pycom08g04940

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013035
Physical Location & Seq
Reverse (-)
3772450 .. 3773948
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g04940.2

Sequence Viewer

Length: 642 bp
ATGGCTCGACTGATTCGAACTGCGCTAGGTGTGCTTCCAATTTTTTCTTCTCCCGCATCCAAATCCATATTCAAAGGCGTTCAGCGCCACCCAAATCTTCCGCCGCGTAAGGCAATCTCAGCCCTTCTCTTGCACAGCAGACTCTATGCTTCTGAAGCACTTCCCCAGTCGCCCATGGAAGCTAACATTCTTAGAATTCTCAGGAACGAGGTGGAGTACCAGTCCGAGTATGCTCTTCCTCAGCAGCCTGCTATGAAATTCGAATCGTTTACAGTGCAGGATCGGCCGGGAGAGCAGTGGATTACAATGAGAAGGAAATTAGGAGAGACTGAAGATATTAAAATTGAAGTCACTATGTTTGATGGGTATGAAACTGTTCGTAAAACTGGAGATGATAGCTCCGGGGAAGACGTGCGTCTTCACCTTAGTATGCTTGTTGATATTATAAAGGGGGGTGGTGGTTCCAAGGATTTGGAGTTTCTGTGCTCGGCCTGGCCGGATCGTTGGAGGTTCAGAAAGTTTATGTTCTTGAGCGTGATCGAATGCTGGCTAAGCCTTATATGGGACCTGATTTCAGGGGGCAGGAGTTTGAATGGAAGGCTTCAACAGAGGCTGAGAGAGTATTTAGAAGCCAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

214

Amino Acids

24.49

Weight (kDa)

