Rh6DG404200

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013035
Physical Location & Seq
Reverse (-)
59210139 .. 59211226
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG404200.1

Sequence Viewer

Length: 708 bp
ATGGCTCGTTTAATCCGAATTGCTCAAACTACGCTTCGGAATTGTTCTTCTTGTTCACCCAAAACCCTAATTAATGGCCACCCAAATCCTCCTCTGCTGCAAATGCACAACAGACCTTACGCTTCTGAGGCACTCTCCACATCGCCCTTGACTGCCAACATCCTTAGAATCCTGCGCACTGAAATCGAGTACCAGTCAGAGTCTGCTCCTCCTCATCAGCCTCCTGCAAAGTTCAATTCTTTTGCGGTGGAAGATCGGCCCGGGGAGCAGTGGATTACAATGAGACGCAAATTTGGAGATACTGAAGAGATTAAGATTGAAGTTACTATGTTTGATGGGTATGAATCTGTTCCCAAGACTGGAGATGACGGCTCTGGGGAAGATTTGCGTCTTCACATTAGTGTGCTTGTTGATATTTCCAAGGGTGACGCCTCCAATGATCTCGAGTTCCTGTGCTCGGCCTGGCCGGACCGTTTGGAGGTTCAGAAAGTTTATGTTCTTCACCGTGGTAGAATGCCGGCGAAGCCTTATTTGGGACCCGATTTCAGGGATGTGAATGAGGACATTCAAAAGAAGCTTCGTGGTTATTTAGATGCAAGGGGAGTAAATGATGGGCTTTCTTTGTTCTTGCATCAGTATATGATGAACAAGGATAGAATAGAACTTATCCGATGGTTGGGGAATCTCAAGTTGGCTGTGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

235

Amino Acids

26.76

Weight (kDa)

