AT4G32090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011679
Physical Location & Seq
Reverse (-)
15509990 .. 15510820
831 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32090.1

Sequence Viewer

Length: 375 bp
ATGGCGTTTGCTCTTAAATGTTTTGTTGTTGTTCTTCTTCTCTCTATGGTCTCTCATGGACTGTGCCTTTGCACTTTTGGCAAGATCCAGATCGGAGCGGTGAGGACAGGAAGAGAAATCGGCGGGCAGCCGGAGTGGAAAGTGACGGTAATCAACACGTGCAATTGTTTTCAGAAGCACGTGACTCTATCTTGCGGAGGGTTTGCTCCTGCGAAGCCTGTCAAGCCATTGCTGCTTCAGCCACAAGGAAACACGTGTCTTATGATTAAAGGAGCAGCTTTGCCAGCTGGCGCCACCGCTCAGTTCACATACGCCGGCCAGCCTTACATCTTCAGACCCGTTGGTTCCAAGGTCGACCCAAGTTGCACGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.14

Weight (kDa)

9.3

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 28 - 107 3.4e-20 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011679)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32090
fragaria_vesca FvH4_2g28680
malus_domestica MD15G1128900.v1.1
prunus_persica Prupe.1G484200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0297451
rosa_laevigata RLG00000011597
rosa_multiflora Rmu_sc0001572.1_g000018 Rmu_sc0004323.1_g000007
rosa_roxburghii Rroxscaffold_7G00170470 Rroxscaffold_7G00170490
rosa_rugosa Rorug06G0272200 Rorug06G0272300
rosa_samantha Rh6AG383300 Rh6AG383400 Rh6CG396800 Rh6CG397200 Rh6DG384100
rosa_wichuraiana Rw6G033380 Rw6G033390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AccBSI CCGCTC 2 cut(s) 98, 299
AccI GTMKAC 1 cut(s) 354
AciI CCGC 4 cut(s) 98, 123, 195, 297
AclWI GGATC 1 cut(s) 79
AcoI YGGCCR 1 cut(s) 316
AcuI CTGAAG 2 cut(s) 221, 316
AcvI CACGTG 3 cut(s) 159, 181, 255
AcyI GRCGYC 1 cut(s) 291
AflIII ACRYGT 3 cut(s) 156, 252, 254
AluBI AGCT 2 cut(s) 278, 287
AluI AGCT 2 cut(s) 278, 287
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 1 cut(s) 79
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 3 cut(s) 127, 232, 275
ArsI GACNNNNNNTTYG 2 cut(s) 51, 83
AspLEI GCGC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 112
BanI GGYRCC 1 cut(s) 290
BbrPI CACGTG 3 cut(s) 159, 181, 255
BbvI GCAGC 3 cut(s) 139, 219, 287
BcoDI GTCTC 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 294
BisI GCNGC 3 cut(s) 128, 233, 276
BlsI GCNGC 3 cut(s) 129, 234, 277
BmiI GGNNCC 2 cut(s) 292, 346
BsaAI YACGTR 3 cut(s) 159, 181, 255
BsaBI GATNNNNATC 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 348
Bse118I RCCGGY 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 348
BseJI GATNNNNATC 1 cut(s) 89
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 139, 219, 287
BshFI GGCC 1 cut(s) 318
BshNI GGYRCC 1 cut(s) 290
BsiSI CCGG 2 cut(s) 131, 315
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 318
Bso31I GGTCTC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 84, 90
BspACI CCGC 4 cut(s) 98, 123, 195, 297
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 292, 346
BspPI GGATC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 55
BsrBI CCGCTC 2 cut(s) 98, 299
BsrDI GCAATG 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 2 cut(s) 84, 90
BssNI GRCGYC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 63, 148
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 291
BstBAI YACGTR 3 cut(s) 159, 181, 255
BstC8I GCNNGC 5 cut(s) 125, 285, 289, 316, 320
BstDEI CTNAG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 2 cut(s) 87, 93
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 84, 90
BstMWI GCNNNNNNNGC 5 cut(s) 78, 223, 232, 238, 284
BstV1I GCAGC 3 cut(s) 139, 219, 287
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 1 cut(s) 318
Cac8I GCNNGC 5 cut(s) 125, 285, 289, 316, 320
