s) 270, 951
EcoT22I ATGCAT 1 cut(s) 1521
EcoT38I GRGCYC 2 cut(s) 951, 1515
ErhI CCWWGG 2 cut(s) 270, 951
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 8 cut(s) 154, 274, 955, 1096, 1123, 1198, 1231, 1519
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 77
FatI CATG 8 cut(s) 150, 270, 951, 1092, 1119, 1194, 1227, 1515
FauI CCCGC 1 cut(s) 74
FauNDI CATATG 2 cut(s) 769, 924
FbaI TGATCA 1 cut(s) 808
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 3 cut(s) 675, 1187, 1377
FokI GGATG 9 cut(s) 253, 269, 653, 860, 968, 1075, 1089, 1102, 1400
FriOI GRGCYC 2 cut(s) 951, 1515
Fsp4HI GCNGC 3 cut(s) 675, 1187, 1377
FspBI CTAG 2 cut(s) 327, 975
GluI GCNGC 3 cut(s) 675, 1187, 1377
GsaI CCCAGC 1 cut(s) 1193
HaeIII GGCC 3 cut(s) 90, 616, 1151
HgaI GACGC 1 cut(s) 31
Hin1II CATG 8 cut(s) 154, 274, 955, 1096, 1123, 1198, 1231, 1519
HincII GTYRAC 2 cut(s) 307, 1350
HindII GTYRAC 2 cut(s) 307, 1350
HindIII AAGCTT 2 cut(s) 143, 1367
HinfI GANTC 8 cut(s) 382, 491, 632, 1055, 1085, 1112, 1439, 1456
HphI GGTGA 2 cut(s) 527, 757
Hpy166II GTNNAC 3 cut(s) 307, 625, 1350
Hpy188III TCNNGA 5 cut(s) 46, 208, 371, 785, 1453
Hpy8I GTNNAC 3 cut(s) 307, 625, 1350
HpyAV CCTTC 2 cut(s) 503, 661
HpyCH4III ACNGT 9 cut(s) 14, 168, 239, 362, 390, 804, 1211, 1254, 1535
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 87, 101, 110, 581
HpyF3I CTNAG 8 cut(s) 109, 201, 372, 495, 740, 945, 1443, 1499
Hsp92II CATG 8 cut(s) 154, 274, 955, 1096, 1123, 1198, 1231, 1519
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 3 cut(s) 52, 600, 808
LmnI GCTCC 3 cut(s) 319, 373, 499
Lsp1109I GCAGC 2 cut(s) 1198, 1363
LweI GCATC 7 cut(s) 275, 733, 744, 838, 976, 978, 1528
MaeI CTAG 2 cut(s) 327, 975
MaeIII GTNAC 3 cut(s) 184, 488, 1197
MalI GATC 3 cut(s) 54, 602, 810
MboI GATC 3 cut(s) 52, 600, 808
MboII GAAGA 4 cut(s) 384, 694, 841, 1050
MfeI CAATTG 1 cut(s) 1266
MhlI GDGCHC 2 cut(s) 951, 1515
MlsI TGGCCA 1 cut(s) 1151
MluNI TGGCCA 1 cut(s) 1151
MlyI GAGTC 3 cut(s) 376, 485, 1450
MmeI TCCRAC 2 cut(s) 528, 1290
Mox20I TGGCCA 1 cut(s) 1151
Mph1103I ATGCAT 1 cut(s) 1521
MroXI GAANNNNTTC 1 cut(s) 133
MscI TGGCCA 1 cut(s) 1151
MseI TTAA 6 cut(s) 68, 1242, 1365, 1371, 1401, 1540
MslI CAYNNNNRTG 2 cut(s) 155, 1533
Msp20I TGGCCA 1 cut(s) 1151
MspA1I CMGCKG 2 cut(s) 689, 1189
MspCI CTTAAG 1 cut(s) 1400
MspR9I CCNGG 3 cut(s) 253, 1017, 1275
MunI CAATTG 1 cut(s) 1266
Mva1269I GAATGC 2 cut(s) 565, 780
MvaI CCWGG 3 cut(s) 253, 1017, 1275
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 5 cut(s) 48, 87, 101, 110, 581
