pycom15g03430

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013035
Physical Location & Seq
Forward (+)
2111906 .. 2113419
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g03430.1

Sequence Viewer

Length: 735 bp
ATGGCTCGACTCATTCGAACCCCTCGAACCGCGCTCCCATTTTTTGCTTGTTGCGCATCCAAAACCCTAGTCAATGCCGTTCAGCGCCACCCAAATCCTCCGCTGCGGAAGGCAATCTCATCCTCTCTCTTCCACAGCAGACATTACGCTTCCGAAGCACTTTCCCAGTCGCCCATGGAAGCTAACATCATCAGAATCATCAGAAACGAAGTGGAGTACCAGTCCGAGTATGCTCCTCCTCAGCAGCCTGCCACGAAATTCGAATCGTTTACCGTCCAAGATCGACCGGGTGAGCAGTGGATTACAATGAGAAGGAGATTTGGAGACACTGAAGATATTAAAATTGAAGTCACTATGTTTGATGGGTATGAAACTGCTCCCAAAACTGGAGATGACAGCTCAGGAGAAGATGTGCGTCTTCACCTTAGTATGCTTGTTGATATTACAAAGGGGGATGATTCCAAGGATTTGGAGTTTCTGTGCTCGGCCTGGCCGGATCGCTTGGAGGTTCAGAAAGTTTATGTTCTTAAGCGTGATCGAATGCCGGCTAAACCTTATATGGGACCTGATTTCAGGAGTTTGAATGGAAGGATTCAACAGAGGTTCAGTGAGTATTTAGAAGCAAGGGGAGTGAATGATGAGCTTTCTGTTTTCTTGCATCAATACATGATGAACAAGGATAGAATAGAACTGATCAAATGGCTGGGAAAAGTCAAGTCGTTTGTGGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

245

Amino Acids

28.27

Weight (kDa)

