FvH4_2g40840

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013035
Physical Location & Seq
Forward (+)
29023332 .. 29028615
5284 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40840.t1

Sequence Viewer

Length: 708 bp
ATGGCTCGATTAATCCGAATTGCTCAAACTAGGCTTCGGAATTGTAGTTCATGTTCACCCAAAACCCTAATCAACAGGCATCCAAATCCTCCTCTGCTGCGATGGCACAGCATGCCCTACACTTCTGAGGCACTTCCCACATCGCCCTTGACTTCCAACATCCTTAGAATCCTCCGCACAGAGATCGAGTACCAGTCCGACTCTGCTCCTCCTCATCAGCCTCCAACAAAGTTCAATTCTTTTGCGGTGGAAGATCGGCCCGGCGAGCAGTGGATTACAATGAGAGGCAAATTTGGAGATAGTGAAGACATCAAGATTGAAGTTACTATGTTTGATGGGTATGAATCGGTTCCCAAGACCGGAGATGAGAGCTCCGGGGAAGATTTGCGTCTTCACATTAGTGTGCTTGTTGATATTTCCAAGGGTGATGGCTCCAATGATCTCGAGTTCCTTTGCTCTGCCTGGCCGGACAGTTTGGAGATTCAGAAAGTTTATGTTCTTCACCGTGGTAGAATGCCGGCTAAGCCTTATTTGGGACCTGATTTCAGGGATGTGAATGAGGAGATTCAAAAGAAGCTTCGTGGTTATTTAGAAGCAAGAGGAGTAAATGATGAGCTTTCTTTGTTCTTGCATCAGTATATGATGAACAAGGATAGAATAGAACTCATCCGATGGTTGGGGAATCTCAAGTTGGCTGTGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

236

Amino Acids

26.97

Weight (kDa)

6.33

Isoelectric Point (pI)

