RchiOBHm_Chr6g0297451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011679
Physical Location & Seq
Reverse (-)
59152280 .. 59152762
483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26697

Sequence Viewer

Length: 483 bp
ATGTTGGGCTCCAGTACTCCTAAGCAAGTGTTTGAGAAATTTTCATGGACTTTGGGCGGGCGGTGGTTTAATTGTTTGTGTGCGAAAACCAAAATAATTAGTTTAGTAACCCATGAGAATCCGGAGGCATTTTTCATTCAAATGGTTTCATATATTTCATTTATTAACGTTGCAGGGTATTGTGCTTGCTTGGACAAGATCAACATTTTAACTGCCAGAAGTGGAAGAGAGGTTCAAGGCCAACCCGAATGGAACGTAACTGTGACCAACAACTGCCCATGCACTCAAAAGCTCATAAAACTGACGTGCCAGGGGTTTCGGACTGCGGAACCTGTGAGTCCTTCAATCCTATCCAAAGATGGCGATACGTGCCTCCTCATCAATGGCAATGAACTGCCGGCGGGTAGTTCTGTGTATTTCTCTTATGCTTGGGATCCTCCTATCGTTTTCTGGCCTAAGGATTCAGTTGGTGTAGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.66

Weight (kDa)

7.47

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 65 - 146 4.8e-24 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011679)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32090
fragaria_vesca FvH4_2g28680
malus_domestica MD15G1128900.v1.1
prunus_persica Prupe.1G484200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0297451
rosa_laevigata RLG00000011597
rosa_multiflora Rmu_sc0001572.1_g000018 Rmu_sc0004323.1_g000007
rosa_roxburghii Rroxscaffold_7G00170470 Rroxscaffold_7G00170490
rosa_rugosa Rorug06G0272200 Rorug06G0272300
rosa_samantha Rh6AG383300 Rh6AG383400 Rh6CG396800 Rh6CG397200 Rh6DG384100
rosa_wichuraiana Rw6G033380 Rw6G033390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 4 cut(s) 57, 61, 326, 401
AclI AACGTT 1 cut(s) 168
AclWI GGATC 2 cut(s) 428, 441
AcsI RAATTY 1 cut(s) 38
AfaI GTAC 1 cut(s) 16
AgsI TTSAA 3 cut(s) 140, 236, 345
AjiI CACGTC 1 cut(s) 306
AjnI CCWGG 1 cut(s) 309
AloI GAACNNNNNNTCC 2 cut(s) 216, 248
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
AlwI GGATC 2 cut(s) 428, 441
Aor13HI TCCGGA 1 cut(s) 121
AoxI GGCC 2 cut(s) 238, 452
ApoI RAATTY 1 cut(s) 38
AxyI CCTNAGG 1 cut(s) 456
BamHI GGATCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 11
BccI CCATC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 311
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 306
BmiI GGNNCC 3 cut(s) 10, 330, 435
BmrFI CCNGG 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 121
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 1 cut(s) 12
Bse21I CCTNAGG 1 cut(s) 456
Bse3DI GCAATG 1 cut(s) 394
BseAI TCCGGA 1 cut(s) 121
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 394
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 365
BshFI GGCC 2 cut(s) 240, 454
BsiSI CCGG 2 cut(s) 122, 398
BsnI GGCC 2 cut(s) 240, 454
Bsp1286I GDGCHC 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 2 cut(s) 198, 433
BspACI CCGC 4 cut(s) 57, 61, 326, 401
BspANI GGCC 2 cut(s) 240, 454
BspEI TCCGGA 1 cut(s) 121
BspLI GGNNCC 3 cut(s) 10, 330, 435
BspPI GGATC 2 cut(s) 428, 441
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 397
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 198, 433
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 220
BstBAI YACGTR 1 cut(s) 369
BstC8I GCNNGC 3 cut(s) 59, 187, 399
BstDEI CTNAG 2 cut(s) 21, 456
BstKTI GATC 2 cut(s) 201, 436
BstMBI GATC 2 cut(s) 198, 433
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 2 cut(s) 240, 454
BtrI CACGTC 1 cut(s) 306
Cac8I GCNNGC 3 cut(s) 59, 187, 399
Cfr10I RCCGGY 1 cut(s) 397
Csp6I GTAC 1 cut(s) 15
CviAII CATG 3 cut(s) 45, 113, 279
CviJI RGCY 4 cut(s) 9, 240, 292, 454
CviKI_1 RGCY 4 cut(s) 9, 240, 292, 454
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 2 cut(s) 21, 456
DpnI GATC 2 cut(s) 200, 435
DpnII GATC 2 cut(s) 198, 433
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 11
Eco81I CCTNAGG 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 3 cut(s) 48, 116, 282
FaiI YATR 7 cut(s) 46, 114, 151, 153, 280, 296, 426
FatI CATG 3 cut(s) 44, 112, 278
FauI CCCGC 2 cut(s) 50, 394
FriOI GRGCYC 1 cut(s) 11
HaeIII GGCC 2 cut(s) 240, 454
HapII CCGG 2 cut(s) 122, 398
Hin1II CATG 3 cut(s) 48, 116, 282
HinfI GANTC 3 cut(s) 118, 337, 461
HpaII CCGG 2 cut(s) 122, 398
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 351
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 4 cut(s) 168, 255, 305, 368
HpyCH4V TGCA 2 cut(s) 173, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 2 cut(s) 21, 456
HpySE526I ACGT 4 cut(s) 168, 255, 305, 368
Hsp92II CATG 3 cut(s) 48, 116, 282
Kpn2I TCCGGA 1 cut(s) 121
KroI GCCGGC 1 cut(s) 397
KroNI GCCGGC 1 cut(s) 399
Kzo9I GATC 2 cut(s) 198, 433
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 9 cut(s) 25, 135, 159, 229, 296, 323, 345, 411, 436
MaeII ACGT 4 cut(s) 168, 255, 305, 368
MaeIII GTNAC 3 cut(s) 106, 256, 262
MalI GATC 2 cut(s) 200, 435
MboI GATC 2 cut(s) 198, 433
MboII GAAGA 1 cut(s) 237
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 38, 70, 96
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 5 cut(s) 118, 223, 383, 386, 447
MroI TCCGGA 1 cut(s) 121
MroNI GCCGGC 1 cut(s) 397
MseI TTAA 3 cut(s) 69, 165, 209
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 2 cut(s) 122, 398
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 369
NaeI GCCGGC 1 cut(s) 399
NdeII GATC 2 cut(s) 198, 433
NgoMIV GCCGGC 1 cut(s) 397
NlaIII CATG 3 cut(s) 48, 116, 282
NlaIV GGNNCC 3 cut(s) 10, 330, 435
NmuCI GTSAC 1 cut(s) 262
PdiI GCCGGC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 118, 461
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Ppu21I YACGTR 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 10, 330, 435
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 3 cut(s) 69, 165, 209
Sau3AI GATC 2 cut(s) 198, 433
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 11
SetI ASST 8 cut(s) 171, 234, 258, 294, 308, 334, 371, 478
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 3 cut(s) 38, 70, 96
SsiI CCGC 4 cut(s) 57, 61, 326, 401
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 4 cut(s) 171, 258, 308, 371
TasI AATT 3 cut(s) 38, 70, 96
TatI WGTACW 1 cut(s) 14
TfiI GAWTC 2 cut(s) 118, 461
Tru1I TTAA 3 cut(s) 69, 165, 209
Tru9I TTAA 3 cut(s) 69, 165, 209
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 5 cut(s) 33, 124, 138, 147, 405
XapI RAATTY 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.