Rh6CG417300

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013035
Physical Location & Seq
Reverse (-)
60107516 .. 60108578
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG417300.1

Sequence Viewer

Length: 696 bp
ATGGCTCGTTTAATCCGAATTGCTCAAACTACGCTTCGGAATTGTTCTTCTTGTTCACCCAAAACCCTAATTAATCCTCCTCTGCTGCAAATGCACAACAGACCTTACGCTTCTGAGGCACTCTCCACATCGCCCTTGACTGCCAACATCCTTAGAATCCTGCGCACTGAAATCGAGTACCAGTCAGAGTCTGCTCCTCCTCATCAGCCTCCTGCAAAGTTCAATTCTTTTGCGGTGGAAGATCGGCCCGGGGAGCAGTGGATTACAATGAGACGCAAATTTGGAGATACTGAAGAGATTAAGATTGAAGTTACTATGTTTGATGGGTATGAATCTGTTCCCAAGACTGGAGATGACGGCTCTGGGGAAGATTTGCGTCTTCACATTAGTGTGCTTGTTGATATTTCCAAGGGTGACACCTCCAATGATCTCGAGTTCCTGTGCTCGGCCTGGCCGGACCGTTTGGAGGTTCAGAAAGTTTATGTTCTTCACCGTGGTAGAATGCCGGCGAAGCCTTATTTGGGACCTGATTTCAGGGATGTGAATGAGGAGATTCAACAGAAGCTTCGTGGTTATTTAGATGCAAGGGGAGTAAATGATGAGCTTTCTTTGTTCTTGCATCAGTATATGATGAACAAGGATAGAATAGAACTTATCCGATGGTTGGGGAATCTCAAGTTGGCTGTGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

231

Amino Acids

26.47

Weight (kDa)

