Rh6AG383400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011679
Physical Location & Seq
Reverse (-)
58285422 .. 58287397
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG383400.1

Sequence Viewer

Length: 342 bp
ATGGCCTCGACCTTGGACATAAATGGGTTATGCGTTATTTGCACCAATAAGGACATTCAGATCGTTACGACACGGAGTGGGAAGGTGGTTCAAGGCAAACCCGAATGGAACGTGGTGGTGACTAACACCTGCAAGTGCTCTCAAGCCATGATTAAACTGAGTTGCAAGGGATTTCAGACTGTAGAGCCGGTCAGTTCTTCGATCCTATCGGAGATAGGTGTTGACACATATAAACTCATCAACGGCGATAGCTTGGCTCCTGGTGCTTTTGTCAAGTTCTCCTATGCTTGGGATTCTCCTTCCAGTATATTGCCTGCTGATTCTGTTTCTATTCCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.02

Weight (kDa)

6.1

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 16 - 102 3.7e-25 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011679)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32090
fragaria_vesca FvH4_2g28680
malus_domestica MD15G1128900.v1.1
prunus_persica Prupe.1G484200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0297451
rosa_laevigata RLG00000011597
rosa_multiflora Rmu_sc0001572.1_g000018 Rmu_sc0004323.1_g000007
rosa_roxburghii Rroxscaffold_7G00170470 Rroxscaffold_7G00170490
rosa_rugosa Rorug06G0272200 Rorug06G0272300
rosa_samantha Rh6AG383300 Rh6AG383400 Rh6CG396800 Rh6CG397200 Rh6DG384100
rosa_wichuraiana Rw6G033380 Rw6G033390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 137
AclWI GGATC 1 cut(s) 196
AdeI CACNNNGTG 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 1 cut(s) 252
AluI AGCT 1 cut(s) 252
Alw21I GWGCWC 1 cut(s) 140
AlwI GGATC 1 cut(s) 196
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 303
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 288
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 60, 201
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 60, 201
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 158
BstKTI GATC 2 cut(s) 63, 204
BstMBI GATC 2 cut(s) 60, 201
BstMWI GCNNNNNNNGC 2 cut(s) 39, 263
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 180
BsuRI GGCC 1 cut(s) 5
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 187
CviAII CATG 1 cut(s) 148
CviJI RGCY 5 cut(s) 5, 146, 187, 252, 257
CviKI_1 RGCY 5 cut(s) 5, 146, 187, 252, 257
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 62, 203
DpnII GATC 2 cut(s) 60, 201
DraIII CACNNNGTG 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 1 cut(s) 151
FaiI YATR 7 cut(s) 20, 31, 149, 229, 231, 285, 308
FatI CATG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 188
Hin1II CATG 1 cut(s) 151
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 2 cut(s) 293, 320
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 60, 177, 211
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 76, 309
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 42, 132, 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 263
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 151
Kzo9I GATC 2 cut(s) 60, 201
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 6 cut(s) 142, 201, 246, 273, 316, 327
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 64, 118
MalI GATC 2 cut(s) 62, 203
MboI GATC 2 cut(s) 60, 201
MboII GAAGA 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 140
MnlI CCTC 1 cut(s) 16
MseI TTAA 1 cut(s) 153
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 39, 263
NdeII GATC 2 cut(s) 60, 201
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 118
PaqCI CACCTGC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 293, 320
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 2 cut(s) 60, 201
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 140
SetI ASST 6 cut(s) 14, 87, 114, 131, 220, 254
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 8, 200
TfiI GAWTC 2 cut(s) 293, 320
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspGWI ACGGA 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.