Rorug06G0291900

Mitochondrial glycoprotein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
44412502 .. 44412946
445 bp
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UTR
Exon/CDS
Intron
Rorug06G0291900.1

Sequence Viewer

Length: 285 bp
ATGCAGTTTCAAGCTATCTCAGGGTTCGCTCTATGGCAGAGGATGGTAAAAAGAAGCAACCAACAACGTACTGTAACAAAAGCCTCAAAGAATCCACAGCCGTCAGCTCCTTCACCATCTCCTCCTCCTCTTTCTCCGAAGTTTTCAGACGTGTTTGCATTCAGCTGGCCGGCACCTGAGAGAATCAACGGCAGGCTGGCAATGGTGGGATTCATTGCGGCTCTAGCTGTCGAACTCTCCAAGGGGCAAGATGTGTTTGCTCAGATATCCAACGGTGCTAGCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.18

Weight (kDa)

11.0

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013035)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AciI CCGC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 167
AfaI GTAC 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 11
AjiI CACGTC 1 cut(s) 151
AluBI AGCT 5 cut(s) 14, 107, 165, 227, 282
AluI AGCT 5 cut(s) 14, 107, 165, 227, 282
AoxI GGCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 105
AsuNHI GCTAGC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 172
BccI CCATC 2 cut(s) 37, 124
BceAI ACGGC 2 cut(s) 85, 205
BfaI CTAG 2 cut(s) 224, 279
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 174
BmtI GCTAGC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 169
Bse3DI GCAATG 2 cut(s) 207, 213
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 48
BseMI GCAATG 2 cut(s) 207, 213
BseMII CTCAG 3 cut(s) 33, 168, 275
BseRI GAGGAG 3 cut(s) 111, 114, 117
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 170
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 1 cut(s) 169
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 3 cut(s) 32, 169, 274
BspLI GGNNCC 1 cut(s) 174
BspOI GCTAGC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 207, 213
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 73, 275
BstC8I GCNNGC 5 cut(s) 167, 171, 194, 198, 280
BstDEI CTNAG 3 cut(s) 19, 177, 261
BstF5I GGATG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 169
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 5 cut(s) 167, 171, 194, 198, 280
Cfr10I RCCGGY 1 cut(s) 169
Csp6I GTAC 1 cut(s) 69
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 3 cut(s) 19, 177, 261
EaeI YGGCCR 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 240
Eco32I GATATC 1 cut(s) 267
EcoRV GATATC 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaiI YATR 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 224, 279
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 169
HapII CCGG 1 cut(s) 170
HinfI GANTC 3 cut(s) 91, 183, 210
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 105
Hpy188I TCNGA 3 cut(s) 138, 148, 264
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 2 cut(s) 73, 275
HpyCH4IV ACGT 2 cut(s) 67, 150
HpyCH4V TGCA 2 cut(s) 4, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 3 cut(s) 19, 177, 261
HpySE526I ACGT 2 cut(s) 67, 150
KroI GCCGGC 1 cut(s) 169
KroNI GCCGGC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 6 cut(s) 6, 151, 178, 182, 183, 189
MaeI CTAG 2 cut(s) 224, 279
MaeII ACGT 2 cut(s) 67, 150
MaeIII GTNAC 1 cut(s) 73
MnlI CCTC 5 cut(s) 33, 94, 132, 135, 138
MroNI GCCGGC 1 cut(s) 169
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 224
NaeI GCCGGC 1 cut(s) 171
NgoMIV GCCGGC 1 cut(s) 169
NheI GCTAGC 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 174
PctI GAATGC 1 cut(s) 158
PdiI GCCGGC 1 cut(s) 171
PfeI GAWTC 3 cut(s) 91, 183, 210
PkrI GCNGC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 165
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SatI GCNGC 1 cut(s) 219
SetI ASST 8 cut(s) 16, 70, 109, 153, 167, 178, 229, 284
SsiI CCGC 1 cut(s) 218
SspMI CTAG 2 cut(s) 224, 279
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 73, 275
TaiI ACGT 2 cut(s) 70, 153
TaqI TCGA 1 cut(s) 231
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 3 cut(s) 91, 183, 210
TspDTI ATGAA 1 cut(s) 202
XspI CTAG 2 cut(s) 224, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.