8.35

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 80 - 242 6.7e-29 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31930
fragaria_vesca FvH4_2g40840 FvH4_2g40840
malus_domestica MD15G1037100.v1.1
prunus_persica Prupe.1G391100_v2.0.a1 Prupe.1G391100_v2.0.a1
pyrus_communis pycom08g04940 pycom15g03430
rosa_chinensis RchiOBHm_Chr6g0299721
rosa_laevigata RLG00000011393
rosa_roxburghii Rroxscaffold_7G00168410
rosa_rugosa Rorug06G0291800 Rorug06G0291900
rosa_samantha Rh6AG402700 Rh6BG411300 Rh6CG417300 Rh6DG404200
rosa_wichuraiana Rw6G035250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 55
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 30, 101, 106
AclWI GGATC 1 cut(s) 504
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 386, 560
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 3 cut(s) 347, 583, 596
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 3 cut(s) 182, 399, 643
AluI AGCT 3 cut(s) 182, 399, 643
Alw21I GWGCWC 1 cut(s) 485
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 1 cut(s) 504
AoxI GGCC 2 cut(s) 486, 491
ApeKI GCWGC 2 cut(s) 103, 244
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AspLEI GCGC 3 cut(s) 34, 56, 87
AspS9I GGNCC 1 cut(s) 563
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 302, 413
AsuII TTCGAA 2 cut(s) 16, 261
AvaII GGWCC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 485
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 90, 256
BccI CCATC 1 cut(s) 356
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 490
BclI TGATCA 1 cut(s) 693
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 68
BfoI RGCGCY 1 cut(s) 88
BfrI CTTAAG 1 cut(s) 527
BisI GCNGC 2 cut(s) 104, 245
BlsI GCNGC 2 cut(s) 105, 246
Bme1390I CCNGG 2 cut(s) 288, 490
Bme18I GGWCC 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 563
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 2 cut(s) 288, 490
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 65, 667
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 2 cut(s) 240, 400
Bpu14I TTCGAA 2 cut(s) 16, 261
BpuMI CCSGG 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 174, 462
BsaXI ACNNNNNCTCC 6 cut(s) 206, 236, 396, 426, 464, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 560
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 3 cut(s) 166, 220, 391
BseBI CCWGG 1 cut(s) 490
BseDI CCNNGG 2 cut(s) 174, 462
BseGI GGATG 3 cut(s) 56, 119, 460
BseLI CCNNNNNNNGG 2 cut(s) 386, 560
BseMII CTCAG 2 cut(s) 254, 414
BseNI ACTGG 3 cut(s) 166, 220, 391
BseRI GAGGAG 2 cut(s) 225, 228
BseXI GCAGC 2 cut(s) 90, 256
BseYI CCCAGC 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 287
BshFI GGCC 2 cut(s) 488, 493
BsiEI CGRYCG 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 485
BsiSI CCGG 3 cut(s) 287, 494, 545
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 2 cut(s) 386, 560
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 576
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 2 cut(s) 488, 493
Bsp119I TTCGAA 2 cut(s) 16, 261
Bsp1286I GDGCHC 1 cut(s) 485
Bsp143I GATC 4 cut(s) 280, 496, 535, 693
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 3 cut(s) 30, 101, 106
BspANI GGCC 2 cut(s) 488, 493
BspCNI CTCAG 2 cut(s) 253, 413
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 564
BspPI GGATC 1 cut(s) 504
BspT104I TTCGAA 2 cut(s) 16, 261
BspTI CTTAAG 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 544
BsrI ACTGG 3 cut(s) 166, 220, 391
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 2 cut(s) 174, 462
BssMI GATC 4 cut(s) 280, 496, 535, 693
BssT1I CCWWGG 2 cut(s) 174, 462
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 134
BstAFI CTTAAG 1 cut(s) 527
BstBI TTCGAA 2 cut(s) 16, 261
BstC8I GCNNGC 2 cut(s) 249, 546
BstDEI CTNAG 3 cut(s) 240, 400, 425
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 56, 119, 460
BstFNI CGCG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 3 cut(s) 34, 56, 87
BstKTI GATC 4 cut(s) 283, 499, 538, 696
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 4 cut(s) 280, 496, 535, 693
BstMCI CGRYCG 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 53, 155
BstNI CCWGG 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 286, 488
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 90, 256
BstV2I GAAGAC 1 cut(s) 410
BstXI CCANNNNNNTGG 1 cut(s) 469
BsuRI GGCC 2 cut(s) 488, 493
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 3 cut(s) 56, 119, 460
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 3 cut(s) 302, 327, 613
Cac8I GCNNGC 2 cut(s) 249, 546
