Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009835

Physical Location & Seq

Genomic Coordinates Reverse (-)

8144432 .. 8149484

Gene Structure 5053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1115700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGATCAATCACGACCTGAAGATATGAACCACACTCAGATTATTATTGACATACCTGGGAGTAGTGATGCCTCCCCATCTAGCTTGCCTCATGGTAGATCTTTAAATAACTCAAATGCATCACAGCAAGAGGACAGACCTTCAACTAGTCCAAGAGGACCTGCATTCCAACCTTCAATCTTTTCATCTAATGGACCAAACTCTAGGAACACTTCAATGGTAAGGAGAGGGGAGACTCGCCACCGCAGAAGTCCATTGAATTCTGGATTGTGGATTTCCATTGAACTTGTTCTTACAGTGAGCCAAATCGTTGCATCTATTGTTGTTTTGTCTTTGTCAAGGCATGAGCGTCCTCACACCCCGTTGTTTGCTTGGATTATTGGTTATGCGTCTGGATGTGTTGCTATTCTTCCTCTTCTTTACTGGCGCTATCGTCACCGCAACCAGGCTGCAGAACAAGATTCTGCTCAAGCTCGTCAGAATTCTCAGGTTAATGTGCCAGCAAGACCATTTTCTTTTTCTTTTTCTAGAGCTGCAGAAGGAGAAGATCTTCAAACTGGCACTGCATCTTCAAGAAGCAGTCAAAGTTCCGCAGTACAGAGCAGAAGAATCAAGGCACTTGTGGAATACTTCAAGATGGCATTGGATTGTTTCTTTGCGGTTTGGTTTGTCGTTGGCAATGTTTGGATTTTTGGTGGGCACTCATCTGCAGCAGACGCTCCTAACCTGTACAGGTTATGTATAGTATTTCTTACATTCAGCTGTATTGGATACGCCATGCCTTTCATTTTATGTGCAACAATCTGCTGTTGTCTTCCTTGCATTATATCAGTCCTTGGGTTTCGAGAGGACCTGGCACAGGCACGGGGAGCCACACCTGAATCAATTAATTCTCTGCCAACATACAAGTTCAAGATAAAGAAAAACAAAAATGGCGATAACAGAGATGGCGGCAGCTCAGGTGCCACTGAAGGTGGTGTTGTGGCTGCAGGAACTGAGAAGGAGCGTGCAATCTCTGGAGAGGATGCGGTTTGTTGCATCTGCTTGGCTAAATACGCAAACAACGACGAGCTGAGAGAGTTGCCATGCTCTCATTTTTTCCACAAGGACTGCGTGGATAAGTGGTTAAAGATCAATGCATCATGTCCCCTTTGCAAGAGCGAGGTCGGCGAGAGCCTTTTGGGCTCCCTCTCCGCAATCAATAGCAGCATTCATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

407

Amino Acids

44.34

Weight (kDa)

