Rorug06G0272300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011679
Physical Location & Seq
Forward (+)
41972631 .. 41973086
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0272300.1

Sequence Viewer

Length: 357 bp
ATGGGGTTTTCCTTTCCTCATCGTCTTCTTAAAAACTTTCAAGGTGAGGATAATGGCGTTTGGTACCGATTTGACAATATCAGGGTTGGGTGGACGTCCGACGTTGACGTTACCGAACGGGGGGCTGTTGATCGTAGGGCTGTCGGGATGGAAGGCTGGCGGAGCGAGTTGGATGGGCTTGGCCACCATTTGATGTGGCGTTGTAGGGGCATGATGGGTCATGAACCGACGACGATTGGGTCTGGCTCTGTCAATGTTGGCGGCGGGGGAATGGTCATCAGCGGTGGTGTAGATGGTGTGGAGCTGTTGACGGCTAGTTTGTGGCCTAGGTTTATAGGGATTCTTCCTGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.94

Weight (kDa)

6.04

Isoelectric Point (pI)

26.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011679)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32090
fragaria_vesca FvH4_2g28680
malus_domestica MD15G1128900.v1.1
prunus_persica Prupe.1G484200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0297451
rosa_laevigata RLG00000011597
rosa_multiflora Rmu_sc0001572.1_g000018 Rmu_sc0004323.1_g000007
rosa_roxburghii Rroxscaffold_7G00170470 Rroxscaffold_7G00170490
rosa_rugosa Rorug06G0272200 Rorug06G0272300
rosa_samantha Rh6AG383300 Rh6AG383400 Rh6CG396800 Rh6CG397200 Rh6DG384100
rosa_wichuraiana Rw6G033380 Rw6G033390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
AatII GACGTC 1 cut(s) 98
Acc65I GGTACC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 63
AciI CCGC 4 cut(s) 160, 261, 264, 282
AcoI YGGCCR 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 1 cut(s) 41
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
AoxI GGCC 2 cut(s) 181, 323
ArsI GACNNNNNNTTYG 2 cut(s) 301, 333
Asp718I GGTACC 1 cut(s) 63
AspA2I CCTAGG 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 56
AvrII CCTAGG 1 cut(s) 326
BalI TGGCCA 1 cut(s) 183
BanI GGYRCC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 17
BccI CCATC 4 cut(s) 142, 167, 208, 287
BceAI ACGGC 1 cut(s) 327
BfaI CTAG 2 cut(s) 315, 327
BisI GCNGC 1 cut(s) 262
BlnI CCTAGG 1 cut(s) 326
BlsI GCNGC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 2 cut(s) 153, 178
BseLI CCNNNNNNNGG 1 cut(s) 120
BshFI GGCC 2 cut(s) 183, 325
BshNI GGYRCC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 120
BsnI GGCC 2 cut(s) 183, 325
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 4 cut(s) 160, 261, 264, 282
BspANI GGCC 2 cut(s) 183, 325
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 1 cut(s) 130
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 158
BstF5I GGATG 2 cut(s) 153, 178
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 183, 325
BtsCI GGATG 2 cut(s) 153, 178
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 1 cut(s) 220
Csp6I GTAC 1 cut(s) 64
CviAII CATG 2 cut(s) 211, 221
CviJI RGCY 9 cut(s) 125, 140, 156, 178, 183, 246, 304, 314, 325
CviKI_1 RGCY 9 cut(s) 125, 140, 156, 178, 183, 246, 304, 314, 325
CviQI GTAC 1 cut(s) 64
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 181
EciI GGCGGA 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 2 cut(s) 214, 224
FaiI YATR 3 cut(s) 212, 222, 335
FatI CATG 2 cut(s) 210, 220
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 2 cut(s) 160, 185
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 2 cut(s) 315, 327
GluI GCNGC 1 cut(s) 262
HaeIII GGCC 2 cut(s) 183, 325
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 2 cut(s) 214, 224
HincII GTYRAC 2 cut(s) 106, 309
HindII GTYRAC 2 cut(s) 106, 309
HinfI GANTC 1 cut(s) 340
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 3 cut(s) 93, 106, 309
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 145, 221
Hpy8I GTNNAC 3 cut(s) 93, 106, 309
Hpy99I CGWCG 3 cut(s) 104, 232, 235
HpyAV CCTTC 1 cut(s) 146
HpyCH4IV ACGT 3 cut(s) 95, 102, 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpySE526I ACGT 3 cut(s) 95, 102, 108
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 214, 224
KpnI GGTACC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 162, 301
LpnPI CCDG 3 cut(s) 67, 142, 228
MaeI CTAG 2 cut(s) 315, 327
MaeII ACGT 3 cut(s) 95, 102, 108
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 17, 335
MlsI TGGCCA 1 cut(s) 183
MluNI TGGCCA 1 cut(s) 183
MmeI TCCRAC 2 cut(s) 123, 150
MnlI CCTC 2 cut(s) 27, 40
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 1 cut(s) 130
NlaIII CATG 2 cut(s) 214, 224
NlaIV GGNNCC 1 cut(s) 65
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 65
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 1 cut(s) 130
SetI ASST 6 cut(s) 46, 98, 105, 111, 306, 332
SsiI CCGC 4 cut(s) 160, 261, 264, 282
SspMI CTAG 2 cut(s) 315, 327
StyI CCWWGG 1 cut(s) 326
TaiI ACGT 3 cut(s) 98, 105, 111
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 237
XmaJI CCTAGG 1 cut(s) 326
XspI CTAG 2 cut(s) 315, 327
ZraI GACGTC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.