Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013035

Physical Location & Seq

Genomic Coordinates Forward (+)

34861724 .. 34863896

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G391100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTCGATTAATTCGAACTGCTCGAAGTGCGCTGCGATTGTCTTCTTCTTGTTCATGCAAAACCCTAATCAATGGCATTCAACGCCACCCAAATCCTTCGCTGCAAGTGCAGAAAGCGATCTCAACCTCTCTCTTCCAAAACAGACCTTACGCTTCTGAAACGCTTCCCAAGTCGCCCATGGAAGCTAACATCCTTAGAATCCTCAGAAACGAGGAGGAGTACCAGTCCGAGTATGCTCCTCCTGAACAGCCTCCTACAAAATTCAATTCGTTTACGGTGCAAGATCGGCCAGGTGAGCTGTGGATGACAATGAGAGGAAAATTTGGAGACACTGAGGATATTAAAATTGAAGTTACTATGTTTGATGGGTATGAAACGGTTCCCAAGACTGGAGATGACAGTTCTGGGGAAGACGTGCGTCTTCACCTCAGTATGATTGTTGATATTTCCCGGGGGGATGGCTCCAATGATTTGGAGTTTCTGTGCTCTGCCTGGCCGGACCGTCTAGAGGTTCAGAAAGTTTATGTTCTCGATCGTTATAGAATGCCCGCTAAGCCATATATGGGACCTGATTTCAGGAGTTTGAAGAGAACGATTCAAAAGAGGTTTATTGAGTATTTGGAAGCAAGGGGAGTGGATGATGAGCTTTCTGTTTTCCTGCATCAATATATGGCGAACAAGGACAGAATAGAACTTATCAAATGGTTGGGAAAGGTCAAGTCGTTTCTGGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

247

Amino Acids

28.42

Weight (kDa)

