AT4G31930

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013035
Physical Location & Seq
Reverse (-)
15449507 .. 15450919
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31930.1

Sequence Viewer

Length: 705 bp
ATGGCTCTTCTGCTCCGTACTCTTCAAAAATCACGCATTTCTCCTTCTCATTCCTCAAGAACCCTAATTTCTTGGGTTCGATGCAAATCTCTCTTGCCAAATCACCAATCACGAGACGTCACCACATCGCCAGCTAAATCACCCTTCCGGTCCAACATTCTTCGAATCATAAGAAACGAGATCGAGTATCAATCCGATTATGCTCCTCCGCATCAGCCAGCGACTGAATTCAAATCGTTCTCTGTGGAGGATTGTCCCGGTGAGCAATGCATTGTGATGAAAGGGAAGTTTGGAGAAGATGAGGATATCAAAATGGAAGCAACTATGTTTGATGGGTTTATGAATGTTCCAAGAGCCGGTTTAGATGCTTCAGGGCACGATGTCCGTCTTCATATTAGCTTGCTTGTTGACATTTCCAAGGTTGATGGAAGTGAAGAGATCGAGTTCCTTTGCTCCGTCTGGCCTAACCGTATTGAAATTCGAAAGCTTTACAAGCTTAGACGCAACAAAATCACTGGTCAGCCTTACATGGGACCTAATTTTGGGAATTTGAAGTATGATTTTCAGACAGCGATTCGGGAGTTTTTACGAGTAAGAGGAATCGACGCAGAGCTTTGTTTTTTCTTGCATGAATATATGATGAATAAGGATAGGATTGAGCTCATTCAATGGTTGAGAAAGCTAAATTCATTCATCTCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

234

Amino Acids

27.18

Weight (kDa)

8.78

Isoelectric Point (pI)

