Rmu_sc0001572.1_g000018

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001572.1
Physical Location & Seq
Forward (+)
47960 .. 49439
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001572.1_g000018.1.cds

Sequence Viewer

Length: 369 bp
atgggttggatgacgcaggtagcgagcataccaaaggctccgccattgatgaagggcttaatggaaagatctgggttatgccttacttgcaccaacaaggacattcagatctttacgacactgagtgggaaggtggttcaaggcaaacccgaatggaacgtggtggtgactaacacctgtaagtgctctgaagccatgattaaactgagttgcaagggatttcaggctgtagagccggtcatttcttcaatcctatcggagataggtgttgacacttatcaactcatcaatggcgacaccttggctcctggagctttttgtgaagttctcatatgcttgggattctccttccagtatattacctgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.2

Weight (kDa)

6.16

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011679)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 7
AciI CCGC 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 140, 249
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw21I GWGCWC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 7
BglII AGATCT 2 cut(s) 68, 108
Bme1390I CCNGG 1 cut(s) 309
BmiI GGNNCC 2 cut(s) 39, 306
BmrFI CCNGG 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 113, 197
BseNI ACTGG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 68, 108
BspACI CCGC 1 cut(s) 41
BspCNI CTCAG 2 cut(s) 114, 198
BspLI GGNNCC 2 cut(s) 39, 306
BspMI ACCTGC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 68, 108
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 122, 206
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 2 cut(s) 71, 111
BstMBI GATC 2 cut(s) 68, 108
BstMWI GCNNNNNNNGC 2 cut(s) 87, 311
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 228
BstX2I RGATCY 2 cut(s) 68, 108
BstYI RGATCY 2 cut(s) 68, 108
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 119
BveI ACCTGC 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 235
CseI GACGC 1 cut(s) 22
CviAII CATG 1 cut(s) 196
CviJI RGCY 7 cut(s) 38, 57, 194, 227, 235, 305, 314
CviKI_1 RGCY 7 cut(s) 38, 57, 194, 227, 235, 305, 314
DdeI CTNAG 2 cut(s) 122, 206
DpnI GATC 2 cut(s) 70, 110
DpnII GATC 2 cut(s) 68, 108
DraIII CACNNNGTG 1 cut(s) 125
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 1 cut(s) 199
FaiI YATR 6 cut(s) 29, 79, 197, 332, 334, 357
FatI CATG 1 cut(s) 195
FauNDI CATATG 1 cut(s) 332
FokI GGATG 1 cut(s) 22
GsuI CTGGAG 1 cut(s) 330
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 22
Hin1II CATG 1 cut(s) 199
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 1 cut(s) 342
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 3 cut(s) 108, 190, 259
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 3 cut(s) 46, 124, 358
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 2 cut(s) 90, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 311
HpyF3I CTNAG 2 cut(s) 122, 206
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 2 cut(s) 68, 108
LmnI GCTCC 3 cut(s) 43, 310, 311
LpnPI CCDG 8 cut(s) 2, 57, 190, 209, 249, 294, 321, 365
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 70, 110
MboI GATC 2 cut(s) 68, 108
MboII GAAGA 1 cut(s) 237
MflI RGATCY 2 cut(s) 68, 108
MhlI GDGCHC 1 cut(s) 188
MseI TTAA 2 cut(s) 59, 201
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 87, 311
NdeI CATATG 1 cut(s) 332
NdeII GATC 2 cut(s) 68, 108
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 39, 306
NmuCI GTSAC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 39, 306
PsuI RGATCY 2 cut(s) 68, 108
SaqAI TTAA 2 cut(s) 59, 201
Sau3AI GATC 2 cut(s) 68, 108
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 188
SetI ASST 8 cut(s) 21, 135, 162, 179, 268, 302, 316, 365
SfcI CTRYAG 1 cut(s) 228
SsiI CCGC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 300
TaiI ACGT 1 cut(s) 162
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 2 cut(s) 59, 201
Tru9I TTAA 2 cut(s) 59, 201
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.