6.6

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 59 - 230 3.1e-24 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31930
fragaria_vesca FvH4_2g40840 FvH4_2g40840
malus_domestica MD15G1037100.v1.1
prunus_persica Prupe.1G391100_v2.0.a1 Prupe.1G391100_v2.0.a1
pyrus_communis pycom08g04940 pycom15g03430
rosa_chinensis RchiOBHm_Chr6g0299721
rosa_laevigata RLG00000011393
rosa_roxburghii Rroxscaffold_7G00168410
rosa_rugosa Rorug06G0291800 Rorug06G0291900
rosa_samantha Rh6AG402700 Rh6BG411300 Rh6CG417300 Rh6DG404200
rosa_wichuraiana Rw6G035250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 176
AciI CCGC 1 cut(s) 245
AcoI YGGCCR 2 cut(s) 76, 464
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 6 cut(s) 359, 457, 478, 533, 546, 676
AgsI TTSAA 3 cut(s) 235, 320, 569
AjnI CCWGG 1 cut(s) 461
AjuI GAANNNNNNNTTGG 4 cut(s) 515, 547, 674, 706
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 1 cut(s) 577
AluI AGCT 1 cut(s) 577
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 1 cut(s) 277
AlwNI CAGNNNCTG 1 cut(s) 203
Ama87I CYCGRG 2 cut(s) 260, 443
AoxI GGCC 4 cut(s) 76, 257, 459, 464
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 290
AseI ATTAAT 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 258, 469, 536
AsuC2I CCSGG 2 cut(s) 261, 262
AsuHPI GGTGA 3 cut(s) 48, 437, 494
AvaI CYCGRG 2 cut(s) 260, 443
AvaII GGWCC 2 cut(s) 469, 536
BalI TGGCCA 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 1 cut(s) 84
BccI CCATC 3 cut(s) 329, 605, 666
BceAI ACGGC 1 cut(s) 385
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 463
BcnI CCSGG 2 cut(s) 261, 262
BcoDI GTCTC 1 cut(s) 277
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 3 cut(s) 261, 262, 463
Bme18I GGWCC 2 cut(s) 469, 536
BmeT110I CYCGRG 2 cut(s) 260, 443
BmgT120I GGNCC 3 cut(s) 258, 469, 536
BmiI GGNNCC 2 cut(s) 537, 538
BmrFI CCNGG 3 cut(s) 261, 262, 463
BmsI GCATC 2 cut(s) 583, 640
BpiI GAAGAC 1 cut(s) 383
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 2 cut(s) 261, 262
BsaHI GRCGYC 1 cut(s) 429
BsaJI CCNNGG 4 cut(s) 260, 261, 420, 505
Bsc4I CCNNNNNNNGG 6 cut(s) 359, 457, 478, 533, 546, 676
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 193, 364
BseBI CCWGG 1 cut(s) 463
BseDI CCNNGG 4 cut(s) 260, 261, 420, 505
BseGI GGATG 2 cut(s) 159, 556
BseLI CCNNNNNNNGG 6 cut(s) 359, 457, 478, 533, 546, 676
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 193, 364
BseRI GAGGAG 3 cut(s) 81, 198, 201
BseXI GCAGC 1 cut(s) 84
BshFI GGCC 4 cut(s) 78, 259, 461, 466
BsiHKAI GWGCWC 1 cut(s) 458
BsiHKCI CYCGRG 2 cut(s) 260, 443
BsiSI CCGG 3 cut(s) 261, 467, 518
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 6 cut(s) 359, 457, 478, 533, 546, 676
BsmAI GTCTC 1 cut(s) 277
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 549
BsmI GAATGC 1 cut(s) 519
BsnI GGCC 4 cut(s) 78, 259, 461, 466
BsoBI CYCGRG 2 cut(s) 260, 443
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 2 cut(s) 253, 439
BspACI CCGC 1 cut(s) 245
BspANI GGCC 4 cut(s) 78, 259, 461, 466
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 537, 538
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 2 cut(s) 193, 364
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 260, 261, 420, 505
BssMI GATC 2 cut(s) 253, 439
BssNI GRCGYC 1 cut(s) 429
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 2 cut(s) 473, 506
Bst6I CTCTTC 1 cut(s) 300
BstACI GRCGYC 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 2 cut(s) 126, 164
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 2 cut(s) 159, 556
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 256, 442
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 2 cut(s) 253, 439
BstMWI GCNNNNNNNGC 4 cut(s) 103, 128, 265, 523
BstNI CCWGG 1 cut(s) 463
BstSCI CCNGG 3 cut(s) 259, 260, 461
BstV1I GCAGC 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 383
BsuRI GGCC 4 cut(s) 78, 259, 461, 466
BtgI CCRYGG 1 cut(s) 505
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 159, 556
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 2 cut(s) 177, 275
Cac8I GCNNGC 1 cut(s) 519
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 3 cut(s) 258, 469, 536
Cfr9I CCCGGG 1 cut(s) 260
CpoI CGGWCCG 1 cut(s) 469
CseI GACGC 3 cut(s) 294, 377, 437
Csp6I GTAC 1 cut(s) 190
