Rroxscaffold_7G00168410

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013035
Physical Location & Seq
Forward (+)
9287227 .. 9288694
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168410.1

Sequence Viewer

Length: 609 bp
ATGGCTCGTTTAATCCGAATTGCCCAAACTACGCTTCGGAATTGTTCTTCTTGTTCACCCAAAACCCTAATTAATGGCCACCCAAATCCTCCTCTGCTGCAAATGCACAACAGACCTTACGCTTCTGAGGCACTCTCCACATCACCCTTGACTTCCAACATCCTTAGAATCCTGCGCACTGAAATCGAGTACCAGTCAGAGTCTGCTCCTCCTCATCAGCCTCCTGCAAAGTTCAATTCTTTTGAGGTGGAAGATCGGCCCGGGGAGCAGTGGATTACAATGAGAGGCAAATTTGGAGATACTGAAGAGATTAAGCTTGAGGTTACTATGTTTGATGGGTATGAATCTGTTCCCAAGACTGGAGATGACAGCTCTGGGGAAGATTTGCGTCTTCACATTAGTGTGCTTGTTGATATTTCCAAGGGTGACGACGCCTCCAATGATCTCGAGTTCCTGTGCTCGGCCTGGCCGGACCGTTTGGAGGTTCAGAAAGTTTATGTTCTTCACCGTGGTAGAATGCCGGCTAAGCCTTATTTGGGACCCGATTTCAGGGATGTGAATGAGGAGATTCAAAAGAAGCTTCGTGGTTATTTAGATGCAAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

202

Amino Acids

22.93

Weight (kDa)