CfoI GCGC 3 cut(s) 34, 56, 87
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 563
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 175, 667
CviJI RGCY 9 cut(s) 5, 182, 247, 399, 488, 493, 548, 643, 703
CviKI_1 RGCY 9 cut(s) 5, 182, 247, 399, 488, 493, 548, 643, 703
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 3 cut(s) 240, 400, 425
DpnI GATC 4 cut(s) 282, 498, 537, 695
DpnII GATC 4 cut(s) 280, 496, 535, 693
EaeI YGGCCR 1 cut(s) 491
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 174, 462
Eco47I GGWCC 1 cut(s) 563
Eco57I CTGAAG 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 488
EcoT14I CCWWGG 2 cut(s) 174, 462
ErhI CCWWGG 2 cut(s) 174, 462
FaeI CATG 2 cut(s) 178, 670
FaiI YATR 9 cut(s) 176, 231, 356, 369, 431, 522, 558, 560, 668
FaqI GGGAC 1 cut(s) 576
FatI CATG 2 cut(s) 174, 666
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 2 cut(s) 104, 245
FokI GGATG 3 cut(s) 43, 106, 467
Fsp4HI GCNGC 2 cut(s) 104, 245
FspBI CTAG 1 cut(s) 68
FspI TGCGCA 1 cut(s) 55
GlaI GCGC 3 cut(s) 33, 55, 86
GluI GCNGC 2 cut(s) 104, 245
GsaI CCCAGC 1 cut(s) 707
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 2 cut(s) 488, 493
HapII CCGG 3 cut(s) 287, 494, 545
HgaI GACGC 1 cut(s) 404
HhaI GCGC 3 cut(s) 34, 56, 87
Hin1II CATG 2 cut(s) 178, 670
Hin6I GCGC 3 cut(s) 32, 54, 85
HinP1I GCGC 3 cut(s) 32, 54, 85
HinfI GANTC 5 cut(s) 9, 195, 263, 458, 592
HpaII CCGG 3 cut(s) 287, 494, 545
HphI GGTGA 2 cut(s) 302, 413
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 5 cut(s) 154, 194, 203, 226, 513
Hpy188III TCNNGA 2 cut(s) 402, 574
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 3 cut(s) 103, 306, 582
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 658
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 155
HpyF3I CTNAG 3 cut(s) 240, 400, 425
Hsp92II CATG 2 cut(s) 178, 670
HspAI GCGC 3 cut(s) 32, 54, 85
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 4 cut(s) 280, 496, 535, 693
LmnI GCTCC 3 cut(s) 39, 238, 382
Lsp1109I GCAGC 2 cut(s) 90, 256
LweI GCATC 2 cut(s) 65, 667
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 349
MalI GATC 4 cut(s) 282, 498, 537, 695
MboI GATC 4 cut(s) 280, 496, 535, 693
MboII GAAGA 4 cut(s) 121, 344, 410, 419
MhlI GDGCHC 1 cut(s) 485
MluCI AATT 2 cut(s) 257, 342
MlyI GAGTC 1 cut(s) 3
MnlI CCTC 7 cut(s) 33, 108, 133, 246, 249, 499, 594
MroNI GCCGGC 1 cut(s) 544
MseI TTAA 2 cut(s) 339, 528
MspA1I CMGCKG 1 cut(s) 103
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 3 cut(s) 287, 494, 545
MspR9I CCNGG 2 cut(s) 288, 490
Mva1269I GAATGC 1 cut(s) 546
MvaI CCWGG 1 cut(s) 490
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 53, 155
NaeI GCCGGC 1 cut(s) 546
NciI CCSGG 1 cut(s) 288
NcoI CCATGG 1 cut(s) 174
NdeII GATC 4 cut(s) 280, 496, 535, 693
NgoMIV GCCGGC 1 cut(s) 544
NlaIII CATG 2 cut(s) 178, 670
NlaIV GGNNCC 1 cut(s) 564
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 1 cut(s) 349
NsbI TGCGCA 1 cut(s) 55
NspV TTCGAA 2 cut(s) 16, 261
PcsI WCGNNNNNNNCGW 2 cut(s) 13, 22
PctI GAATGC 1 cut(s) 546
PdiI GCCGGC 1 cut(s) 546
PfeI GAWTC 4 cut(s) 195, 263, 458, 592
PkrI GCNGC 2 cut(s) 105, 246
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
PpuMI RGGWCCY 1 cut(s) 563
Psp5II RGGWCCY 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 488
PspFI CCCAGC 1 cut(s) 703
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 1 cut(s) 563
PspPPI RGGWCCY 1 cut(s) 563
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 339, 528
SatI GCNGC 2 cut(s) 104, 245
Sau3AI GATC 4 cut(s) 280, 496, 535, 693
Sau96I GGNCC 1 cut(s) 563
SchI GAGTC 1 cut(s) 3
ScrFI CCNGG 2 cut(s) 288, 490
SduI GDGCHC 1 cut(s) 485
SetI ASST 8 cut(s) 184, 401, 426, 510, 556, 568, 605, 645
SfaNI GCATC 2 cut(s) 65, 667
SfuI TTCGAA 2 cut(s) 16, 261
SinI GGWCC 1 cut(s) 563
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 2 cut(s) 257, 342
SsiI CCGC 3 cut(s) 30, 101, 106
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 286, 488
StyI CCWWGG 2 cut(s) 174, 462
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 6 cut(s) 7, 16, 25, 261, 283, 538
TasI AATT 2 cut(s) 257, 342
TfiI GAWTC 4 cut(s) 195, 263, 458, 592
Tru1I TTAA 2 cut(s) 339, 528
Tru9I TTAA 2 cut(s) 339, 528
TscAI CASTG 3 cut(s) 302, 334, 613
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 2 cut(s) 103, 244
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 384, 686
TspRI CASTG 3 cut(s) 302, 334, 613
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 563
XapI RAATTY 1 cut(s) 257
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.