Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009835

Physical Location & Seq

Genomic Coordinates Forward (+)

15723345 .. 15726141

Gene Structure 2797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGGTGTTTCTCTTCTGAAACAACAACATCGTATTACAAATCAAGCTGATACTTTTTCTAGATTCATGGAAAGATCACCAGAGAATAATCTAAGCAGAAATGAGCACATCATCATTGACATTCCAAGAAATGCCGCCATTGCATCATCATCATCTTCTCATGATAGAATCTCAAATGTTTTGGAACCTTTACAACATGAGGAAGAGAGACCTTCTACTGTTTCTCCCATGGCTGCTCCTCAGCCAGCTACAGCTACAGCTTCTTCTTCTTCTTCTATGCGATCAAATCCTAGAAGTGTCCGTCGTAGAAGAAGTCCTTTGAATTCTGGCTTATGGATTTCTATTGAACTATTCCTCACTGTTGGTCAGATCATTGCAGCTATTGTCGTTTTGTCTTTGTCAAAACATGAGCATCCTCGTGCTCCTTTGTTCACTTGGATTGTTGGTTATGCGTGTGGATGCGTTGCTACACTCCCGCTTTTGTACTGGAGATATTATCATTCGAATCAGGCTTCTGAACAGGATTCTGGTCAGCACCGTCCTAATCTTAATGTTGCAGCAGGACCATTCGCCTTCTCGATATCCAGGACATCCGAAGCAGATGGTCGACAGACCAATACCACCTCTTCTCGTGGTAGTAGATATCCTGGGTTTATAAGTGCTGCCAGACTTAAAGTTATCGTGGAATACTTCAAAATGGCTCTGGATTGCTTCTTTGCGGTGTGGTTTGTGGTAGGTAATGTATGGATATTTGGAGGGCATTCATCTGCTGCCGAGGCTCCTAACTTGTACAGGTTATGTTTAGTGTTTCTTACCTTTAGCTGTATTGGCTACGCGATGCCCTTCATCCTCTGTACAACAATATGTTGCTGCTTGCCTTGCATAATCTCAATTCTCGGATATAGAGAAGATTTAACGCAACCTCGAGGTGCCACACCTGAGTCGATTAATGCGTTGCCGACTCATAAATTTAAGTTGAAGAAAAGCAGAAGTAATGGCGATGACAATGGTTCAAGTACTAGCGAAGGTGGAGTTGTGGCGGCTGGAACAGATAACGAACGAGCTATTTCAGGAGAGGACGCAGTCTGTTGCATTTGCTTAGCGAAATATGCGAATAACGAGGAGTTAAGAGAGCTTCCATGCTCACATTTCTTCCACAAAGAGTGCGTTGACAAATGGCTGAAGATCAATGCCTCTTGCCCTCTATGCAAGAGCGAAGTTGGGGAGAAGAACTCTGATTTGACTAGCCAAGGGATCTTAACCTCGCTCTCTTCTGGGGAAAACGATAACCATCAACAACAGCAACAACAACAACGGAGTGAACTTAGAGTTGAGAATGGTTTGGCCAATAATGTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

453

Amino Acids

49.91

Weight (kDa)