5.46

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 59 - 201 6.3e-12 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31930
fragaria_vesca FvH4_2g40840 FvH4_2g40840
malus_domestica MD15G1037100.v1.1
prunus_persica Prupe.1G391100_v2.0.a1 Prupe.1G391100_v2.0.a1
pyrus_communis pycom08g04940 pycom15g03430
rosa_chinensis RchiOBHm_Chr6g0299721
rosa_laevigata RLG00000011393
rosa_roxburghii Rroxscaffold_7G00168410
rosa_rugosa Rorug06G0291800 Rorug06G0291900
rosa_samantha Rh6AG402700 Rh6BG411300 Rh6CG417300 Rh6DG404200
rosa_wichuraiana Rw6G035250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 176
AcoI YGGCCR 2 cut(s) 76, 467
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 5 cut(s) 359, 460, 481, 536, 549
AgsI TTSAA 2 cut(s) 235, 572
AjnI CCWGG 1 cut(s) 464
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 3 cut(s) 316, 372, 580
AluI AGCT 3 cut(s) 316, 372, 580
Alw21I GWGCWC 1 cut(s) 461
AlwNI CAGNNNCTG 1 cut(s) 203
Ama87I CYCGRG 2 cut(s) 260, 446
AoxI GGCC 4 cut(s) 76, 257, 462, 467
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 290
AseI ATTAAT 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 258, 472, 539
AsuC2I CCSGG 2 cut(s) 261, 262
AsuHPI GGTGA 4 cut(s) 48, 135, 437, 497
AvaI CYCGRG 2 cut(s) 260, 446
AvaII GGWCC 2 cut(s) 472, 539
BalI TGGCCA 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 329
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 466
BcnI CCSGG 2 cut(s) 261, 262
BisI GCNGC 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 3 cut(s) 261, 262, 466
Bme18I GGWCC 2 cut(s) 472, 539
BmeT110I CYCGRG 2 cut(s) 260, 446
BmgT120I GGNCC 3 cut(s) 258, 472, 539
BmiI GGNNCC 2 cut(s) 540, 541
BmrFI CCNGG 3 cut(s) 261, 262, 466
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 383
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 1 cut(s) 381
Bpu1102I GCTNAGC 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 2 cut(s) 261, 262
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 4 cut(s) 260, 261, 420, 508
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 5 cut(s) 359, 460, 481, 536, 549
Bse118I RCCGGY 1 cut(s) 520
Bse1I ACTGG 2 cut(s) 193, 364
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 4 cut(s) 260, 261, 420, 508
BseGI GGATG 2 cut(s) 159, 559
BseLI CCNNNNNNNGG 5 cut(s) 359, 460, 481, 536, 549
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 193, 364
BseRI GAGGAG 4 cut(s) 81, 198, 201, 578
BseXI GCAGC 1 cut(s) 84
BshFI GGCC 4 cut(s) 78, 259, 464, 469
BsiHKAI GWGCWC 1 cut(s) 461
BsiHKCI CYCGRG 2 cut(s) 260, 446
BsiSI CCGG 3 cut(s) 261, 470, 521
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 5 cut(s) 359, 460, 481, 536, 549
BsmFI GGGAC 1 cut(s) 552
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 4 cut(s) 78, 259, 464, 469
BsoBI CYCGRG 2 cut(s) 260, 446
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 2 cut(s) 253, 442
Bsp1720I GCTNAGC 1 cut(s) 525
BspANI GGCC 4 cut(s) 78, 259, 464, 469
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 540, 541
BsrFI RCCGGY 1 cut(s) 520
BsrI ACTGG 2 cut(s) 193, 364
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 4 cut(s) 260, 261, 420, 508
BssMI GATC 2 cut(s) 253, 442
BssNI GRCGYC 1 cut(s) 432
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 2 cut(s) 476, 509
Bst6I CTCTTC 1 cut(s) 300
BstACI GRCGYC 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 3 cut(s) 126, 164, 525
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 159, 559
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 256, 445
BstMBI GATC 2 cut(s) 253, 442
BstMWI GCNNNNNNNGC 4 cut(s) 103, 128, 265, 526
BstNI CCWGG 1 cut(s) 466
BstSCI CCNGG 3 cut(s) 259, 260, 464
BstV1I GCAGC 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 383
BsuRI GGCC 4 cut(s) 78, 259, 464, 469
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 2 cut(s) 159, 559
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 2 cut(s) 177, 275
Cac8I GCNNGC 1 cut(s) 522
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 3 cut(s) 258, 472, 539
Cfr9I CCCGGG 1 cut(s) 260
CpoI CGGWCCG 1 cut(s) 472
CseI GACGC 2 cut(s) 377, 440
Csp6I GTAC 1 cut(s) 190
