Rh6CG397200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011679
Physical Location & Seq
Reverse (-)
58410478 .. 58411053
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG397200.1

Sequence Viewer

Length: 378 bp
ATGGCCGCCATCGCCAACTCTCTCATTGTCATTGTCCTCTTCAGTCTCATGATTAGCCATGGGTTATGCGTTACTTGCACCAATAAGGACATTCAGATCGTTACGACACGGAGTGGGAAGGTGGTTCAAGGCAAACCCGAATGGAACGTGGTGGTGACTAACACCTGCAAGTGCTCTCAAGCCATGATTAAACTGAGTTGCAAGGGATTTCAGACTGTAGAGCCGGTCAGTTCTTCGATCCTATCGGACATAGGTGCTGACACATATCAACTCATCAACGGCGATAGCTTGGCTCCTGGTGCTTTTGTCAAGTTCTCCTATGCTTGGGATTCTCCTTCCAGTATATTGCCTGCTGACTCTGTTTCTATTCCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.24

Weight (kDa)

6.51

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 28 - 114 4.9e-25 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011679)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32090
fragaria_vesca FvH4_2g28680
malus_domestica MD15G1128900.v1.1
prunus_persica Prupe.1G484200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0297451
rosa_laevigata RLG00000011597
rosa_multiflora Rmu_sc0001572.1_g000018 Rmu_sc0004323.1_g000007
rosa_roxburghii Rroxscaffold_7G00170470 Rroxscaffold_7G00170490
rosa_rugosa Rorug06G0272200 Rorug06G0272300
rosa_samantha Rh6AG383300 Rh6AG383400 Rh6CG396800 Rh6CG397200 Rh6DG384100
rosa_wichuraiana Rw6G033380 Rw6G033390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 173
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 25
AdeI CACNNNGTG 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 232
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 176
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 339
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 96, 237
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 96, 237
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 58
BstKTI GATC 2 cut(s) 99, 240
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 2 cut(s) 96, 237
BstMWI GCNNNNNNNGC 3 cut(s) 11, 75, 299
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 216
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 351
CciI TCATGA 1 cut(s) 48
Cfr10I RCCGGY 1 cut(s) 223
CviAII CATG 3 cut(s) 49, 59, 184
CviJI RGCY 6 cut(s) 5, 57, 182, 223, 288, 293
CviKI_1 RGCY 6 cut(s) 5, 57, 182, 223, 288, 293
DdeI CTNAG 1 cut(s) 194
DpnI GATC 2 cut(s) 98, 239
DpnII GATC 2 cut(s) 96, 237
DraIII CACNNNGTG 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 52, 62, 187
FaiI YATR 8 cut(s) 50, 60, 67, 185, 251, 265, 321, 344
FatI CATG 3 cut(s) 48, 58, 183
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 224
Hin1II CATG 3 cut(s) 52, 62, 187
HinfI GANTC 2 cut(s) 329, 356
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 96, 213, 247
Hpy188III TCNNGA 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 112, 345
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 78, 168, 201
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 75, 299
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 52, 62, 187
Kzo9I GATC 2 cut(s) 96, 237
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 6 cut(s) 178, 237, 282, 309, 352, 363
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 3 cut(s) 70, 100, 154
MalI GATC 2 cut(s) 98, 239
MboI GATC 2 cut(s) 96, 237
MboII GAAGA 2 cut(s) 31, 225
MhlI GDGCHC 1 cut(s) 176
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 1 cut(s) 47
MseI TTAA 1 cut(s) 189
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 11, 75, 299
NcoI CCATGG 1 cut(s) 58
NdeII GATC 2 cut(s) 96, 237
NlaIII CATG 3 cut(s) 52, 62, 187
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 154
PagI TCATGA 1 cut(s) 48
PaqCI CACCTGC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 96, 237
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 1 cut(s) 176
SetI ASST 5 cut(s) 123, 150, 167, 256, 290
SfcI CTRYAG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
SsiI CCGC 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 236
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.