7.85

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	363 - 404	2e-14	Ring finger domain
zf-RING_11	PF17123	363 - 390	1.4e-09	RING-like zinc finger
zf-rbx1	PF12678	363 - 404	2.2e-07	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	363 - 403	6.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32600 AT4G32600
fragaria_vesca	FvH4_2g30130 FvH4_2g30130 FvH4_2g30130
malus_domestica	MD15G1115700.v1.1
prunus_persica	Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1
pyrus_communis	pycom15g10430
rosa_chinensis	RchiOBHm_Chr6g0312801
rosa_laevigata	RLG00000010297
rosa_multiflora	Rmu_sc0008049.1_g000004
rosa_roxburghii	Rroxscaffold_7G00156480
rosa_rugosa	Rorug06G0399700 Rorug06G0399800
rosa_samantha	Rh6AG516800 Rh6BG528200 Rh6CG532900 Rh6DG519300
rosa_wichuraiana	Rw6G044890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
AbsI	CCTCGAGG	1 cut(s)	924
AccB1I	GGYRCC	1 cut(s)	929
AccI	GTMKAC	1 cut(s)	607
AccII	CGCG	1 cut(s)	836
AciI	CCGC	4 cut(s)	135, 476, 719, 1040
AclWI	GGATC	1 cut(s)	1262
AcoI	YGGCCR	1 cut(s)	1344
AcsI	RAATTY	2 cut(s)	322, 968
AcuI	CTGAAG	1 cut(s)	1202
AfaI	GTAC	4 cut(s)	485, 791, 856, 1018
AgsI	TTSAA	5 cut(s)	322, 347, 694, 979, 1014
AjnI	CCWGG	2 cut(s)	584, 646
AluBI	AGCT	8 cut(s)	47, 248, 254, 260, 380, 822, 1064, 1135
AluI	AGCT	8 cut(s)	47, 248, 254, 260, 380, 822, 1064, 1135
Alw21I	GWGCWC	2 cut(s)	108, 424
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	1262
Ama87I	CYCGRG	1 cut(s)	924
AoxI	GGCC	1 cut(s)	1344
ApeKI	GCWGC	6 cut(s)	233, 377, 557, 662, 770, 870
ApoI	RAATTY	2 cut(s)	322, 968
AseI	ATTAAT	1 cut(s)	948
AspS9I	GGNCC	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	69
AsuII	TTCGAA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	924
AvaII	GGWCC	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	1346
BanI	GGYRCC	1 cut(s)	929
BauI	CACGAG	2 cut(s)	417, 630
Bbv12I	GWGCWC	2 cut(s)	108, 424
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	6 cut(s)	220, 389, 569, 649, 757, 857
BccI	CCATC	2 cut(s)	596, 1299
BciT130I	CCWGG	2 cut(s)	586, 648
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	5 cut(s)	60, 291, 1020, 1245, 1360
BfmI	CTRYAG	2 cut(s)	249, 255
BisI	GCNGC	8 cut(s)	135, 234, 378, 558, 663, 771, 871, 1041
BlpI	GCTNAGC	1 cut(s)	1099
BlsI	GCNGC	8 cut(s)	136, 235, 379, 559, 664, 772, 872, 1042
BmcAI	AGTACT	1 cut(s)	1018
Bme1390I	CCNGG	2 cut(s)	586, 648
Bme18I	GGWCC	1 cut(s)	563
BmeT110I	CYCGRG	1 cut(s)	924
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	3 cut(s)	186, 780, 931
BmrFI	CCNGG	2 cut(s)	586, 648
BmsI	GCATC	4 cut(s)	152, 421, 449, 828
BplI	GAGNNNNNCTC	2 cut(s)	1217, 1249
BpmI	CTGGAG	1 cut(s)	508
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	1099
Bpu14I	TTCGAA	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	1290
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	4 cut(s)	228, 647, 774, 1249
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	2 cut(s)	138, 372
Bse8I	GATNNNNATC	1 cut(s)	1290
BseBI	CCWGG	2 cut(s)	586, 648
BseDI	CCNNGG	4 cut(s)	228, 647, 774, 1249
BseGI	GGATG	4 cut(s)	412, 464, 590, 846
BseJI	GATNNNNATC	1 cut(s)	1290
BseMI	GCAATG	2 cut(s)	138, 372
BseMII	CTCAG	2 cut(s)	254, 930
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	2 cut(s)	228, 1136
BseXI	GCAGC	6 cut(s)	220, 389, 569, 649, 757, 857
Bsh1236I	CGCG	1 cut(s)	836
BshFI	GGCC	1 cut(s)	1346
BshNI	GGYRCC	1 cut(s)	929
BsiHKAI	GWGCWC	2 cut(s)	108, 424
BsiHKCI	CYCGRG	1 cut(s)	924
BsmAI	GTCTC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	1 cut(s)	1346
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	924
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	2 cut(s)	108, 424
Bsp1407I	TGTACA	2 cut(s)	789, 854