6.0

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 55 - 226 3.3e-25 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31930
fragaria_vesca FvH4_2g40840 FvH4_2g40840
malus_domestica MD15G1037100.v1.1
prunus_persica Prupe.1G391100_v2.0.a1 Prupe.1G391100_v2.0.a1
pyrus_communis pycom08g04940 pycom15g03430
rosa_chinensis RchiOBHm_Chr6g0299721
rosa_laevigata RLG00000011393
rosa_roxburghii Rroxscaffold_7G00168410
rosa_rugosa Rorug06G0291800 Rorug06G0291900
rosa_samantha Rh6AG402700 Rh6BG411300 Rh6CG417300 Rh6DG404200
rosa_wichuraiana Rw6G035250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 164
AciI CCGC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 452
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 5 cut(s) 347, 445, 466, 521, 664
AgsI TTSAA 3 cut(s) 223, 308, 557
AjnI CCWGG 1 cut(s) 449
AjuI GAANNNNNNNTTGG 4 cut(s) 503, 535, 662, 694
AleI CACNNNNGTG 1 cut(s) 387
AluBI AGCT 2 cut(s) 565, 604
AluI AGCT 2 cut(s) 565, 604
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 1 cut(s) 265
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 2 cut(s) 248, 431
AoxI GGCC 3 cut(s) 245, 447, 452
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 278
AseI ATTAAT 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 336
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 3 cut(s) 246, 457, 524
AsuC2I CCSGG 2 cut(s) 249, 250
AsuHPI GGTGA 3 cut(s) 48, 425, 482
AvaI CYCGRG 2 cut(s) 248, 431
AvaII GGWCC 2 cut(s) 457, 524
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 72
BccI CCATC 2 cut(s) 317, 654
BceAI ACGGC 1 cut(s) 373
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 1 cut(s) 451
BcnI CCSGG 2 cut(s) 249, 250
BcoDI GTCTC 1 cut(s) 265
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 3 cut(s) 249, 250, 451
Bme18I GGWCC 2 cut(s) 457, 524
BmeT110I CYCGRG 2 cut(s) 248, 431
BmgT120I GGNCC 3 cut(s) 246, 457, 524
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 3 cut(s) 249, 250, 451
BmsI GCATC 2 cut(s) 571, 628
BpiI GAAGAC 1 cut(s) 371
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BpmI CTGGAG 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 659
BpuMI CCSGG 2 cut(s) 249, 250
BsaJI CCNNGG 4 cut(s) 248, 249, 408, 493
Bsc4I CCNNNNNNNGG 5 cut(s) 347, 445, 466, 521, 664
Bse118I RCCGGY 1 cut(s) 505
Bse1I ACTGG 2 cut(s) 181, 352
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 4 cut(s) 248, 249, 408, 493
BseGI GGATG 2 cut(s) 147, 544
BseLI CCNNNNNNNGG 5 cut(s) 347, 445, 466, 521, 664
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 181, 352
BseRI GAGGAG 4 cut(s) 69, 186, 189, 563
BseXI GCAGC 1 cut(s) 72
BshFI GGCC 3 cut(s) 247, 449, 454
BsiHKAI GWGCWC 1 cut(s) 446
BsiHKCI CYCGRG 2 cut(s) 248, 431
BsiSI CCGG 3 cut(s) 249, 455, 506
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 5 cut(s) 347, 445, 466, 521, 664
BsmAI GTCTC 1 cut(s) 265
BsmBI CGTCTC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 537
BsmI GAATGC 1 cut(s) 507
BsnI GGCC 3 cut(s) 247, 449, 454
BsoBI CYCGRG 2 cut(s) 248, 431
Bsp1286I GDGCHC 1 cut(s) 446
Bsp143I GATC 2 cut(s) 241, 427
BspACI CCGC 1 cut(s) 233
BspANI GGCC 3 cut(s) 247, 449, 454
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 505
BsrI ACTGG 2 cut(s) 181, 352
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 4 cut(s) 248, 249, 408, 493
BssMI GATC 2 cut(s) 241, 427
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 2 cut(s) 461, 494
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 2 cut(s) 114, 152
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 2 cut(s) 147, 544
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 2 cut(s) 244, 430
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 2 cut(s) 241, 427
BstMWI GCNNNNNNNGC 4 cut(s) 91, 116, 253, 511
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 3 cut(s) 247, 248, 449
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 371
BsuRI GGCC 3 cut(s) 247, 449, 454
BtgI CCRYGG 1 cut(s) 493
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 2 cut(s) 147, 544
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 165, 263
Cac8I GCNNGC 1 cut(s) 507
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 3 cut(s) 246, 457, 524
Cfr9I CCCGGG 1 cut(s) 248
CpoI CGGWCCG 1 cut(s) 457
CseI GACGC 2 cut(s) 282, 365
Csp6I GTAC 1 cut(s) 178
CspI CGGWCCG 1 cut(s) 457
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 114, 152
DpnI GATC 2 cut(s) 243, 429
DpnII GATC 2 cut(s) 241, 427
EaeI YGGCCR 1 cut(s) 452
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 408
Eco47I GGWCC 2 cut(s) 457, 524
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 2 cut(s) 248, 431
EcoO109I RGGNCCY 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 265
FaiI YATR 5 cut(s) 317, 330, 483, 627, 629
FaqI GGGAC 1 cut(s) 537
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 2 cut(s) 134, 551
Fsp4HI GCNGC 1 cut(s) 86
FspI TGCGCA 1 cut(s) 164
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 3 cut(s) 247, 449, 454
HapII CCGG 3 cut(s) 249, 455, 506
HgaI GACGC 2 cut(s) 282, 365
HhaI GCGC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 5 cut(s) 156, 188, 332, 553, 670
HpaII CCGG 3 cut(s) 249, 455, 506
HphI GGTGA 3 cut(s) 48, 425, 482
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 6 cut(s) 17, 39, 115, 187, 474, 659
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 461, 494
HpyCH4V TGCA 5 cut(s) 88, 94, 215, 584, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 116, 253, 511
HpyF3I CTNAG 2 cut(s) 114, 152
HspAI GCGC 1 cut(s) 163
KroI GCCGGC 1 cut(s) 505
KroNI GCCGGC 1 cut(s) 507
Kzo9I GATC 2 cut(s) 241, 427
LmnI GCTCC 2 cut(s) 199, 253
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 2 cut(s) 571, 628
MaeIII GTNAC 2 cut(s) 310, 413
MalI GATC 2 cut(s) 243, 429
MboI GATC 2 cut(s) 241, 427
MboII GAAGA 6 cut(s) 39, 251, 305, 371, 380, 479
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 5 cut(s) 18, 40, 69, 223, 278
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 9 cut(s) 87, 90, 109, 207, 210, 219, 430, 460, 541
MroNI GCCGGC 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 3 cut(s) 11, 72, 300
MslI CAYNNNNRTG 2 cut(s) 387, 389
MspI CCGG 3 cut(s) 249, 455, 506
MspR9I CCNGG 3 cut(s) 249, 250, 451
Mva1269I GAATGC 1 cut(s) 507
MvaI CCWGG 1 cut(s) 451
MwoI GCNNNNNNNGC 4 cut(s) 91, 116, 253, 511
NaeI GCCGGC 1 cut(s) 507
NciI CCSGG 2 cut(s) 249, 250
NdeII GATC 2 cut(s) 241, 427
NgoMIV GCCGGC 1 cut(s) 505
NlaIV GGNNCC 1 cut(s) 525
NmeAIII GCCGAG 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 413
NsbI TGCGCA 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 387
PaeR7I CTCGAG 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PctI GAATGC 1 cut(s) 507
PdiI GCCGGC 1 cut(s) 507
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 4 cut(s) 156, 332, 553, 670
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 524
PshBI ATTAAT 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 525
PspPI GGNCC 3 cut(s) 246, 457, 524
PspPPI RGGWCCY 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 2 cut(s) 387, 389
Rsr2I CGGWCCG 1 cut(s) 457
RsrII CGGWCCG 1 cut(s) 457
SaqAI TTAA 3 cut(s) 11, 72, 300
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 2 cut(s) 241, 427
Sau96I GGNCC 3 cut(s) 246, 457, 524
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 249, 250, 451
SduI GDGCHC 1 cut(s) 446
SetI ASST 6 cut(s) 106, 422, 471, 529, 567, 606
SfaNI GCATC 2 cut(s) 571, 628
Sfr274I CTCGAG 1 cut(s) 431
SinI GGWCC 2 cut(s) 457, 524
SlaI CTCGAG 1 cut(s) 431
SmaI CCCGGG 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 387, 389
SmlI CTYRAG 2 cut(s) 431, 674
SmoI CTYRAG 2 cut(s) 431, 674
Sse9I AATT 5 cut(s) 18, 40, 69, 223, 278
SsiI CCGC 1 cut(s) 233
StyD4I CCNGG 3 cut(s) 247, 248, 449
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 461, 494
TaqI TCGA 2 cut(s) 174, 432
TasI AATT 5 cut(s) 18, 40, 69, 223, 278
TfiI GAWTC 4 cut(s) 156, 332, 553, 670
Tru1I TTAA 3 cut(s) 11, 72, 300
Tru9I TTAA 3 cut(s) 11, 72, 300
TscAI CASTG 2 cut(s) 172, 263
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 345, 647
TspMI CCCGGG 1 cut(s) 248
TspRI CASTG 2 cut(s) 172, 263
VpaK11BI GGWCC 2 cut(s) 457, 524
VspI ATTAAT 1 cut(s) 72
XapI RAATTY 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 431
XmaI CCCGGG 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.