8.9

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31930
fragaria_vesca FvH4_2g40840 FvH4_2g40840
malus_domestica MD15G1037100.v1.1
prunus_persica Prupe.1G391100_v2.0.a1 Prupe.1G391100_v2.0.a1
pyrus_communis pycom08g04940 pycom15g03430
rosa_chinensis RchiOBHm_Chr6g0299721
rosa_laevigata RLG00000011393
rosa_roxburghii Rroxscaffold_7G00168410
rosa_rugosa Rorug06G0291800 Rorug06G0291900
rosa_samantha Rh6AG402700 Rh6BG411300 Rh6CG417300 Rh6DG404200
rosa_wichuraiana Rw6G035250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AccII CGCG 1 cut(s) 106
AciI CCGC 3 cut(s) 54, 101, 104
AclWI GGATC 2 cut(s) 288, 507
AcoI YGGCCR 2 cut(s) 284, 494
AcsI RAATTY 2 cut(s) 195, 257
AcuI CTGAAG 2 cut(s) 174, 351
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 562
AgsI TTSAA 4 cut(s) 73, 347, 592, 605
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 2 cut(s) 491, 632
AjuI GAANNNNNNNTTGG 4 cut(s) 31, 53, 63, 85
AluBI AGCT 2 cut(s) 182, 399
AluI AGCT 2 cut(s) 182, 399
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 2 cut(s) 288, 507
AlwNI CAGNNNCTG 1 cut(s) 613
AoxI GGCC 3 cut(s) 284, 489, 494
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 2 cut(s) 195, 257
Asp700I GAANNNNTTC 2 cut(s) 159, 375
AspLEI GCGC 2 cut(s) 25, 87
AspS9I GGNCC 1 cut(s) 565
AsuC2I CCSGG 2 cut(s) 288, 403
AsuHPI GGTGA 1 cut(s) 413
AsuII TTCGAA 2 cut(s) 16, 261
AvaII GGWCC 1 cut(s) 565
BbsI GAAGAC 2 cut(s) 410, 414
Bbv12I GWGCWC 1 cut(s) 488
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 2 cut(s) 493, 634
BcnI CCSGG 2 cut(s) 288, 403
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 88
BisI GCNGC 2 cut(s) 104, 245
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 2 cut(s) 105, 246
Bme1390I CCNGG 4 cut(s) 288, 403, 493, 634
Bme18I GGWCC 1 cut(s) 565
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 565
BmiI GGNNCC 2 cut(s) 463, 566
BmrFI CCNGG 4 cut(s) 288, 403, 493, 634
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 160
BoxI GACNNNNGTC 1 cut(s) 414
BpiI GAAGAC 2 cut(s) 410, 414
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 240
Bpu1102I GCTNAGC 1 cut(s) 551
Bpu14I TTCGAA 2 cut(s) 16, 261
BpuEI CTTGAG 1 cut(s) 550
BpuMI CCSGG 2 cut(s) 288, 403
BsaJI CCNNGG 4 cut(s) 174, 402, 465, 633
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 467, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse1I ACTGG 3 cut(s) 166, 220, 391
BseBI CCWGG 2 cut(s) 493, 634
BseDI CCNNGG 4 cut(s) 174, 402, 465, 633
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMII CTCAG 4 cut(s) 132, 214, 254, 605
BseNI ACTGG 3 cut(s) 166, 220, 391
BseX3I CGGCCG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 106
Bsh1285I CGRYCG 1 cut(s) 287
BshFI GGCC 3 cut(s) 286, 491, 496
BsiEI CGRYCG 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 488
BsiSI CCGG 3 cut(s) 287, 402, 497
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 578
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 3 cut(s) 286, 491, 496
Bsp119I TTCGAA 2 cut(s) 16, 261
Bsp1286I GDGCHC 1 cut(s) 488
Bsp143I GATC 3 cut(s) 280, 499, 537
Bsp1720I GCTNAGC 1 cut(s) 551
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 3 cut(s) 54, 101, 104
BspANI GGCC 3 cut(s) 286, 491, 496
BspCNI CTCAG 4 cut(s) 131, 213, 253, 606
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 463, 566
BspPI GGATC 2 cut(s) 288, 507
BspQI GCTCTTC 1 cut(s) 240
BspT104I TTCGAA 2 cut(s) 16, 261
BsrI ACTGG 3 cut(s) 166, 220, 391
BssECI CCNNGG 4 cut(s) 174, 402, 465, 633
BssMI GATC 3 cut(s) 280, 499, 537
BssT1I CCWWGG 2 cut(s) 174, 465
Bst2UI CCWGG 2 cut(s) 493, 634
Bst4CI ACNGT 2 cut(s) 274, 376
Bst6I CTCTTC 1 cut(s) 240
BstBI TTCGAA 2 cut(s) 16, 261
BstC8I GCNNGC 2 cut(s) 249, 548
BstDEI CTNAG 7 cut(s) 118, 191, 200, 240, 425, 551, 614
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 2 cut(s) 25, 87
BstKTI GATC 3 cut(s) 283, 502, 540
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 3 cut(s) 280, 499, 537
BstMCI CGRYCG 1 cut(s) 287
BstMWI GCNNNNNNNGC 7 cut(s) 31, 84, 119, 155, 283, 292, 552
BstNI CCWGG 2 cut(s) 493, 634
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 4 cut(s) 286, 401, 491, 632
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 410, 414
BstXI CCANNNNNNTGG 1 cut(s) 472
BstZI CGGCCG 1 cut(s) 284
BsuRI GGCC 3 cut(s) 286, 491, 496
BtgI CCRYGG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 2 cut(s) 279, 302
Cac8I GCNNGC 2 cut(s) 249, 548
CaiI CAGNNNCTG 1 cut(s) 613
CfoI GCGC 2 cut(s) 25, 87