59.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 60 - 230 1.2e-24 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31930
fragaria_vesca FvH4_2g40840 FvH4_2g40840
malus_domestica MD15G1037100.v1.1
prunus_persica Prupe.1G391100_v2.0.a1 Prupe.1G391100_v2.0.a1
pyrus_communis pycom08g04940 pycom15g03430
rosa_chinensis RchiOBHm_Chr6g0299721
rosa_laevigata RLG00000011393
rosa_roxburghii Rroxscaffold_7G00168410
rosa_rugosa Rorug06G0291800 Rorug06G0291900
rosa_samantha Rh6AG402700 Rh6BG411300 Rh6CG417300 Rh6DG404200
rosa_wichuraiana Rw6G035250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 175, 245
AcoI YGGCCR 1 cut(s) 464
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 3 cut(s) 359, 533, 676
AgsI TTSAA 3 cut(s) 235, 320, 569
AjnI CCWGG 1 cut(s) 461
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
AleI CACNNNNGTG 1 cut(s) 399
AloI GAACNNNNNNTCC 2 cut(s) 31, 63
AluBI AGCT 3 cut(s) 372, 577, 616
AluI AGCT 3 cut(s) 372, 577, 616
Alw21I GWGCWC 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 2 cut(s) 257, 464
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 290
AseI ATTAAT 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 2 cut(s) 258, 536
AsuC2I CCSGG 2 cut(s) 261, 376
AsuHPI GGTGA 3 cut(s) 48, 437, 494
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 1 cut(s) 536
BanII GRGCYC 1 cut(s) 374
BbsI GAAGAC 2 cut(s) 312, 383
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 84
BccI CCATC 4 cut(s) 96, 329, 422, 666
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 463
BcnI CCSGG 2 cut(s) 261, 376
BfaI CTAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 3 cut(s) 261, 376, 463
Bme18I GGWCC 1 cut(s) 536
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 258, 536
BmiI GGNNCC 3 cut(s) 351, 433, 537
BmrFI CCNGG 3 cut(s) 261, 376, 463
BmsI GCATC 2 cut(s) 88, 640
BpiI GAAGAC 2 cut(s) 312, 383
Bpu1102I GCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 2 cut(s) 261, 376
BsaJI CCNNGG 3 cut(s) 375, 420, 505
BsaWI WCCGGW 1 cut(s) 359
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 533, 676
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 463
BseDI CCNNGG 3 cut(s) 375, 420, 505
BseGI GGATG 4 cut(s) 79, 159, 556, 666
BseLI CCNNNNNNNGG 3 cut(s) 359, 533, 676
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 5 cut(s) 81, 198, 201, 575, 615
BseXI GCAGC 1 cut(s) 84
BshFI GGCC 2 cut(s) 259, 466
BsiHKAI GWGCWC 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 5 cut(s) 261, 360, 375, 467, 518
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 3 cut(s) 359, 533, 676
BsmFI GGGAC 1 cut(s) 549
BsmI GAATGC 1 cut(s) 519
BsnI GGCC 2 cut(s) 259, 466
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 3 cut(s) 183, 253, 439
Bsp1720I GCTNAGC 1 cut(s) 522
BspACI CCGC 2 cut(s) 175, 245
BspANI GGCC 2 cut(s) 259, 466
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 3 cut(s) 351, 433, 537
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 3 cut(s) 375, 420, 505
BssMI GATC 3 cut(s) 183, 253, 439
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 2 cut(s) 473, 506
BstAPI GCANNNNNTGC 1 cut(s) 112
BstC8I GCNNGC 3 cut(s) 113, 266, 519
BstDEI CTNAG 3 cut(s) 126, 164, 522
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 4 cut(s) 79, 159, 556, 666
BstKTI GATC 3 cut(s) 186, 256, 442
BstMBI GATC 3 cut(s) 183, 253, 439
BstMWI GCNNNNNNNGC 4 cut(s) 103, 112, 265, 523
BstNI CCWGG 1 cut(s) 463
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 3 cut(s) 259, 374, 461
BstV1I GCAGC 1 cut(s) 84
BstV2I GAAGAC 2 cut(s) 312, 383
BsuRI GGCC 2 cut(s) 259, 466
BtgI CCRYGG 1 cut(s) 505
BtgZI GCGATG 2 cut(s) 115, 126
BtsCI GGATG 4 cut(s) 79, 159, 556, 666
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 3 cut(s) 113, 266, 519
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 2 cut(s) 258, 536
CseI GACGC 1 cut(s) 377
Csp6I GTAC 1 cut(s) 190
CviAII CATG 2 cut(s) 51, 112
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 126, 164, 522
DpnI GATC 3 cut(s) 185, 255, 441
DpnII GATC 3 cut(s) 183, 253, 439
EaeI YGGCCR 1 cut(s) 464
Ecl136II GAGCTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 536
Eco53kI GAGCTC 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 2 cut(s) 54, 115
FaiI YATR 7 cut(s) 52, 113, 329, 342, 495, 639, 641
FaqI GGGAC 1 cut(s) 549
FatI CATG 2 cut(s) 50, 111
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 4 cut(s) 66, 146, 563, 653
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 259, 466
HapII CCGG 5 cut(s) 261, 360, 375, 467, 518
HgaI GACGC 1 cut(s) 377
Hin1II CATG 2 cut(s) 54, 115
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 6 cut(s) 168, 200, 344, 481, 565, 682
HpaII CCGG 5 cut(s) 261, 360, 375, 467, 518
HphI GGTGA 3 cut(s) 48, 437, 494
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 6 cut(s) 17, 39, 127, 199, 486, 671
Hpy188III TCNNGA 2 cut(s) 313, 443
Hpy8I GTNNAC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 473, 506
HpyCH4V TGCA 1 cut(s) 631
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 112, 265, 523
HpyF3I CTNAG 3 cut(s) 126, 164, 522
Hsp92II CATG 2 cut(s) 54, 115
KroI GCCGGC 1 cut(s) 517
KroNI GCCGGC 1 cut(s) 519
Kzo9I GATC 3 cut(s) 183, 253, 439
LmnI GCTCC 3 cut(s) 211, 377, 437
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 2 cut(s) 88, 640
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 322
MalI GATC 3 cut(s) 185, 255, 441
MboI GATC 3 cut(s) 183, 253, 439
MboII GAAGA 5 cut(s) 263, 317, 383, 392, 491
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 4 cut(s) 18, 40, 235, 290
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 3 cut(s) 180, 222, 248
MroNI GCCGGC 1 cut(s) 517
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 2 cut(s) 399, 401
MspI CCGG 5 cut(s) 261, 360, 375, 467, 518
MspR9I CCNGG 3 cut(s) 261, 376, 463
Mva1269I GAATGC 1 cut(s) 519
MvaI CCWGG 1 cut(s) 463
MwoI GCNNNNNNNGC 4 cut(s) 103, 112, 265, 523
NaeI GCCGGC 1 cut(s) 519
NciI CCSGG 2 cut(s) 261, 376
NdeII GATC 3 cut(s) 183, 253, 439
NgoMIV GCCGGC 1 cut(s) 517
NlaIII CATG 2 cut(s) 54, 115
NlaIV GGNNCC 3 cut(s) 351, 433, 537
NspI RCATGY 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 399
PaeI GCATGC 1 cut(s) 115
PaeR7I CTCGAG 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PctI GAATGC 1 cut(s) 519
PdiI GCCGGC 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 5 cut(s) 168, 344, 481, 565, 682
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PpuMI RGGWCCY 1 cut(s) 536
PshBI ATTAAT 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 374
Psp5II RGGWCCY 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 461
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 3 cut(s) 351, 433, 537
PspPI GGNCC 2 cut(s) 258, 536
PspPPI RGGWCCY 1 cut(s) 536
PsrI GAACNNNNNNTAC 2 cut(s) 37, 69
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 399, 401
SacI GAGCTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 3 cut(s) 183, 253, 439
Sau96I GGNCC 2 cut(s) 258, 536
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 3 cut(s) 261, 376, 463
SduI GDGCHC 1 cut(s) 374
SetI ASST 4 cut(s) 374, 541, 579, 618
SfaNI GCATC 2 cut(s) 88, 640
Sfr274I CTCGAG 1 cut(s) 443
SinI GGWCC 1 cut(s) 536
SlaI CTCGAG 1 cut(s) 443
SmiMI CAYNNNNRTG 2 cut(s) 399, 401
SmlI CTYRAG 2 cut(s) 443, 686
SmoI CTYRAG 2 cut(s) 443, 686
SphI GCATGC 1 cut(s) 115
Sse9I AATT 4 cut(s) 18, 40, 235, 290
SsiI CCGC 2 cut(s) 175, 245
SspMI CTAG 1 cut(s) 30
SstI GAGCTC 1 cut(s) 374
StyD4I CCNGG 3 cut(s) 259, 374, 461
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 473, 506
TaqI TCGA 3 cut(s) 7, 186, 444
TasI AATT 4 cut(s) 18, 40, 235, 290
TfiI GAWTC 5 cut(s) 168, 344, 481, 565, 682
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 275
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 39, 357, 659
TspRI CASTG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 536
VspI ATTAAT 1 cut(s) 11
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.