MD15G1128900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011679
Physical Location & Seq
Forward (+)
9328461 .. 9328760
300 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1128900.v1.1.491

Sequence Viewer

Length: 300 bp
ATGAAATTTGTAGGCTTTTGTGCTTGTTCTTTGGACAACCTCAACATCGGCACGTACCGGAGTGGGAGAGAGGTAAGAGGCAAGCCAGAATGGAACGTTGTTGTGACGAACAACTGCAATTGTGCTCGAAACCACATAGTCTTGAGTTGCCAAGGATTTCAGACTGTGGAACCTGTTGATCCAGCAATCCTAGAAAAGCGAGGGGACGAGTGCGTCCTCATCAGAGGCGATAGCTTGGCCGCTGGTGCTTGGGATCCTCCTGTGCATATGCTGCCTAAATCTTTTAGCGGTGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.77

Weight (kDa)

6.69

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 12 - 82 1e-17 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011679)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32090
fragaria_vesca FvH4_2g28680
malus_domestica MD15G1128900.v1.1
prunus_persica Prupe.1G484200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0297451
rosa_laevigata RLG00000011597
rosa_multiflora Rmu_sc0001572.1_g000018 Rmu_sc0004323.1_g000007
rosa_roxburghii Rroxscaffold_7G00170470 Rroxscaffold_7G00170490
rosa_rugosa Rorug06G0272200 Rorug06G0272300
rosa_samantha Rh6AG383300 Rh6AG383400 Rh6CG396800 Rh6CG397200 Rh6DG384100
rosa_wichuraiana Rw6G033380 Rw6G033390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AciI CCGC 2 cut(s) 240, 288
AclI AACGTT 1 cut(s) 96
AclWI GGATC 3 cut(s) 173, 248, 261
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 5
AfaI GTAC 1 cut(s) 56
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 127
AlwI GGATC 3 cut(s) 173, 248, 261
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 1 cut(s) 5
BamHI GGATCC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 258
BfaI CTAG 1 cut(s) 191
BisI GCNGC 2 cut(s) 240, 272
BlsI GCNGC 2 cut(s) 241, 273
BmiI GGNNCC 2 cut(s) 171, 255
BpuEI CTTGAG 1 cut(s) 163
BsaAI YACGTR 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 258
BshFI GGCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 178, 253
BspACI CCGC 2 cut(s) 240, 288
BspANI GGCC 1 cut(s) 239
BspLI GGNNCC 2 cut(s) 171, 255
BspPI GGATC 3 cut(s) 173, 248, 261
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 2 cut(s) 178, 253
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 83
BstF5I GGATG 1 cut(s) 299
BstKTI GATC 2 cut(s) 181, 256
BstMBI GATC 2 cut(s) 178, 253
BstMWI GCNNNNNNNGC 2 cut(s) 245, 271
BstV1I GCAGC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 83
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 4 cut(s) 15, 85, 234, 239
CviKI_1 RGCY 4 cut(s) 15, 85, 234, 239
CviQI GTAC 1 cut(s) 55
DpnI GATC 2 cut(s) 180, 255
DpnII GATC 2 cut(s) 178, 253
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaiI YATR 3 cut(s) 137, 267, 269
FaqI GGGAC 1 cut(s) 218
FauNDI CATATG 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 240, 272
Fsp4HI GCNGC 2 cut(s) 240, 272
FspBI CTAG 1 cut(s) 191
GluI GCNGC 2 cut(s) 240, 272
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 58
HgaI GACGC 1 cut(s) 202
HpaII CCGG 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 162, 224
Hpy188III TCNNGA 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 2 cut(s) 53, 96
HpyCH4V TGCA 2 cut(s) 117, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 271
HpySE526I ACGT 2 cut(s) 53, 96
Kzo9I GATC 2 cut(s) 178, 253
LpnPI CCDG 6 cut(s) 71, 99, 186, 195, 228, 273
Lsp1109I GCAGC 1 cut(s) 258
MaeI CTAG 1 cut(s) 191
MaeII ACGT 2 cut(s) 53, 96
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 180, 255
MboI GATC 2 cut(s) 178, 253
MfeI CAATTG 1 cut(s) 118
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 5, 118
MnlI CCTC 7 cut(s) 50, 64, 71, 194, 218, 227, 267
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 58
MunI CAATTG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 245, 271
NdeI CATATG 1 cut(s) 267
NdeII GATC 2 cut(s) 178, 253
NlaIV GGNNCC 2 cut(s) 171, 255
NmuCI GTSAC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 241, 273
Ppu21I YACGTR 1 cut(s) 54
Psp1406I AACGTT 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 171, 255
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SatI GCNGC 2 cut(s) 240, 272
Sau3AI GATC 2 cut(s) 178, 253
SduI GDGCHC 1 cut(s) 127
SetI ASST 6 cut(s) 42, 56, 75, 99, 175, 236
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 2 cut(s) 5, 118
SsiI CCGC 2 cut(s) 240, 288
SspMI CTAG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 2 cut(s) 56, 99
TaqI TCGA 1 cut(s) 127
TasI AATT 2 cut(s) 5, 118
TauI GCSGC 1 cut(s) 242
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 5
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.