Cfr13I GGNCC 1 cut(s) 565
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 175
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 7 cut(s) 118, 191, 200, 240, 425, 551, 614
DpnI GATC 3 cut(s) 282, 501, 539
DpnII GATC 3 cut(s) 280, 499, 537
EaeI YGGCCR 2 cut(s) 284, 494
EagI CGGCCG 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 1 cut(s) 90
EclXI CGGCCG 1 cut(s) 284
Eco130I CCWWGG 2 cut(s) 174, 465
Eco47I GGWCC 1 cut(s) 565
Eco52I CGGCCG 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 174, 351
EcoO109I RGGNCCY 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 195
EcoRII CCWGG 2 cut(s) 491, 632
EcoT14I CCWWGG 2 cut(s) 174, 465
ErhI CCWWGG 2 cut(s) 174, 465
FaeI CATG 1 cut(s) 178
FaqI GGGAC 1 cut(s) 578
FatI CATG 1 cut(s) 174
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 104, 245
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 104, 245
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 24, 86
GluI GCNGC 2 cut(s) 104, 245
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 3 cut(s) 286, 491, 496
HapII CCGG 3 cut(s) 287, 402, 497
HgaI GACGC 1 cut(s) 404
HhaI GCGC 2 cut(s) 25, 87
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 2 cut(s) 23, 85
HinP1I GCGC 2 cut(s) 23, 85
HinfI GANTC 3 cut(s) 13, 141, 263
HpaII CCGG 3 cut(s) 287, 402, 497
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 3 cut(s) 154, 226, 515
Hpy188III TCNNGA 2 cut(s) 202, 529
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 3 cut(s) 134, 306, 591
HpyCH4III ACNGT 2 cut(s) 274, 376
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 133, 277
HpyF10VI GCNNNNNNNGC 7 cut(s) 31, 84, 119, 155, 283, 292, 552
HpyF3I CTNAG 7 cut(s) 118, 191, 200, 240, 425, 551, 614
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 2 cut(s) 23, 85
Kzo9I GATC 3 cut(s) 280, 499, 537
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 404
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 349
MalI GATC 3 cut(s) 282, 501, 539
MboI GATC 3 cut(s) 280, 499, 537
MboII GAAGA 6 cut(s) 39, 89, 227, 344, 410, 419
MhlI GDGCHC 1 cut(s) 488
MluCI AATT 5 cut(s) 39, 195, 257, 317, 342
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 485
MnlI CCTC 4 cut(s) 202, 249, 501, 603
MroXI GAANNNNTTC 2 cut(s) 159, 375
MseI TTAA 1 cut(s) 339
MspI CCGG 3 cut(s) 287, 402, 497
MspR9I CCNGG 4 cut(s) 288, 403, 493, 634
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 2 cut(s) 493, 634
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 7 cut(s) 31, 84, 119, 155, 283, 292, 552
NciI CCSGG 2 cut(s) 288, 403
NcoI CCATGG 1 cut(s) 174
NdeII GATC 3 cut(s) 280, 499, 537
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 2 cut(s) 463, 566
NmeAIII GCCGAG 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 349
NspV TTCGAA 2 cut(s) 16, 261
PciSI GCTCTTC 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PctI GAATGC 1 cut(s) 548
PdmI GAANNNNTTC 2 cut(s) 159, 375
PfeI GAWTC 2 cut(s) 13, 263
PkrI GCNGC 2 cut(s) 105, 246
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PpuMI RGGWCCY 1 cut(s) 565
PshAI GACNNNNGTC 1 cut(s) 414
PsiI TTATAA 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 565
Psp6I CCWGG 2 cut(s) 491, 632
PspGI CCWGG 2 cut(s) 491, 632
PspN4I GGNNCC 2 cut(s) 463, 566
PspPI GGNCC 1 cut(s) 565
PspPPI RGGWCCY 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 613
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 2 cut(s) 104, 245
Sau3AI GATC 3 cut(s) 280, 499, 537
Sau96I GGNCC 1 cut(s) 565
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 4 cut(s) 288, 403, 493, 634
SduI GDGCHC 1 cut(s) 488
SetI ASST 8 cut(s) 31, 184, 213, 401, 414, 426, 512, 570
SfaNI GCATC 1 cut(s) 65
SfuI TTCGAA 2 cut(s) 16, 261
SinI GGWCC 1 cut(s) 565
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 5 cut(s) 39, 195, 257, 317, 342
SsiI CCGC 3 cut(s) 54, 101, 104
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 4 cut(s) 286, 401, 491, 632
StyI CCWWGG 2 cut(s) 174, 465
TaaI ACNGT 2 cut(s) 274, 376
TaiI ACGT 1 cut(s) 414
TaqI TCGA 4 cut(s) 7, 16, 261, 540
TasI AATT 5 cut(s) 39, 195, 257, 317, 342
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 2 cut(s) 13, 263
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 2 cut(s) 279, 302
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 269, 384
TspRI CASTG 2 cut(s) 279, 302
VpaK11BI GGWCC 1 cut(s) 565
XapI RAATTY 2 cut(s) 195, 257
XmnI GAANNNNTTC 2 cut(s) 159, 375
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.