NcoI CCATGG 2 cut(s) 270, 951
NdeI CATATG 2 cut(s) 769, 924
NdeII GATC 3 cut(s) 52, 600, 808
NlaIII CATG 8 cut(s) 154, 274, 955, 1096, 1123, 1198, 1231, 1519
NlaIV GGNNCC 1 cut(s) 673
NmuCI GTSAC 3 cut(s) 184, 488, 1197
NsiI ATGCAT 1 cut(s) 1521
NspI RCATGY 2 cut(s) 1198, 1231
OliI CACNNNNGTG 1 cut(s) 1533
PaeI GCATGC 1 cut(s) 1231
PasI CCCWGGG 1 cut(s) 252
PctI GAATGC 2 cut(s) 565, 780
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 5 cut(s) 632, 1055, 1085, 1112, 1439
PkrI GCNGC 3 cut(s) 676, 1188, 1378
PleI GAGTC 3 cut(s) 376, 485, 1450
PpsI GAGTC 3 cut(s) 376, 485, 1450
PshAI GACNNNNGTC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 1515
Psp6I CCWGG 3 cut(s) 251, 1015, 1273
PspFI CCCAGC 1 cut(s) 1189
PspGI CCWGG 3 cut(s) 251, 1015, 1273
PspN4I GGNNCC 1 cut(s) 673
PspPI GGNCC 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 802
PvuII CAGCTG 2 cut(s) 689, 1189
RsaI GTAC 4 cut(s) 377, 466, 1068, 1449
RsaNI GTAC 4 cut(s) 376, 465, 1067, 1448
RseI CAYNNNNRTG 2 cut(s) 155, 1533
SacI GAGCTC 1 cut(s) 1515
SaqAI TTAA 6 cut(s) 68, 1242, 1365, 1371, 1401, 1540
SatI GCNGC 3 cut(s) 675, 1187, 1377
Sau3AI GATC 3 cut(s) 52, 600, 808
Sau96I GGNCC 1 cut(s) 89
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 3 cut(s) 376, 485, 1450
ScrFI CCNGG 3 cut(s) 253, 1017, 1275
SduI GDGCHC 2 cut(s) 951, 1515
SfaNI GCATC 7 cut(s) 275, 733, 744, 838, 976, 978, 1528
SmiMI CAYNNNNRTG 2 cut(s) 155, 1533
SmlI CTYRAG 1 cut(s) 1400
SmoI CTYRAG 1 cut(s) 1400
SphI GCATGC 1 cut(s) 1231
SsiI CCGC 5 cut(s) 81, 513, 675, 757, 1323
SspMI CTAG 2 cut(s) 327, 975
SstI GAGCTC 1 cut(s) 1515
StyD4I CCNGG 3 cut(s) 251, 1015, 1273
StyI CCWWGG 2 cut(s) 270, 951
TaaI ACNGT 9 cut(s) 14, 168, 239, 362, 390, 804, 1211, 1254, 1535
TatI WGTACW 2 cut(s) 375, 464
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 5 cut(s) 632, 1055, 1085, 1112, 1439
Tru1I TTAA 6 cut(s) 68, 1242, 1365, 1371, 1401, 1540
Tru9I TTAA 6 cut(s) 68, 1242, 1365, 1371, 1401, 1540
TscAI CASTG 6 cut(s) 302, 393, 1113, 1159, 1206, 1300
TseFI GTSAC 3 cut(s) 184, 488, 1197
TseI GCWGC 2 cut(s) 1186, 1376
Tsp45I GTSAC 3 cut(s) 184, 488, 1197
TspDTI ATGAA 8 cut(s) 405, 597, 726, 732, 756, 1077, 1104, 1452
TspRI CASTG 6 cut(s) 302, 393, 1113, 1159, 1206, 1300
Vha464I CTTAAG 1 cut(s) 1400
XapI RAATTY 3 cut(s) 857, 865, 1504
XceI RCATGY 2 cut(s) 1198, 1231
XmiI GTMKAC 1 cut(s) 624
XmnI GAANNNNTTC 1 cut(s) 133
XspI CTAG 2 cut(s) 327, 975
ZrmI AGTACT 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 1521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.