FvH4_2g28680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011679
Physical Location & Seq
Reverse (-)
22415476 .. 22416027
552 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28680.t1

Sequence Viewer

Length: 378 bp
ATGGCCGCCATTGCCAAGTCTCTTATTGTCATCATTGCTCTCTTCAGTCTCATTAGCCAAGGATTATGCATTACTTGCACTAATAACGACATTAAGATCGAAACTACAAAAAGTGGTAAGGTGGTTCAAGGCAAACCTGAATGGAATGTGGTGGTGACCAATACCTGCAAGTGTGCTCAATTCAATATCAAAGTGACCTGCAAGGCATTTCAGACTGTAGAGCCAGTGAGTTCTGATATCCTATCGCAGCAAGATATCATCACCTATCTGCTCATCAAGGGCGCCCAATTATCATCTGGTGCTACTGTCAAGTTTTCCTATGCTTGGGATTTCGCTTTCCGCATAAATCCTGCTAGCTCTTTTACTGTTCCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.56

Weight (kDa)

8.8

Isoelectric Point (pI)

26.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 28 - 119 4.3e-27 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011679)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32090
fragaria_vesca FvH4_2g28680
malus_domestica MD15G1128900.v1.1
prunus_persica Prupe.1G484200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0297451
rosa_laevigata RLG00000011597
rosa_multiflora Rmu_sc0001572.1_g000018 Rmu_sc0004323.1_g000007
rosa_roxburghii Rroxscaffold_7G00170470 Rroxscaffold_7G00170490
rosa_rugosa Rorug06G0272200 Rorug06G0272300
rosa_samantha Rh6AG383300 Rh6AG383400 Rh6CG396800 Rh6CG397200 Rh6DG384100
rosa_wichuraiana Rw6G033380 Rw6G033390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 173, 206
AccB1I GGYRCC 1 cut(s) 281
AciI CCGC 2 cut(s) 6, 340
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 2 cut(s) 128, 184
AluBI AGCT 1 cut(s) 357
AluI AGCT 1 cut(s) 357
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 24, 53
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 247
AspLEI GCGC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 166, 253
AsuNHI GCTAGC 1 cut(s) 353
BanI GGYRCC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 24, 53
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 285
BfuAI ACCTGC 2 cut(s) 173, 206
BisI GCNGC 2 cut(s) 6, 248
BlsI GCNGC 2 cut(s) 7, 249
BmiI GGNNCC 1 cut(s) 283
BmtI GCTAGC 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 224
Bse3DI GCAATG 2 cut(s) 9, 33
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 2 cut(s) 9, 33
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 2 cut(s) 24, 53
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 96
BspACI CCGC 2 cut(s) 6, 340
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 283
BspMI ACCTGC 2 cut(s) 173, 206
BspOI GCTAGC 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 9, 33
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 1 cut(s) 96
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 217, 307, 367
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 355
BstEII GGTNACC 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 2 cut(s) 24, 53
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 2 cut(s) 11, 75
BstPI GGTNACC 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 231
BveI ACCTGC 2 cut(s) 173, 206
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 284
CviJI RGCY 4 cut(s) 5, 57, 223, 357
CviKI_1 RGCY 4 cut(s) 5, 57, 223, 357
DinI GGCGCC 1 cut(s) 283
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 58
Eco32I GATATC 2 cut(s) 238, 256
Eco57I CTGAAG 1 cut(s) 28
Eco91I GGTNACC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 154
EcoRV GATATC 2 cut(s) 238, 256
EcoT14I CCWWGG 1 cut(s) 58
EcoT22I ATGCAT 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 58
FaiI YATR 3 cut(s) 67, 321, 344
Fnu4HI GCNGC 2 cut(s) 6, 248
Fsp4HI GCNGC 2 cut(s) 6, 248
FspBI CTAG 1 cut(s) 354
GlaI GCGC 1 cut(s) 283
GluI GCNGC 2 cut(s) 6, 248
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 282
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HphI GGTGA 2 cut(s) 166, 253
Hpy188I TCNGA 2 cut(s) 213, 235
HpyCH4III ACNGT 3 cut(s) 217, 307, 367
HpyCH4V TGCA 4 cut(s) 69, 78, 168, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 75
Hsp92I GRCGYC 1 cut(s) 282
HspAI GCGC 1 cut(s) 282
KasI GGCGCC 1 cut(s) 281
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 6 cut(s) 150, 178, 211, 237, 282, 363
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 154, 193
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 2 cut(s) 179, 287
Mly113I GGCGCC 1 cut(s) 282
Mph1103I ATGCAT 1 cut(s) 71
MseI TTAA 2 cut(s) 93, 376
MwoI GCNNNNNNNGC 2 cut(s) 11, 75
NarI GGCGCC 1 cut(s) 282
NdeII GATC 1 cut(s) 96
NheI GCTAGC 1 cut(s) 353
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 2 cut(s) 154, 193
NsiI ATGCAT 1 cut(s) 71
PkrI GCNGC 2 cut(s) 7, 249
PluTI GGCGCC 1 cut(s) 285
PspEI GGTNACC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 93, 376
SatI GCNGC 2 cut(s) 6, 248
Sau3AI GATC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 178
SetI ASST 6 cut(s) 123, 139, 167, 200, 266, 359
SfcI CTRYAG 1 cut(s) 216
SfoI GGCGCC 1 cut(s) 283
Sse9I AATT 2 cut(s) 179, 287
SsiI CCGC 2 cut(s) 6, 340
SspDI GGCGCC 1 cut(s) 281
SspMI CTAG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 3 cut(s) 217, 307, 367
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 179, 287
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 93, 376
Tru9I TTAA 2 cut(s) 93, 376
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 2 cut(s) 154, 193
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 2 cut(s) 154, 193
TspRI CASTG 1 cut(s) 231
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XspI CTAG 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.