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 314
CviAII CATG 1 cut(s) 56
CviJI RGCY 8 cut(s) 130, 217, 226, 241, 278, 287, 318, 322
CviKI_1 RGCY 8 cut(s) 130, 217, 226, 241, 278, 287, 318, 322
DdeI CTNAG 1 cut(s) 300
DinI GGCGCC 1 cut(s) 292
DpnI GATC 2 cut(s) 86, 92
DpnII GATC 2 cut(s) 84, 90
EaeI YGGCCR 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 221, 316
Eco72I CACGTG 3 cut(s) 159, 181, 255
EcoT14I CCWWGG 1 cut(s) 348
EgeI GGCGCC 1 cut(s) 292
EheI GGCGCC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 59
FaiI YATR 4 cut(s) 47, 57, 263, 310
FatI CATG 1 cut(s) 55
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 128, 233, 276
Fsp4HI GCNGC 3 cut(s) 128, 233, 276
GlaI GCGC 1 cut(s) 292
GluI GCNGC 3 cut(s) 128, 233, 276
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 1 cut(s) 318
HapII CCGG 2 cut(s) 131, 315
HhaI GCGC 1 cut(s) 293
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 1 cut(s) 184
HpaII CCGG 2 cut(s) 131, 315
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 306, 355
Hpy188I TCNGA 3 cut(s) 95, 174, 335
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 2 cut(s) 306, 355
HpyCH4III ACNGT 2 cut(s) 63, 148
HpyCH4IV ACGT 3 cut(s) 158, 180, 254
HpyCH4V TGCA 3 cut(s) 72, 162, 366
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 223, 232, 238, 284
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 3 cut(s) 158, 180, 254
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 1 cut(s) 291
KasI GGCGCC 1 cut(s) 290
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
Kzo9I GATC 2 cut(s) 84, 90
LmnI GCTCC 3 cut(s) 95, 211, 272
LpnPI CCDG 9 cut(s) 93, 101, 144, 222, 231, 273, 297, 328, 332
Lsp1109I GCAGC 3 cut(s) 139, 219, 287
MaeII ACGT 3 cut(s) 158, 180, 254
MaeIII GTNAC 2 cut(s) 142, 181
MalI GATC 2 cut(s) 86, 92
MbiI CCGCTC 2 cut(s) 98, 299
MboI GATC 2 cut(s) 84, 90
MboII GAAGA 4 cut(s) 26, 29, 123, 322
MfeI CAATTG 1 cut(s) 163
MflI RGATCY 1 cut(s) 84
MluCI AATT 2 cut(s) 163, 370
Mly113I GGCGCC 1 cut(s) 291
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 2 cut(s) 96, 191
MroNI GCCGGC 1 cut(s) 314
MseI TTAA 2 cut(s) 15, 267
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 2 cut(s) 131, 315
MunI CAATTG 1 cut(s) 163
MwoI GCNNNNNNNGC 5 cut(s) 78, 223, 232, 238, 284
NaeI GCCGGC 1 cut(s) 316
NarI GGCGCC 1 cut(s) 291
NdeII GATC 2 cut(s) 84, 90
NgoMIV GCCGGC 1 cut(s) 314
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 2 cut(s) 292, 346
NmuCI GTSAC 2 cut(s) 142, 181
PdiI GCCGGC 1 cut(s) 316
PkrI GCNGC 3 cut(s) 129, 234, 277
PleI GAGTC 1 cut(s) 178
PluTI GGCGCC 1 cut(s) 294
PmaCI CACGTG 3 cut(s) 159, 181, 255
PmlI CACGTG 3 cut(s) 159, 181, 255
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 3 cut(s) 159, 181, 255
PspCI CACGTG 3 cut(s) 159, 181, 255
PspN4I GGNNCC 2 cut(s) 292, 346
PsuI RGATCY 1 cut(s) 84
PvuII CAGCTG 1 cut(s) 287
SalI GTCGAC 1 cut(s) 353
SaqAI TTAA 2 cut(s) 15, 267
SatI GCNGC 3 cut(s) 128, 233, 276
Sau3AI GATC 2 cut(s) 84, 90
SchI GAGTC 1 cut(s) 178
SetI ASST 6 cut(s) 161, 183, 257, 280, 289, 354
SfoI GGCGCC 1 cut(s) 292
Sse9I AATT 2 cut(s) 163, 370
SsiI CCGC 4 cut(s) 98, 123, 195, 297
SspDI GGCGCC 1 cut(s) 290
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 63, 148
TaiI ACGT 3 cut(s) 161, 183, 257
TaqI TCGA 1 cut(s) 354
TasI AATT 2 cut(s) 163, 370
Tru1I TTAA 2 cut(s) 15, 267
Tru9I TTAA 2 cut(s) 15, 267
TseFI GTSAC 2 cut(s) 142, 181
TseI GCWGC 3 cut(s) 127, 232, 275
Tsp45I GTSAC 2 cut(s) 142, 181
XmiI GTMKAC 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.