CspI CGGWCCG 1 cut(s) 469
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 2 cut(s) 126, 164
DpnI GATC 2 cut(s) 255, 441
DpnII GATC 2 cut(s) 253, 439
EaeI YGGCCR 2 cut(s) 76, 464
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 469, 536
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 2 cut(s) 260, 443
EcoO109I RGGNCCY 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
Esp3I CGTCTC 1 cut(s) 277
FaiI YATR 5 cut(s) 329, 342, 495, 639, 641
FaqI GGGAC 1 cut(s) 549
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 2 cut(s) 146, 563
Fsp4HI GCNGC 1 cut(s) 98
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 4 cut(s) 78, 259, 461, 466
HapII CCGG 3 cut(s) 261, 467, 518
HgaI GACGC 3 cut(s) 294, 377, 437
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 429
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 4 cut(s) 168, 200, 344, 682
HpaII CCGG 3 cut(s) 261, 467, 518
HphI GGTGA 3 cut(s) 48, 437, 494
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 6 cut(s) 17, 39, 127, 199, 486, 671
Hpy188III TCNNGA 1 cut(s) 443
Hpy8I GTNNAC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 473, 506
HpyCH4V TGCA 5 cut(s) 100, 106, 227, 596, 631
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 128, 265, 523
HpyF3I CTNAG 2 cut(s) 126, 164
Hsp92I GRCGYC 1 cut(s) 429
HspAI GCGC 1 cut(s) 175
KflI GGGWCCC 1 cut(s) 536
KroI GCCGGC 1 cut(s) 517
KroNI GCCGGC 1 cut(s) 519
Kzo9I GATC 2 cut(s) 253, 439
LmnI GCTCC 2 cut(s) 211, 265
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 2 cut(s) 583, 640
MaeIII GTNAC 2 cut(s) 322, 425
MalI GATC 2 cut(s) 255, 441
MboI GATC 2 cut(s) 253, 439
MboII GAAGA 6 cut(s) 39, 263, 317, 383, 392, 491
MhlI GDGCHC 1 cut(s) 458
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 5 cut(s) 18, 40, 69, 235, 290
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 9 cut(s) 99, 102, 121, 219, 222, 231, 442, 472, 553
Mox20I TGGCCA 1 cut(s) 78
MroNI GCCGGC 1 cut(s) 517
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 78
MseI TTAA 3 cut(s) 11, 72, 312
MslI CAYNNNNRTG 2 cut(s) 399, 401
Msp20I TGGCCA 1 cut(s) 78
MspI CCGG 3 cut(s) 261, 467, 518
MspR9I CCNGG 3 cut(s) 261, 262, 463
Mva1269I GAATGC 1 cut(s) 519
MvaI CCWGG 1 cut(s) 463
MwoI GCNNNNNNNGC 4 cut(s) 103, 128, 265, 523
NaeI GCCGGC 1 cut(s) 519
NciI CCSGG 2 cut(s) 261, 262
NdeII GATC 2 cut(s) 253, 439
NgoMIV GCCGGC 1 cut(s) 517
NlaIV GGNNCC 2 cut(s) 537, 538
NmeAIII GCCGAG 1 cut(s) 437
NmuCI GTSAC 1 cut(s) 425
NsbI TGCGCA 1 cut(s) 176
OliI CACNNNNGTG 1 cut(s) 399
PaeR7I CTCGAG 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PctI GAATGC 1 cut(s) 519
PdiI GCCGGC 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 3 cut(s) 168, 344, 682
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 536
PshBI ATTAAT 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 461
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 2 cut(s) 537, 538
PspPI GGNCC 3 cut(s) 258, 469, 536
PspPPI RGGWCCY 1 cut(s) 536
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 399, 401
Rsr2I CGGWCCG 1 cut(s) 469
RsrII CGGWCCG 1 cut(s) 469
SaqAI TTAA 3 cut(s) 11, 72, 312
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 253, 439
Sau96I GGNCC 3 cut(s) 258, 469, 536
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 3 cut(s) 261, 262, 463
SduI GDGCHC 1 cut(s) 458
SetI ASST 3 cut(s) 118, 483, 579
SfaNI GCATC 2 cut(s) 583, 640
Sfr274I CTCGAG 1 cut(s) 443
SinI GGWCC 2 cut(s) 469, 536
SlaI CTCGAG 1 cut(s) 443
SmaI CCCGGG 1 cut(s) 262
SmiMI CAYNNNNRTG 2 cut(s) 399, 401
SmlI CTYRAG 2 cut(s) 443, 686
SmoI CTYRAG 2 cut(s) 443, 686
Sse9I AATT 5 cut(s) 18, 40, 69, 235, 290
SsiI CCGC 1 cut(s) 245
StyD4I CCNGG 3 cut(s) 259, 260, 461
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 473, 506
TaqI TCGA 2 cut(s) 186, 444
TasI AATT 5 cut(s) 18, 40, 69, 235, 290
TfiI GAWTC 3 cut(s) 168, 344, 682
Tru1I TTAA 3 cut(s) 11, 72, 312
Tru9I TTAA 3 cut(s) 11, 72, 312
TscAI CASTG 2 cut(s) 184, 275
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 2 cut(s) 357, 659
TspMI CCCGGG 1 cut(s) 260
TspRI CASTG 2 cut(s) 184, 275
VpaK11BI GGWCC 2 cut(s) 469, 536
VspI ATTAAT 1 cut(s) 72
XapI RAATTY 1 cut(s) 290
XhoI CTCGAG 1 cut(s) 443
XmaI CCCGGG 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.