Rorug06G0291800

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013035
Physical Location & Seq
Forward (+)
44411773 .. 44412153
381 bp
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UTR
Exon/CDS
Intron
Rorug06G0291800.1

Sequence Viewer

Length: 381 bp
ATGCTGGGAGGTGGTGCTTGTCGATTGAGTGGGTTGATATCCCCGGAACACGCTGAAATCTTGGCCTGTAAGGTGGCTTTGGAGTTTGCGGTGGAGCATGGCTTTGGGCCAGTTATGCTGGAGACTGATGCAATGGAGGTTCAGCGTCAACTCTCAGCTTATGATGCTGTTAATACATCATTGCTTGGCAGAATATATGAAGATGTTAGGCCGCTGCTGGAGACTCAGAATGTCTTACATGTGAGTCACATAGGTAGGCATGGAAATATGGTGGCCCATCTGCTAGCTCGCCATGCTTGTTCTCTAACAGAGAATGAGTTTTATTTTTCAGTCCCCGATGTTTTACAAGCTGTAATTGCAGCTGATATTTGTGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

126

Amino Acids

13.67

Weight (kDa)

5.17

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 4 - 99 2.6e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31930
fragaria_vesca FvH4_2g40840 FvH4_2g40840
malus_domestica MD15G1037100.v1.1
prunus_persica Prupe.1G391100_v2.0.a1 Prupe.1G391100_v2.0.a1
pyrus_communis pycom08g04940 pycom15g03430
rosa_chinensis RchiOBHm_Chr6g0299721
rosa_laevigata RLG00000011393
rosa_roxburghii Rroxscaffold_7G00168410
rosa_rugosa Rorug06G0291800 Rorug06G0291900
rosa_samantha Rh6AG402700 Rh6BG411300 Rh6CG417300 Rh6DG404200
rosa_wichuraiana Rw6G035250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 89, 212
AflIII ACRYGT 1 cut(s) 238
AluBI AGCT 4 cut(s) 158, 287, 350, 362
AluI AGCT 4 cut(s) 158, 287, 350, 362
Alw26I GTCTC 2 cut(s) 116, 215
AoxI GGCC 4 cut(s) 63, 107, 209, 273
ApeKI GCWGC 2 cut(s) 214, 359
AspS9I GGNCC 2 cut(s) 107, 274
AsuC2I CCSGG 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 283
BbvI GCAGC 2 cut(s) 201, 371
BccI CCATC 1 cut(s) 285
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 116, 215
BfaI CTAG 1 cut(s) 284
BisI GCNGC 3 cut(s) 212, 215, 360
BlsI GCNGC 3 cut(s) 213, 216, 361
Bme1390I CCNGG 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 107, 274
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 2 cut(s) 118, 154
BmtI GCTAGC 1 cut(s) 287
BpmI CTGGAG 2 cut(s) 140, 239
BpuMI CCSGG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 110
Bse3DI GCAATG 2 cut(s) 138, 179
BseDI CCNNGG 1 cut(s) 42
BseMI GCAATG 2 cut(s) 138, 179
BseMII CTCAG 2 cut(s) 168, 239
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 2 cut(s) 201, 371
BseYI CCCAGC 1 cut(s) 4
BshFI GGCC 4 cut(s) 65, 109, 211, 275
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 116, 215
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 4 cut(s) 65, 109, 211, 275
BspACI CCGC 2 cut(s) 89, 212
BspANI GGCC 4 cut(s) 65, 109, 211, 275
BspCNI CTCAG 2 cut(s) 167, 238
BspOI GCTAGC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 138, 179
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 285, 289
BstDEI CTNAG 2 cut(s) 154, 225
BstMAI GTCTC 2 cut(s) 116, 215
BstMWI GCNNNNNNNGC 4 cut(s) 115, 164, 293, 356
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 201, 371
BsuRI GGCC 4 cut(s) 65, 109, 211, 275
Cac8I GCNNGC 2 cut(s) 285, 289
Cfr13I GGNCC 2 cut(s) 107, 274
CseI GACGC 1 cut(s) 134
CviAII CATG 4 cut(s) 98, 239, 260, 293
DdeI CTNAG 2 cut(s) 154, 225
Eco32I GATATC 1 cut(s) 39
EcoRV GATATC 1 cut(s) 39
FaeI CATG 4 cut(s) 101, 242, 263, 296
FaqI GGGAC 1 cut(s) 317
FatI CATG 4 cut(s) 97, 238, 259, 292
Fnu4HI GCNGC 3 cut(s) 212, 215, 360
Fsp4HI GCNGC 3 cut(s) 212, 215, 360
FspBI CTAG 1 cut(s) 284
GluI GCNGC 3 cut(s) 212, 215, 360
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 2 cut(s) 140, 239
HaeIII GGCC 4 cut(s) 65, 109, 211, 275
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 134
Hin1II CATG 4 cut(s) 101, 242, 263, 296
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HinfI GANTC 2 cut(s) 223, 244
HpaII CCGG 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 228
Hpy8I GTNNAC 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 131, 359
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 164, 293, 356
HpyF3I CTNAG 2 cut(s) 154, 225
Hsp92II CATG 4 cut(s) 101, 242, 263, 296
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 5 cut(s) 57, 79, 104, 123, 203
Lsp1109I GCAGC 2 cut(s) 201, 371
LweI GCATC 2 cut(s) 118, 154
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 245
MboII GAAGA 1 cut(s) 212
MluCI AATT 1 cut(s) 354
MlyI GAGTC 2 cut(s) 217, 253
MnlI CCTC 1 cut(s) 130
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 2 cut(s) 214, 362
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 44
MwoI GCNNNNNNNGC 4 cut(s) 115, 164, 293, 356
NciI CCSGG 1 cut(s) 44
NheI GCTAGC 1 cut(s) 283
NlaIII CATG 4 cut(s) 101, 242, 263, 296
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 242
PciI ACATGT 1 cut(s) 238
PkrI GCNGC 3 cut(s) 213, 216, 361
PleI GAGTC 2 cut(s) 217, 252
PpsI GAGTC 2 cut(s) 217, 252
PscI ACATGT 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 4
PspPI GGNCC 2 cut(s) 107, 274
PvuII CAGCTG 1 cut(s) 362
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 3 cut(s) 212, 215, 360
Sau96I GGNCC 2 cut(s) 107, 274
SchI GAGTC 2 cut(s) 217, 253
ScrFI CCNGG 1 cut(s) 44
SetI ASST 8 cut(s) 13, 75, 141, 160, 256, 289, 352, 364
SfaNI GCATC 2 cut(s) 118, 154
Sse9I AATT 1 cut(s) 354
SsiI CCGC 2 cut(s) 89, 212
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 42
TaqI TCGA 1 cut(s) 22
TasI AATT 1 cut(s) 354
TauI GCSGC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 214, 359
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 213
XceI RCATGY 1 cut(s) 242
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.