8.45

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	345 - 386	1.3e-14	Ring finger domain
zf-RING_11	PF17123	345 - 372	5.2e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	345 - 385	4.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	345 - 385	5.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	347 - 386	1.2e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32600 AT4G32600
fragaria_vesca	FvH4_2g30130 FvH4_2g30130 FvH4_2g30130
malus_domestica	MD15G1115700.v1.1
prunus_persica	Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1 Prupe.1G467000_v2.0.a1
pyrus_communis	pycom15g10430
rosa_chinensis	RchiOBHm_Chr6g0312801
rosa_laevigata	RLG00000010297
rosa_multiflora	Rmu_sc0008049.1_g000004
rosa_roxburghii	Rroxscaffold_7G00156480
rosa_rugosa	Rorug06G0399700 Rorug06G0399800
rosa_samantha	Rh6AG516800 Rh6BG528200 Rh6CG532900 Rh6DG519300
rosa_wichuraiana	Rw6G044890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	962
AciI	CCGC	7 cut(s)	244, 439, 591, 659, 951, 1028, 1194
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	259, 481
AcuI	CTGAAG	2 cut(s)	39, 990
AfaI	GTAC	2 cut(s)	597, 731
AfiI	CCNNNNNNNGG	2 cut(s)	445, 859
AgsI	TTSAA	9 cut(s)	144, 177, 216, 259, 284, 554, 573, 634, 913
AhlI	ACTAGT	1 cut(s)	146
AjnI	CCWGG	3 cut(s)	55, 444, 852
AluBI	AGCT	6 cut(s)	84, 473, 533, 762, 957, 1072
AluI	AGCT	6 cut(s)	84, 473, 533, 762, 957, 1072
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	995
ApeKI	GCWGC	6 cut(s)	449, 533, 710, 954, 986, 1206
ApoI	RAATTY	2 cut(s)	259, 481
AseI	ATTAAT	1 cut(s)	888
Asp700I	GAANNNNTTC	2 cut(s)	288, 549
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	3 cut(s)	158, 194, 850
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	3 cut(s)	158, 194, 850
BaeGI	GKGCMC	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	962
BanII	GRGCYC	1 cut(s)	1187
BbsI	GAAGAC	1 cut(s)	806
BbvI	GCAGC	5 cut(s)	436, 520, 722, 966, 973
BccI	CCATC	3 cut(s)	85, 631, 941
BciT130I	CCWGG	3 cut(s)	57, 446, 854
BciVI	GTATCC	1 cut(s)	764
BcoDI	GTCTC	1 cut(s)	227
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	4 cut(s)	81, 147, 204, 528
BfmI	CTRYAG	4 cut(s)	450, 534, 708, 987
BfoI	RGCGCY	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	764
BglI	GCCNNNNNGGC	1 cut(s)	1182
BglII	AGATCT	2 cut(s)	98, 547
BisI	GCNGC	7 cut(s)	450, 534, 711, 952, 955, 987, 1207
BlsI	GCNGC	7 cut(s)	451, 535, 712, 953, 956, 988, 1208
Bme1390I	CCNGG	3 cut(s)	57, 446, 854
Bme18I	GGWCC	3 cut(s)	158, 194, 850
BmgT120I	GGNCC	3 cut(s)	158, 194, 850
BmiI	GGNNCC	3 cut(s)	871, 964, 1186
BmrFI	CCNGG	3 cut(s)	57, 446, 854
BmsI	GCATC	7 cut(s)	58, 128, 323, 575, 1015, 1047, 1148
BpiI	GAAGAC	1 cut(s)	806
BpmI	CTGGAG	1 cut(s)	1038
Bpu10I	CCTNAGC	1 cut(s)	958
BpuEI	CTTGAG	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	56, 835
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 859
Bse1I	ACTGG	2 cut(s)	428, 562
Bse3DI	GCAATG	1 cut(s)	685
BseBI	CCWGG	3 cut(s)	57, 446, 854
BseDI	CCNNGG	2 cut(s)	56, 835
BseGI	GGATG	2 cut(s)	401, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	445, 859
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	5 cut(s)	50, 500, 972, 987, 1064
BseNI	ACTGG	2 cut(s)	428, 562
BseSI	GKGCMC	1 cut(s)	702
BseXI	GCAGC	5 cut(s)	436, 520, 722, 966, 973
BshNI	GGYRCC	1 cut(s)	962
BslFI	GGGAC	1 cut(s)	1131