64.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 59 - 232 1.5e-19 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31930
fragaria_vesca FvH4_2g40840 FvH4_2g40840
malus_domestica MD15G1037100.v1.1
prunus_persica Prupe.1G391100_v2.0.a1 Prupe.1G391100_v2.0.a1
pyrus_communis pycom08g04940 pycom15g03430
rosa_chinensis RchiOBHm_Chr6g0299721
rosa_laevigata RLG00000011393
rosa_roxburghii Rroxscaffold_7G00168410
rosa_rugosa Rorug06G0291800 Rorug06G0291900
rosa_samantha Rh6AG402700 Rh6BG411300 Rh6CG417300 Rh6DG404200
rosa_wichuraiana Rw6G035250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AciI CCGC 1 cut(s) 209
AcsI RAATTY 4 cut(s) 227, 477, 547, 685
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 3 cut(s) 356, 530, 542
AgsI TTSAA 5 cut(s) 26, 232, 476, 553, 668
AluBI AGCT 7 cut(s) 134, 399, 487, 496, 613, 661, 682
AluI AGCT 7 cut(s) 134, 399, 487, 496, 613, 661, 682
Alw21I GWGCWC 1 cut(s) 663
Alw26I GTCTC 1 cut(s) 108
AlwNI CAGNNNCTG 1 cut(s) 224
AoxI GGCC 1 cut(s) 461
ApoI RAATTY 4 cut(s) 227, 477, 547, 685
AspS9I GGNCC 2 cut(s) 150, 533
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 4 cut(s) 95, 112, 132, 272
AsuII TTCGAA 2 cut(s) 163, 481
AvaII GGWCC 2 cut(s) 150, 533
BaeGI GKGCMC 1 cut(s) 378
BanII GRGCYC 1 cut(s) 663
BauI CACGAG 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 663
BccI CCATC 2 cut(s) 326, 419
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 2 cut(s) 150, 533
BmgT120I GGNCC 2 cut(s) 150, 533
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 3 cut(s) 71, 220, 355
BpiI GAAGAC 1 cut(s) 380
Bpu14I TTCGAA 2 cut(s) 163, 481
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 530, 542
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 272
Bse8I GATNNNNATC 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 417
BseJI GATNNNNATC 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 356, 530, 542
BseMI GCAATG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 378
BshFI GGCC 1 cut(s) 463
BsiHKAI GWGCWC 1 cut(s) 663
BsiSI CCGG 3 cut(s) 148, 258, 357
BslFI GGGAC 2 cut(s) 240, 546
BslI CCNNNNNNNGG 3 cut(s) 356, 530, 542
BsmAI GTCTC 1 cut(s) 108
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 2 cut(s) 240, 546
BsnI GGCC 1 cut(s) 463
Bsp119I TTCGAA 2 cut(s) 163, 481
Bsp1286I GDGCHC 2 cut(s) 378, 663
Bsp143I GATC 2 cut(s) 180, 438
BspACI CCGC 1 cut(s) 209
BspANI GGCC 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 534
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 2 cut(s) 163, 481
BsrDI GCAATG 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 2 cut(s) 180, 438
BssNI GRCGYC 1 cut(s) 117
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 3 cut(s) 12, 27, 429
BstACI GRCGYC 1 cut(s) 117
BstBI TTCGAA 2 cut(s) 163, 481
BstC8I GCNNGC 3 cut(s) 132, 219, 401
BstDEI CTNAG 1 cut(s) 497
BstKTI GATC 2 cut(s) 183, 441
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 2 cut(s) 180, 438
BstMWI GCNNNNNNNGC 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 378
BstV2I GAAGAC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 463
BtgZI GCGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 3 cut(s) 132, 219, 401
CaiI CAGNNNCTG 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 150, 533
CseI GACGC 2 cut(s) 510, 614
Csp6I GTAC 1 cut(s) 18
CviAII CATG 2 cut(s) 529, 629
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 1 cut(s) 497
DpnI GATC 2 cut(s) 182, 440
DpnII GATC 2 cut(s) 180, 438
Eam1104I CTCTTC 3 cut(s) 12, 27, 429
EarI CTCTTC 3 cut(s) 12, 27, 429
Ecl136II GAGCTC 1 cut(s) 661
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 663
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 150, 533
Eco53kI GAGCTC 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 533
EcoRI GAATTC 1 cut(s) 227
EcoRV GATATC 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 2 cut(s) 532, 632
FaqI GGGAC 2 cut(s) 240, 546
FatI CATG 2 cut(s) 528, 628
FriOI GRGCYC 1 cut(s) 663
HaeIII GGCC 1 cut(s) 463
HapII CCGG 3 cut(s) 148, 258, 357
HgaI GACGC 2 cut(s) 510, 614
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 2 cut(s) 532, 632
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 2 cut(s) 485, 494
HinfI GANTC 3 cut(s) 165, 574, 600
HpaII CCGG 3 cut(s) 148, 258, 357
HphI GGTGA 4 cut(s) 95, 112, 132, 272
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 2 cut(s) 196, 567
Hpy188III TCNNGA 3 cut(s) 57, 111, 578
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 1 cut(s) 608
HpyAV CCTTC 2 cut(s) 54, 154
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 84, 270, 628
HpyF10VI GCNNNNNNNGC 1 cut(s) 493
HpyF3I CTNAG 1 cut(s) 497
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 2 cut(s) 532, 632
Kzo9I GATC 2 cut(s) 180, 438
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 3 cut(s) 18, 208, 458
LpnPI CCDG 8 cut(s) 144, 161, 231, 271, 357, 370, 445, 501
LweI GCATC 3 cut(s) 71, 220, 355
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 182, 440
MboI GATC 2 cut(s) 180, 438
MboII GAAGA 5 cut(s) 14, 152, 308, 380, 446
MhlI GDGCHC 2 cut(s) 378, 663
MluCI AATT 6 cut(s) 66, 227, 477, 538, 547, 685
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 5 cut(s) 64, 216, 241, 295, 590
Mph1103I ATGCAT 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 3 cut(s) 148, 258, 357
MspR9I CCNGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 493
NciI CCSGG 1 cut(s) 258
NdeII GATC 2 cut(s) 180, 438
NlaIII CATG 2 cut(s) 532, 632
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 272
NspV TTCGAA 2 cut(s) 163, 481
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 3 cut(s) 165, 574, 600
PpuMI RGGWCCY 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 533
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 2 cut(s) 150, 533
PspPPI RGGWCCY 1 cut(s) 533
PstNI CAGNNNCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 663
SapI GCTCTTC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 180, 438
Sau96I GGNCC 2 cut(s) 150, 533
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 2 cut(s) 378, 663
SfaNI GCATC 3 cut(s) 71, 220, 355
SfuI TTCGAA 2 cut(s) 163, 481
SinI GGWCC 2 cut(s) 150, 533
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 6 cut(s) 66, 227, 477, 538, 547, 685
SsiI CCGC 1 cut(s) 209
SstI GAGCTC 1 cut(s) 663
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 120
TaqI TCGA 6 cut(s) 79, 163, 183, 441, 481, 603
TasI AATT 6 cut(s) 66, 227, 477, 538, 547, 685
TfiI GAWTC 3 cut(s) 165, 574, 600
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 7 cut(s) 293, 356, 380, 645, 656, 678, 682
TspGWI ACGGA 3 cut(s) 5, 374, 445
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 2 cut(s) 150, 533
XapI RAATTY 4 cut(s) 227, 477, 547, 685
ZraI GACGTC 1 cut(s) 118
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.