7.67

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31930
fragaria_vesca	FvH4_2g40840 FvH4_2g40840
malus_domestica	MD15G1037100.v1.1
prunus_persica	Prupe.1G391100_v2.0.a1 Prupe.1G391100_v2.0.a1
pyrus_communis	pycom08g04940 pycom15g03430
rosa_chinensis	RchiOBHm_Chr6g0299721
rosa_laevigata	RLG00000011393
rosa_roxburghii	Rroxscaffold_7G00168410
rosa_rugosa	Rorug06G0291800 Rorug06G0291900
rosa_samantha	Rh6AG402700 Rh6BG411300 Rh6CG417300 Rh6DG404200
rosa_wichuraiana	Rw6G035250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	552
AcoI	YGGCCR	2 cut(s)	290, 497
AcsI	RAATTY	2 cut(s)	263, 323
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	3 cut(s)	392, 511, 566
AgsI	TTSAA	5 cut(s)	83, 268, 353, 589, 602
AjiI	CACGTC	1 cut(s)	418
AjnI	CCWGG	2 cut(s)	292, 494
AluBI	AGCT	3 cut(s)	188, 301, 649
AluI	AGCT	3 cut(s)	188, 301, 649
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	1 cut(s)	324
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	2 cut(s)	290, 497
ApeKI	GCWGC	2 cut(s)	34, 103
ApoI	RAATTY	2 cut(s)	263, 323
AseI	ATTAAT	1 cut(s)	11
Asp700I	GAANNNNTTC	2 cut(s)	165, 381
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	502, 569
AsuC2I	CCSGG	2 cut(s)	454, 455
AsuHPI	GGTGA	2 cut(s)	308, 419
AsuII	TTCGAA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	453
AvaII	GGWCC	2 cut(s)	502, 569
BbsI	GAAGAC	3 cut(s)	36, 416, 420
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	21, 90
BccI	CCATC	2 cut(s)	362, 455
BciT130I	CCWGG	2 cut(s)	294, 496
BcnI	CCSGG	2 cut(s)	454, 455
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	1 cut(s)	509
BisI	GCNGC	2 cut(s)	35, 104
BlpI	GCTNAGC	1 cut(s)	555
BlsI	GCNGC	2 cut(s)	36, 105
Bme1390I	CCNGG	4 cut(s)	294, 454, 455, 496
Bme18I	GGWCC	2 cut(s)	502, 569
BmeT110I	CYCGRG	1 cut(s)	453
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	502, 569
BmiI	GGNNCC	3 cut(s)	384, 466, 570
BmrFI	CCNGG	4 cut(s)	294, 454, 455, 496
BmsI	GCATC	1 cut(s)	673
BoxI	GACNNNNGTC	1 cut(s)	420
BpiI	GAAGAC	3 cut(s)	36, 416, 420
BpmI	CTGGAG	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	555
Bpu14I	TTCGAA	1 cut(s)	16
BpuMI	CCSGG	2 cut(s)	454, 455
BsaJI	CCNNGG	3 cut(s)	180, 453, 454
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 470, 500
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 511, 566
Bse1I	ACTGG	2 cut(s)	226, 397
BseBI	CCWGG	2 cut(s)	294, 496
BseDI	CCNNGG	3 cut(s)	180, 453, 454
BseGI	GGATG	4 cut(s)	192, 312, 466, 646
BseLI	CCNNNNNNNGG	3 cut(s)	392, 511, 566
BseMII	CTCAG	3 cut(s)	220, 327, 445
BseNI	ACTGG	2 cut(s)	226, 397
BseRI	GAGGAG	3 cut(s)	230, 231, 233
BseXI	GCAGC	2 cut(s)	21, 90
BsgI	GTGCAG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	538
BshFI	GGCC	2 cut(s)	292, 499
BsiEI	CGRYCG	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	454, 500
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	3 cut(s)	392, 511, 566
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	582
BsmI	GAATGC	2 cut(s)	78, 552
BsnI	GGCC	2 cut(s)	292, 499
BsoBI	CYCGRG	1 cut(s)	453
Bsp119I	TTCGAA	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	120, 286, 535
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	1 cut(s)	552
BspANI	GGCC	2 cut(s)	292, 499
BspCNI	CTCAG	3 cut(s)	219, 328, 444
BspLI	GGNNCC	3 cut(s)	384, 466, 570
BspT104I	TTCGAA	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	226, 397
BssECI	CCNNGG	3 cut(s)	180, 453, 454
BssMI	GATC	3 cut(s)	120, 286, 535
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	294, 496
Bst4CI	ACNGT	4 cut(s)	280, 382, 404, 506
Bst6I	CTCTTC	2 cut(s)	140, 584
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	5 cut(s)	197, 206, 336, 431, 555
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	4 cut(s)	192, 312, 466, 646
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	3 cut(s)	123, 289, 538
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	3 cut(s)	120, 286, 535
BstMCI	CGRYCG	1 cut(s)	538
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 84, 109, 289, 298, 556
BstNI	CCWGG	2 cut(s)	294, 496
BstPAI	GACNNNNGTC	1 cut(s)	420
BstSCI	CCNGG	4 cut(s)	292, 452, 453, 494
BstV1I	GCAGC	2 cut(s)	21, 90
BstV2I	GAAGAC	3 cut(s)	36, 416, 420
BstXI	CCANNNNNNTGG	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	292, 499
BtgI	CCRYGG	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	418
BtsCI	GGATG	4 cut(s)	192, 312, 466, 646
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	502, 569
Cfr9I	CCCGGG	1 cut(s)	453