Bsp143I	GATC	5 cut(s)	74, 281, 369, 1185, 1254
Bsp1720I	GCTNAGC	1 cut(s)	1099
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	4 cut(s)	135, 476, 719, 1040
BspANI	GGCC	1 cut(s)	1346
BspCNI	CTCAG	2 cut(s)	253, 931
BspFNI	CGCG	1 cut(s)	836
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	186, 780, 931
BspPI	GGATC	1 cut(s)	1262
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	929
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	138, 372
BsrGI	TGTACA	2 cut(s)	789, 854
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	4 cut(s)	228, 647, 774, 1249
BssMI	GATC	5 cut(s)	74, 281, 369, 1185, 1254
BssSI	CACGAG	2 cut(s)	417, 630
BssT1I	CCWWGG	2 cut(s)	228, 1249
Bst2BI	CACGAG	2 cut(s)	417, 630
Bst2UI	CCWGG	2 cut(s)	586, 648
Bst4CI	ACNGT	3 cut(s)	220, 361, 539
Bst6I	CTCTTC	4 cut(s)	18, 198, 631, 1276
BstAUI	TGTACA	2 cut(s)	789, 854
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	246, 875
BstDEI	CTNAG	5 cut(s)	92, 240, 939, 1099, 1325
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	4 cut(s)	412, 464, 590, 846
BstFNI	CGCG	1 cut(s)	836
BstKTI	GATC	5 cut(s)	77, 284, 372, 1188, 1257
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	5 cut(s)	74, 281, 369, 1185, 1254
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 776, 828, 879, 1109, 1206
BstNI	CCWGG	2 cut(s)	586, 648
BstSCI	CCNGG	2 cut(s)	584, 646
BstSFI	CTRYAG	2 cut(s)	249, 255
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	6 cut(s)	220, 389, 569, 649, 757, 857
BstX2I	RGATCY	1 cut(s)	1254
BstYI	RGATCY	1 cut(s)	1254
BsuRI	GGCC	1 cut(s)	1346
BtgI	CCRYGG	1 cut(s)	228
BtgZI	GCGATG	2 cut(s)	851, 1014
BtsCI	GGATG	4 cut(s)	412, 464, 590, 846
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	246, 875
CciI	TCATGA	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	563
CseI	GACGC	1 cut(s)	1088
Csp6I	GTAC	4 cut(s)	484, 790, 855, 1017
CviAII	CATG	6 cut(s)	67, 161, 197, 229, 407, 1140
CviQI	GTAC	4 cut(s)	484, 790, 855, 1017
DdeI	CTNAG	5 cut(s)	92, 240, 939, 1099, 1325
DpnI	GATC	5 cut(s)	76, 283, 371, 1187, 1256
DpnII	GATC	5 cut(s)	74, 281, 369, 1185, 1254
EaeI	YGGCCR	1 cut(s)	1344
Eam1104I	CTCTTC	4 cut(s)	18, 198, 631, 1276
EarI	CTCTTC	4 cut(s)	18, 198, 631, 1276
Eco130I	CCWWGG	2 cut(s)	228, 1249
Eco31I	GGTCTC	1 cut(s)	202
Eco32I	GATATC	2 cut(s)	582, 644
Eco47I	GGWCC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	1202
Eco88I	CYCGRG	1 cut(s)	924
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	584, 646
EcoRV	GATATC	2 cut(s)	582, 644
EcoT14I	CCWWGG	2 cut(s)	228, 1249
ErhI	CCWWGG	2 cut(s)	228, 1249
FaeI	CATG	6 cut(s)	70, 164, 200, 232, 410, 1143
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FatI	CATG	6 cut(s)	66, 160, 196, 228, 406, 1139
FauI	CCCGC	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	607
Fnu4HI	GCNGC	8 cut(s)	135, 234, 378, 558, 663, 771, 871, 1041
FokI	GGATG	4 cut(s)	399, 471, 577, 833
Fsp4HI	GCNGC	8 cut(s)	135, 234, 378, 558, 663, 771, 871, 1041
FspBI	CTAG	5 cut(s)	60, 291, 1020, 1245, 1360
GluI	GCNGC	8 cut(s)	135, 234, 378, 558, 663, 771, 871, 1041
GsuI	CTGGAG	1 cut(s)	508
HaeIII	GGCC	1 cut(s)	1346
HgaI	GACGC	1 cut(s)	1088
Hin1II	CATG	6 cut(s)	70, 164, 200, 232, 410, 1143
HincII	GTYRAC	2 cut(s)	608, 1171
HindII	GTYRAC	2 cut(s)	608, 1171
HinfI	GANTC	6 cut(s)	63, 168, 505, 524, 941, 961
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	4 cut(s)	432, 608, 1171, 1322
Hpy188I	TCNGA	6 cut(s)	18, 369, 517, 595, 899, 1237
Hpy188III	TCNNGA	5 cut(s)	60, 161, 577, 704, 1071
Hpy8I	GTNNAC	4 cut(s)	432, 608, 1171, 1322
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	4 cut(s)	222, 583, 853, 1019
HpyCH4III	ACNGT	3 cut(s)	220, 361, 539
