Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011679

Physical Location & Seq

Genomic Coordinates Forward (+)

10822610 .. 10824246

Gene Structure 1637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011597

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCACCATCGCCAACTCTCTCATTGTCACTGTCCTCTTCAGTCTCATTAGCCATGGGTTATGCGTTACTTGCACCAATAAGGACATTCAGATCGTTACGACACGGAGTGGGAAGGTGGTTCAAGGCAAACCCGAATGGAACGTGGTGGTGACTAACAACTGCAAGTGCTCTCAAGCCATGATTAAACTGAGTTGCAAGGGATTTCAGACTGTAGAGCCGGTCAGTTCTTCGATCCTATCGGAGATAGGTGTTGACACATATCAACTCATCAACGGCGATAGCTTGGCTCCTGGTGCTTTTGTGAAGTTCTCCTATGCTTGGGATTCTCCTTCCATCTCAGTGTTGGAGACGGGAAAGTCGGTCCAAAACAAGCCGGAGTGGAATGTGAAGATCACCAACGGTTGTTCGTGTTCTCTACTGAATGTTAAACTAAGCTGTGATGGATTTAGAACAGTCGAAGACATTGATTCTTCCATTTTGAGTGTTTCTGGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

17.71

Weight (kDa)

6.54

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	27 - 110	3.2e-24	Tapetum determinant 1, C-terminal
TPD1_C	PF24068	113 - 163	3.1e-13	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32090
fragaria_vesca	FvH4_2g28680
malus_domestica	MD15G1128900.v1.1
prunus_persica	Prupe.1G484200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0297451
rosa_laevigata	RLG00000011597
rosa_multiflora	Rmu_sc0001572.1_g000018 Rmu_sc0004323.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170470 Rroxscaffold_7G00170490
rosa_rugosa	Rorug06G0272200 Rorug06G0272300
rosa_samantha	Rh6AG383300 Rh6AG383400 Rh6CG396800 Rh6CG397200 Rh6DG384100
rosa_wichuraiana	Rw6G033380 Rw6G033390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	358
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	285, 438
AluI	AGCT	2 cut(s)	285, 438
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	50, 344
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	2 cut(s)	163, 388
AvaII	GGWCC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	173
BccI	CCATC	3 cut(s)	17, 344, 437
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	50, 344
BfaI	CTAG	1 cut(s)	499
BfmI	CTRYAG	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse118I	RCCGGY	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	182, 354
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	221, 377
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	50, 344
BsmBI	CGTCTC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	93, 234, 393
Bsp19I	CCATGG	1 cut(s)	55
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	183, 353
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	3 cut(s)	93, 234, 393
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	34, 214, 404, 457
Bst6I	CTCTTC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	191, 340, 434
BstDSI	CCRYGG	1 cut(s)	55
BstKTI	GATC	3 cut(s)	96, 237, 396
BstMAI	GTCTC	2 cut(s)	50, 344
BstMBI	GATC	3 cut(s)	93, 234, 393
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 72, 296
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	30, 348
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	364
CviAII	CATG	2 cut(s)	56, 181
CviJI	RGCY	9 cut(s)	5, 54, 179, 220, 285, 290, 376, 438, 498
CviKI_1	RGCY	9 cut(s)	5, 54, 179, 220, 285, 290, 376, 438, 498
DdeI	CTNAG	3 cut(s)	191, 340, 434
DpnI	GATC	3 cut(s)	95, 236, 395
DpnII	GATC	3 cut(s)	93, 234, 393
DraIII	CACNNNGTG	1 cut(s)	110
DrdI	GACNNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	2 cut(s)	59, 184
FaiI	YATR	5 cut(s)	57, 64, 182, 262, 318
FatI	CATG	2 cut(s)	55, 180
FspBI	CTAG	1 cut(s)	499
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	221, 377
Hin1II	CATG	2 cut(s)	59, 184
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	326, 470
HpaII	CCGG	2 cut(s)	221, 377
HphI	GGTGA	2 cut(s)	163, 388
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	93, 210, 244
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	109, 342
HpyCH4III	ACNGT	4 cut(s)	34, 214, 404, 457
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	75, 165, 198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 72, 296
HpyF3I	CTNAG	3 cut(s)	191, 340, 434
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	59, 184
Kzo9I	GATC	3 cut(s)	93, 234, 393
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	5 cut(s)	234, 279, 306, 390, 477
MaeI	CTAG	1 cut(s)	499
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	4 cut(s)	28, 67, 97, 151
MalI	GATC	3 cut(s)	95, 236, 395
MboI	GATC	3 cut(s)	93, 234, 393
MboII	GAAGA	5 cut(s)	31, 222, 403, 465, 473
MhlI	GDGCHC	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	1 cut(s)	47
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	186, 429
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	221, 377
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	11, 72, 296
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	3 cut(s)	93, 234, 393
NlaIII	CATG	2 cut(s)	59, 184
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	28, 151
PfeI	GAWTC	2 cut(s)	326, 470
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	186, 429
Sau3AI	GATC	3 cut(s)	93, 234, 393
Sau96I	GGNCC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	5 cut(s)	120, 147, 253, 287, 440
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SspMI	CTAG	1 cut(s)	499
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	4 cut(s)	34, 214, 404, 457
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	233, 459
TaqII	GACCGA	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	326, 470
Tru1I	TTAA	2 cut(s)	186, 429
Tru9I	TTAA	2 cut(s)	186, 429
TscAI	CASTG	2 cut(s)	37, 348
TseFI	GTSAC	2 cut(s)	28, 151
Tsp45I	GTSAC	2 cut(s)	28, 151
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	2 cut(s)	37, 348
VpaK11BI	GGWCC	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XspI	CTAG	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.