CspI CGGWCCG 1 cut(s) 472
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 126, 164, 525
DpnI GATC 2 cut(s) 255, 444
DpnII GATC 2 cut(s) 253, 442
EaeI YGGCCR 2 cut(s) 76, 467
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 472, 539
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 2 cut(s) 260, 446
EcoO109I RGGNCCY 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaiI YATR 3 cut(s) 329, 342, 498
FaqI GGGAC 1 cut(s) 552
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 2 cut(s) 146, 566
Fsp4HI GCNGC 1 cut(s) 98
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 4 cut(s) 78, 259, 464, 469
HapII CCGG 3 cut(s) 261, 470, 521
HgaI GACGC 2 cut(s) 377, 440
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 432
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 2 cut(s) 314, 578
HinfI GANTC 4 cut(s) 168, 200, 344, 568
HpaII CCGG 3 cut(s) 261, 470, 521
HphI GGTGA 4 cut(s) 48, 135, 437, 497
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 5 cut(s) 17, 39, 127, 199, 489
Hpy188III TCNNGA 1 cut(s) 446
Hpy8I GTNNAC 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 434
HpyCH4III ACNGT 2 cut(s) 476, 509
HpyCH4V TGCA 4 cut(s) 100, 106, 227, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 128, 265, 526
HpyF3I CTNAG 3 cut(s) 126, 164, 525
Hsp92I GRCGYC 1 cut(s) 432
HspAI GCGC 1 cut(s) 175
KflI GGGWCCC 1 cut(s) 539
KroI GCCGGC 1 cut(s) 520
KroNI GCCGGC 1 cut(s) 522
Kzo9I GATC 2 cut(s) 253, 442
LmnI GCTCC 2 cut(s) 211, 265
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 1 cut(s) 586
MaeIII GTNAC 2 cut(s) 322, 425
MalI GATC 2 cut(s) 255, 444
MboI GATC 2 cut(s) 253, 442
MboII GAAGA 6 cut(s) 39, 263, 317, 383, 392, 494
MhlI GDGCHC 1 cut(s) 461
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 5 cut(s) 18, 40, 69, 235, 290
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 180
Mox20I TGGCCA 1 cut(s) 78
MroNI GCCGGC 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 78
MseI TTAA 3 cut(s) 11, 72, 312
MslI CAYNNNNRTG 2 cut(s) 399, 401
Msp20I TGGCCA 1 cut(s) 78
MspI CCGG 3 cut(s) 261, 470, 521
MspR9I CCNGG 3 cut(s) 261, 262, 466
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 1 cut(s) 466
MwoI GCNNNNNNNGC 4 cut(s) 103, 128, 265, 526
NaeI GCCGGC 1 cut(s) 522
NciI CCSGG 2 cut(s) 261, 262
NdeII GATC 2 cut(s) 253, 442
NgoMIV GCCGGC 1 cut(s) 520
NlaIV GGNNCC 2 cut(s) 540, 541
NmeAIII GCCGAG 1 cut(s) 440
NmuCI GTSAC 1 cut(s) 425
NsbI TGCGCA 1 cut(s) 176
OliI CACNNNNGTG 1 cut(s) 399
PaeR7I CTCGAG 1 cut(s) 446
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PctI GAATGC 1 cut(s) 522
PdiI GCCGGC 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 3 cut(s) 168, 344, 568
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 539
PshBI ATTAAT 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 2 cut(s) 540, 541
PspPI GGNCC 3 cut(s) 258, 472, 539
PspPPI RGGWCCY 1 cut(s) 539
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 399, 401
Rsr2I CGGWCCG 1 cut(s) 472
RsrII CGGWCCG 1 cut(s) 472
SaqAI TTAA 3 cut(s) 11, 72, 312
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 253, 442
Sau96I GGNCC 3 cut(s) 258, 472, 539
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 3 cut(s) 261, 262, 466
SduI GDGCHC 1 cut(s) 461
SetI ASST 7 cut(s) 118, 249, 318, 324, 374, 486, 582
SfaNI GCATC 1 cut(s) 586
Sfr274I CTCGAG 1 cut(s) 446
SinI GGWCC 2 cut(s) 472, 539
SlaI CTCGAG 1 cut(s) 446
SmaI CCCGGG 1 cut(s) 262
SmiMI CAYNNNNRTG 2 cut(s) 399, 401
SmlI CTYRAG 2 cut(s) 317, 446
SmoI CTYRAG 2 cut(s) 317, 446
Sse9I AATT 5 cut(s) 18, 40, 69, 235, 290
StyD4I CCNGG 3 cut(s) 259, 260, 464
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 476, 509
TaqI TCGA 2 cut(s) 186, 447
TasI AATT 5 cut(s) 18, 40, 69, 235, 290
TfiI GAWTC 3 cut(s) 168, 344, 568
Tru1I TTAA 3 cut(s) 11, 72, 312
Tru9I TTAA 3 cut(s) 11, 72, 312
TscAI CASTG 2 cut(s) 184, 275
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 1 cut(s) 357
TspMI CCCGGG 1 cut(s) 260
TspRI CASTG 2 cut(s) 184, 275
VpaK11BI GGWCC 2 cut(s) 472, 539
VspI ATTAAT 1 cut(s) 72
XapI RAATTY 1 cut(s) 290
XhoI CTCGAG 1 cut(s) 446
XmaI CCCGGG 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.