HpyCH4V	TGCA	6 cut(s)	143, 377, 557, 882, 1092, 1209
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 776, 828, 879, 1109, 1206
HpyF3I	CTNAG	5 cut(s)	92, 240, 939, 1099, 1325
Hsp92II	CATG	6 cut(s)	70, 164, 200, 232, 410, 1143
Kzo9I	GATC	5 cut(s)	74, 281, 369, 1185, 1254
LmnI	GCTCC	3 cut(s)	241, 427, 784
Lsp1109I	GCAGC	6 cut(s)	220, 389, 569, 649, 757, 857
LweI	GCATC	4 cut(s)	152, 421, 449, 828
MaeI	CTAG	5 cut(s)	60, 291, 1020, 1245, 1360
MalI	GATC	5 cut(s)	76, 283, 371, 1187, 1256
MboI	GATC	5 cut(s)	74, 281, 369, 1185, 1254
MflI	RGATCY	1 cut(s)	1254
MhlI	GDGCHC	2 cut(s)	108, 424
MlsI	TGGCCA	1 cut(s)	1346
MluCI	AATT	3 cut(s)	322, 891, 968
MluNI	TGGCCA	1 cut(s)	1346
MlyI	GAGTC	2 cut(s)	950, 955
Mox20I	TGGCCA	1 cut(s)	1346
MscI	TGGCCA	1 cut(s)	1346
MseI	TTAA	7 cut(s)	549, 672, 914, 948, 972, 1127, 1259
MslI	CAYNNNNRTG	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	1346
MspR9I	CCNGG	2 cut(s)	586, 648
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	2 cut(s)	586, 648
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	6 cut(s)	140, 776, 828, 879, 1109, 1206
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	5 cut(s)	74, 281, 369, 1185, 1254
NlaIII	CATG	6 cut(s)	70, 164, 200, 232, 410, 1143
NlaIV	GGNNCC	3 cut(s)	186, 780, 931
NmeAIII	GCCGAG	1 cut(s)	799
NspV	TTCGAA	1 cut(s)	503
PaeR7I	CTCGAG	1 cut(s)	924
PagI	TCATGA	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	950
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	4 cut(s)	63, 168, 505, 524
PflFI	GACNNNGTC	1 cut(s)	1082
PfoI	TCCNGGA	1 cut(s)	584
PkrI	GCNGC	8 cut(s)	136, 235, 379, 559, 664, 772, 872, 1042
PleI	GAGTC	2 cut(s)	949, 955
PpsI	GAGTC	2 cut(s)	949, 955
PshBI	ATTAAT	1 cut(s)	948
PsiI	TTATAA	1 cut(s)	656
Psp6I	CCWGG	2 cut(s)	584, 646
PspGI	CCWGG	2 cut(s)	584, 646
PspN4I	GGNNCC	3 cut(s)	186, 780, 931
PspPI	GGNCC	1 cut(s)	563
PspXI	VCTCGAGB	1 cut(s)	924
PsuI	RGATCY	1 cut(s)	1254
PsyI	GACNNNGTC	1 cut(s)	1082
RsaI	GTAC	4 cut(s)	485, 791, 856, 1018
RsaNI	GTAC	4 cut(s)	484, 790, 855, 1017
RseI	CAYNNNNRTG	1 cut(s)	417
SalI	GTCGAC	1 cut(s)	606
SaqAI	TTAA	7 cut(s)	549, 672, 914, 948, 972, 1127, 1259
SatI	GCNGC	8 cut(s)	135, 234, 378, 558, 663, 771, 871, 1041
Sau3AI	GATC	5 cut(s)	74, 281, 369, 1185, 1254
Sau96I	GGNCC	1 cut(s)	563
ScaI	AGTACT	1 cut(s)	1018
SchI	GAGTC	2 cut(s)	950, 955
ScrFI	CCNGG	2 cut(s)	586, 648
SduI	GDGCHC	2 cut(s)	108, 424
SfaNI	GCATC	4 cut(s)	152, 421, 449, 828
SfcI	CTRYAG	2 cut(s)	249, 255
Sfr274I	CTCGAG	1 cut(s)	924
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	1 cut(s)	563
SlaI	CTCGAG	1 cut(s)	924
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	924
SmoI	CTYRAG	1 cut(s)	924
Sse9I	AATT	3 cut(s)	322, 891, 968
SsiI	CCGC	4 cut(s)	135, 476, 719, 1040
SspMI	CTAG	5 cut(s)	60, 291, 1020, 1245, 1360
StyD4I	CCNGG	2 cut(s)	584, 646
StyI	CCWWGG	2 cut(s)	228, 1249
TaaI	ACNGT	3 cut(s)	220, 361, 539
TaqI	TCGA	5 cut(s)	503, 578, 607, 925, 944
TasI	AATT	3 cut(s)	322, 891, 968
TatI	WGTACW	4 cut(s)	483, 789, 854, 1016
TauI	GCSGC	2 cut(s)	137, 1043
TfiI	GAWTC	4 cut(s)	63, 168, 505, 524
Tru1I	TTAA	7 cut(s)	549, 672, 914, 948, 972, 1127, 1259
Tru9I	TTAA	7 cut(s)	549, 672, 914, 948, 972, 1127, 1259
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	6 cut(s)	233, 377, 557, 662, 770, 870
TspDTI	ATGAA	3 cut(s)	55, 753, 835
TspGWI	ACGGA	2 cut(s)	290, 1330
TspRI	CASTG	1 cut(s)	364
Tth111I	GACNNNGTC	1 cut(s)	1082
VpaK11BI	GGWCC	1 cut(s)	563
VspI	ATTAAT	1 cut(s)	948
XapI	RAATTY	2 cut(s)	322, 968
XbaI	TCTAGA	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	924
XmiI	GTMKAC	1 cut(s)	607
XspI	CTAG	5 cut(s)	60, 291, 1020, 1245, 1360
ZrmI	AGTACT	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.