Rorug06G0272200

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
41971746 .. 41972060
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0272200.1

Sequence Viewer

Length: 315 bp
ATGAAGATTGGCCAACAGGAATCAATTTGCAGGCGACGATTGGACCATGCTGGATGCGGGTGGCACCTTTCATATTCCCAGAACAAGGTGGCGAGGGATGTCCAACTCCATTTGGCAAGGGGACAGTGCGAGGCTATGCACTTCGAGGTGTGGTGGCTAATGCATGTGAGCACTGATTTGCTGGGGCAGTGGCGGAGCTCGGTTTATTTGGAAATGACCGCCGATAACACAGGTGGTGTGTTAGGGTGCCCAGAACTGAATGGATGCCCCAAAATTTTGGGATTTAGATTTGGGCCCAAGTGTGGATCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.66

Weight (kDa)

8.28

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011679)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 63, 246
AciI CCGC 3 cut(s) 57, 193, 219
AclWI GGATC 1 cut(s) 313
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 85, 302
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 2 cut(s) 173, 200
AlwI GGATC 1 cut(s) 313
AoxI GGCC 2 cut(s) 10, 293
ApaI GGGCCC 1 cut(s) 297
ApoI RAATTY 1 cut(s) 273
AspS9I GGNCC 3 cut(s) 43, 293, 294
AvaII GGWCC 1 cut(s) 43
BaeGI GKGCMC 2 cut(s) 251, 297
BalI TGGCCA 1 cut(s) 12
BanI GGYRCC 2 cut(s) 63, 246
BanII GRGCYC 2 cut(s) 200, 297
Bbv12I GWGCWC 2 cut(s) 173, 200
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 3 cut(s) 43, 293, 294
BmiI GGNNCC 3 cut(s) 65, 248, 295
BmsI GCATC 2 cut(s) 44, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 302
BseGI GGATG 3 cut(s) 59, 103, 269
BseLI CCNNNNNNNGG 2 cut(s) 85, 302
BseSI GKGCMC 2 cut(s) 251, 297
BseYI CCCAGC 1 cut(s) 181
BshFI GGCC 2 cut(s) 12, 295
BshNI GGYRCC 2 cut(s) 63, 246
BsiHKAI GWGCWC 2 cut(s) 173, 200
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 85, 302
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 2 cut(s) 12, 295
Bsp120I GGGCCC 1 cut(s) 293
Bsp1286I GDGCHC 4 cut(s) 173, 200, 251, 297
Bsp143I GATC 1 cut(s) 305
BspACI CCGC 3 cut(s) 57, 193, 219
BspANI GGCC 2 cut(s) 12, 295
BspLI GGNNCC 3 cut(s) 65, 248, 295
BspPI GGATC 1 cut(s) 313
BspT107I GGYRCC 2 cut(s) 63, 246
BssMI GATC 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 32
BstF5I GGATG 3 cut(s) 59, 103, 269
BstKTI GATC 1 cut(s) 308
BstMBI GATC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 167
BstSLI GKGCMC 2 cut(s) 251, 297
BstXI CCANNNNNNTGG 1 cut(s) 277
BsuRI GGCC 2 cut(s) 12, 295
BtsCI GGATG 3 cut(s) 59, 103, 269
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 3 cut(s) 131, 171, 194
Cac8I GCNNGC 1 cut(s) 32
Cfr13I GGNCC 3 cut(s) 43, 293, 294
CviAII CATG 2 cut(s) 47, 164
CviJI RGCY 5 cut(s) 12, 134, 157, 198, 295
CviKI_1 RGCY 5 cut(s) 12, 134, 157, 198, 295
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 10
EciI GGCGGA 1 cut(s) 208
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 2 cut(s) 200, 297
Eco47I GGWCC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 2 cut(s) 200, 297
FaeI CATG 2 cut(s) 50, 167
FaiI YATR 4 cut(s) 48, 73, 137, 165
FaqI GGGAC 1 cut(s) 135
FatI CATG 2 cut(s) 46, 163
FauI CCCGC 1 cut(s) 50
FokI GGATG 3 cut(s) 66, 110, 276
FriOI GRGCYC 2 cut(s) 200, 297
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 12, 295
Hin1II CATG 2 cut(s) 50, 167
HinfI GANTC 1 cut(s) 20
Hpy99I CGWCG 1 cut(s) 39
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 30, 139, 163
Hsp92II CATG 2 cut(s) 50, 167
Kzo9I GATC 1 cut(s) 305
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 8 cut(s) 2, 16, 36, 92, 167, 216, 264, 294
LweI GCATC 2 cut(s) 44, 254
MalI GATC 1 cut(s) 307
MboI GATC 1 cut(s) 305
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 4 cut(s) 173, 200, 251, 297
MlsI TGGCCA 1 cut(s) 12
MluCI AATT 2 cut(s) 24, 273
MluNI TGGCCA 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 3 cut(s) 87, 124, 139
Mox20I TGGCCA 1 cut(s) 12
Mph1103I ATGCAT 1 cut(s) 165
MscI TGGCCA 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 12
NdeII GATC 1 cut(s) 305
NlaIII CATG 2 cut(s) 50, 167
NlaIV GGNNCC 3 cut(s) 65, 248, 295
NsiI ATGCAT 1 cut(s) 165
NspI RCATGY 1 cut(s) 167
PfeI GAWTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 65, 248, 295
PspOMI GGGCCC 1 cut(s) 293
PspPI GGNCC 3 cut(s) 43, 293, 294
SacI GAGCTC 1 cut(s) 200
Sau3AI GATC 1 cut(s) 305
Sau96I GGNCC 3 cut(s) 43, 293, 294
SduI GDGCHC 4 cut(s) 173, 200, 251, 297
SetI ASST 6 cut(s) 69, 90, 150, 200, 235, 313
SfaNI GCATC 2 cut(s) 44, 254
SinI GGWCC 1 cut(s) 43
Sse9I AATT 2 cut(s) 24, 273
SsiI CCGC 3 cut(s) 57, 193, 219
SstI GAGCTC 1 cut(s) 200
TaaI ACNGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 24, 273
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 3 cut(s) 131, 178, 194
TspDTI ATGAA 2 cut(s) 17, 60
TspRI CASTG 3 cut(s) 131, 178, 194
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 273
XceI RCATGY 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.