CpoI	CGGWCCG	1 cut(s)	502
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CspI	CGGWCCG	1 cut(s)	502
CviAII	CATG	2 cut(s)	57, 181
CviJI	RGCY	9 cut(s)	5, 188, 253, 292, 301, 465, 499, 559, 649
CviKI_1	RGCY	9 cut(s)	5, 188, 253, 292, 301, 465, 499, 559, 649
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	5 cut(s)	197, 206, 336, 431, 555
DpnI	GATC	3 cut(s)	122, 288, 537
DpnII	GATC	3 cut(s)	120, 286, 535
EaeI	YGGCCR	2 cut(s)	290, 497
Eam1104I	CTCTTC	2 cut(s)	140, 584
EarI	CTCTTC	2 cut(s)	140, 584
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	502, 569
Eco88I	CYCGRG	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	292, 494
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	60, 184
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	2 cut(s)	56, 180
FauI	CCCGC	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	35, 104
FokI	GGATG	4 cut(s)	179, 319, 473, 653
Fsp4HI	GCNGC	2 cut(s)	35, 104
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	35, 104
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	292, 499
HapII	CCGG	2 cut(s)	454, 500
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	60, 184
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	201, 598
HpaII	CCGG	2 cut(s)	454, 500
HphI	GGTGA	2 cut(s)	308, 419
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	4 cut(s)	160, 209, 232, 519
Hpy188III	TCNNGA	5 cut(s)	245, 509, 533, 580, 731
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	108
HpyCH4III	ACNGT	4 cut(s)	280, 382, 404, 506
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	5 cut(s)	60, 106, 112, 283, 664
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 84, 109, 289, 298, 556
HpyF3I	CTNAG	5 cut(s)	197, 206, 336, 431, 555
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	60, 184
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	120, 286, 535
LmnI	GCTCC	2 cut(s)	244, 470
Lsp1109I	GCAGC	2 cut(s)	21, 90
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	122, 288, 537
MboI	GATC	3 cut(s)	120, 286, 535
MboII	GAAGA	6 cut(s)	36, 39, 127, 416, 425, 601
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	5 cut(s)	12, 263, 268, 323, 348
MroXI	GAANNNNTTC	2 cut(s)	165, 381
MseI	TTAA	2 cut(s)	11, 345
MspI	CCGG	2 cut(s)	454, 500
MspR9I	CCNGG	4 cut(s)	294, 454, 455, 496
Mva1269I	GAATGC	2 cut(s)	78, 552
MvaI	CCWGG	2 cut(s)	294, 496
MwoI	GCNNNNNNNGC	6 cut(s)	29, 84, 109, 289, 298, 556
NciI	CCSGG	2 cut(s)	454, 455
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	120, 286, 535
NlaIII	CATG	2 cut(s)	60, 184
NlaIV	GGNNCC	3 cut(s)	384, 466, 570
NspV	TTCGAA	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	2 cut(s)	13, 22
PctI	GAATGC	2 cut(s)	78, 552
PdmI	GAANNNNTTC	2 cut(s)	165, 381
PfeI	GAWTC	2 cut(s)	201, 598
PkrI	GCNGC	2 cut(s)	36, 105
Ple19I	CGATCG	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	569
PshAI	GACNNNNGTC	1 cut(s)	420
PshBI	ATTAAT	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	2 cut(s)	292, 494
PspGI	CCWGG	2 cut(s)	292, 494
PspN4I	GGNNCC	3 cut(s)	384, 466, 570
PspPI	GGNCC	2 cut(s)	502, 569
PspPPI	RGGWCCY	1 cut(s)	569
PvuI	CGATCG	1 cut(s)	538
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
Rsr2I	CGGWCCG	1 cut(s)	502
RsrII	CGGWCCG	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	11, 345
SatI	GCNGC	2 cut(s)	35, 104
Sau3AI	GATC	3 cut(s)	120, 286, 535
Sau96I	GGNCC	2 cut(s)	502, 569
ScrFI	CCNGG	4 cut(s)	294, 454, 455, 496
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	1 cut(s)	673
SfuI	TTCGAA	1 cut(s)	16
SinI	GGWCC	2 cut(s)	502, 569
SmaI	CCCGGG	1 cut(s)	455
Sse9I	AATT	5 cut(s)	12, 263, 268, 323, 348
SsiI	CCGC	1 cut(s)	552
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	4 cut(s)	292, 452, 453, 494
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	4 cut(s)	280, 382, 404, 506
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	4 cut(s)	7, 16, 25, 534
TasI	AATT	5 cut(s)	12, 263, 268, 323, 348
TfiI	GAWTC	2 cut(s)	201, 598
Tru1I	TTAA	2 cut(s)	11, 345
Tru9I	TTAA	2 cut(s)	11, 345
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	2 cut(s)	34, 103
TspDTI	ATGAA	2 cut(s)	45, 390
TspMI	CCCGGG	1 cut(s)	453
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	2 cut(s)	502, 569
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	2 cut(s)	263, 323
XbaI	TCTAGA	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	2 cut(s)	178, 300
XmaI	CCCGGG	1 cut(s)	453
XmnI	GAANNNNTTC	2 cut(s)	165, 381
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.