BslI	CCNNNNNNNGG	2 cut(s)	445, 859
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	1131
BsmI	GAATGC	2 cut(s)	164, 1209
Bsp1286I	GDGCHC	2 cut(s)	702, 1187
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	4 cut(s)	4, 98, 547, 1131
BspACI	CCGC	7 cut(s)	244, 439, 591, 659, 951, 1028, 1194
BspCNI	CTCAG	5 cut(s)	49, 499, 971, 988, 1065
BspLI	GGNNCC	3 cut(s)	871, 964, 1186
BspMAI	CTGCAG	4 cut(s)	454, 538, 712, 991
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	962
BsrDI	GCAATG	1 cut(s)	685
BsrGI	TGTACA	1 cut(s)	729
BsrI	ACTGG	2 cut(s)	428, 562
BssECI	CCNNGG	2 cut(s)	56, 835
BssMI	GATC	4 cut(s)	4, 98, 547, 1131
BssT1I	CCWWGG	1 cut(s)	835
Bst2UI	CCWGG	3 cut(s)	57, 446, 854
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	420
BstAUI	TGTACA	1 cut(s)	729
BstC8I	GCNNGC	3 cut(s)	86, 501, 1008
BstDEI	CTNAG	5 cut(s)	36, 486, 958, 996, 1073
BstENI	CCTNNNNNAGG	1 cut(s)	857
BstF5I	GGATG	2 cut(s)	401, 1030
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	4 cut(s)	7, 101, 550, 1134
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	4 cut(s)	4, 98, 547, 1131
BstMWI	GCNNNNNNNGC	5 cut(s)	716, 869, 1055, 1167, 1182
BstNI	CCWGG	3 cut(s)	57, 446, 854
BstSCI	CCNGG	3 cut(s)	55, 444, 852
BstSFI	CTRYAG	4 cut(s)	450, 534, 708, 987
BstSLI	GKGCMC	1 cut(s)	702
BstV1I	GCAGC	5 cut(s)	436, 520, 722, 966, 973
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	2 cut(s)	98, 547
BstYI	RGATCY	2 cut(s)	98, 547
BsuI	GTATCC	1 cut(s)	764
BtsCI	GGATG	2 cut(s)	401, 1030
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	3 cut(s)	303, 561, 966
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	86, 501, 1008
CaiI	CAGNNNCTG	1 cut(s)	995
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	3 cut(s)	158, 194, 850
CseI	GACGC	3 cut(s)	338, 378, 725
Csp6I	GTAC	2 cut(s)	596, 730
CviAII	CATG	5 cut(s)	92, 344, 778, 1086, 1143
CviQI	GTAC	2 cut(s)	596, 730
DdeI	CTNAG	5 cut(s)	36, 486, 958, 996, 1073
DpnI	GATC	4 cut(s)	6, 100, 549, 1133
DpnII	GATC	4 cut(s)	4, 98, 547, 1131
DraI	TTTAAA	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	835
Eco24I	GRGCYC	1 cut(s)	1187
Eco47I	GGWCC	3 cut(s)	158, 194, 850
Eco57I	CTGAAG	2 cut(s)	39, 990
EcoNI	CCTNNNNNAGG	1 cut(s)	857
EcoO109I	RGGNCCY	2 cut(s)	158, 850
EcoRI	GAATTC	2 cut(s)	259, 481
EcoRII	CCWGG	3 cut(s)	55, 444, 852
EcoT14I	CCWWGG	1 cut(s)	835
EcoT22I	ATGCAT	2 cut(s)	121, 1141
EcoT38I	GRGCYC	1 cut(s)	1187
ErhI	CCWWGG	1 cut(s)	835
FaeI	CATG	5 cut(s)	95, 347, 781, 1089, 1146
FaqI	GGGAC	1 cut(s)	1131
FatI	CATG	5 cut(s)	91, 343, 777, 1085, 1142
Fnu4HI	GCNGC	7 cut(s)	450, 534, 711, 952, 955, 987, 1207
FokI	GGATG	2 cut(s)	408, 1037
FriOI	GRGCYC	1 cut(s)	1187
Fsp4HI	GCNGC	7 cut(s)	450, 534, 711, 952, 955, 987, 1207
FspBI	CTAG	4 cut(s)	81, 147, 204, 528
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	7 cut(s)	450, 534, 711, 952, 955, 987, 1207
GsuI	CTGGAG	1 cut(s)	1038
HaeII	RGCGCY	1 cut(s)	430
HgaI	GACGC	3 cut(s)	338, 378, 725
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	5 cut(s)	95, 347, 781, 1089, 1146
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HinfI	GANTC	4 cut(s)	235, 461, 609, 881
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	2 cut(s)	39, 480
Hpy188III	TCNNGA	9 cut(s)	12, 264, 393, 528, 573, 634, 845, 913, 1017
Hpy99I	CGWCG	1 cut(s)	1070
HpyAV	CCTTC	5 cut(s)	150, 183, 533, 965, 994
HpyCH4III	ACNGT	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	5 cut(s)	716, 869, 1055, 1167, 1182
HpyF3I	CTNAG	5 cut(s)	36, 486, 958, 996, 1073
Hsp92II	CATG	5 cut(s)	95, 347, 781, 1089, 1146
HspAI	GCGC	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	4, 98, 547, 1131
LmnI	GCTCC	4 cut(s)	724, 869, 1003, 1190
Lsp1109I	GCAGC	5 cut(s)	436, 520, 722, 966, 973
LweI	GCATC	7 cut(s)	58, 128, 323, 575, 1015, 1047, 1148
MaeI	CTAG	4 cut(s)	81, 147, 204, 528
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	4 cut(s)	6, 100, 549, 1133
MboI	GATC	4 cut(s)	4, 98, 547, 1131
MboII	GAAGA	8 cut(s)	32, 401, 407, 542, 557, 561, 618, 806
MflI	RGATCY	2 cut(s)	98, 547
MhlI	GDGCHC	2 cut(s)	702, 1187
MluCI	AATT	4 cut(s)	259, 481, 885, 889
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	193
Mph1103I	ATGCAT	2 cut(s)	121, 1141
MroXI	GAANNNNTTC	2 cut(s)	288, 549
MseI	TTAA	4 cut(s)	104, 492, 888, 1127
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	762
MspR9I	CCNGG	3 cut(s)	57, 446, 854
Mva1269I	GAATGC	2 cut(s)	164, 1209
MvaI	CCWGG	3 cut(s)	57, 446, 854
MwoI	GCNNNNNNNGC	5 cut(s)	716, 869, 1055, 1167, 1182
NdeII	GATC	4 cut(s)	4, 98, 547, 1131
NlaIII	CATG	5 cut(s)	95, 347, 781, 1089, 1146
NlaIV	GGNNCC	3 cut(s)	871, 964, 1186
NmuCI	GTSAC	1 cut(s)	434
NsiI	ATGCAT	2 cut(s)	121, 1141
PcsI	WCGNNNNNNNCGW	1 cut(s)	1062
PctI	GAATGC	2 cut(s)	164, 1209
PdmI	GAANNNNTTC	2 cut(s)	288, 549
PfeI	GAWTC	3 cut(s)	461, 609, 881
PkrI	GCNGC	7 cut(s)	451, 535, 712, 953, 956, 988, 1208
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PpuMI	RGGWCCY	2 cut(s)	158, 850
PshBI	ATTAAT	1 cut(s)	888
Psp5II	RGGWCCY	2 cut(s)	158, 850
Psp6I	CCWGG	3 cut(s)	55, 444, 852
PspGI	CCWGG	3 cut(s)	55, 444, 852
PspN4I	GGNNCC	3 cut(s)	871, 964, 1186
PspPI	GGNCC	3 cut(s)	158, 194, 850
PspPPI	RGGWCCY	2 cut(s)	158, 850
PstI	CTGCAG	4 cut(s)	454, 538, 712, 991
PstNI	CAGNNNCTG	1 cut(s)	995
PsuI	RGATCY	2 cut(s)	98, 547
PvuII	CAGCTG	1 cut(s)	762
RsaI	GTAC	2 cut(s)	597, 731
RsaNI	GTAC	2 cut(s)	596, 730
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	4 cut(s)	104, 492, 888, 1127
SatI	GCNGC	7 cut(s)	450, 534, 711, 952, 955, 987, 1207
Sau3AI	GATC	4 cut(s)	4, 98, 547, 1131
Sau96I	GGNCC	3 cut(s)	158, 194, 850
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	3 cut(s)	57, 446, 854
SduI	GDGCHC	2 cut(s)	702, 1187
SfaNI	GCATC	7 cut(s)	58, 128, 323, 575, 1015, 1047, 1148
SfcI	CTRYAG	4 cut(s)	450, 534, 708, 987
SinI	GGWCC	3 cut(s)	158, 194, 850
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	4 cut(s)	259, 481, 885, 889
SsiI	CCGC	7 cut(s)	244, 439, 591, 659, 951, 1028, 1194
SspMI	CTAG	4 cut(s)	81, 147, 204, 528
StyD4I	CCNGG	3 cut(s)	55, 444, 852
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	844
TasI	AATT	4 cut(s)	259, 481, 885, 889
TatI	WGTACW	2 cut(s)	595, 729
TauI	GCSGC	1 cut(s)	954
TfiI	GAWTC	3 cut(s)	461, 609, 881
Tru1I	TTAA	4 cut(s)	104, 492, 888, 1127
Tru9I	TTAA	4 cut(s)	104, 492, 888, 1127
TscAI	CASTG	3 cut(s)	303, 568, 973
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	6 cut(s)	449, 533, 710, 954, 986, 1206
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	4 cut(s)	41, 174, 775, 1202
TspRI	CASTG	3 cut(s)	303, 568, 973
VpaK11BI	GGWCC	3 cut(s)	158, 194, 850
VspI	ATTAAT	1 cut(s)	888
XagI	CCTNNNNNAGG	1 cut(s)	857
XapI	RAATTY	2 cut(s)	259, 481
XbaI	TCTAGA	1 cut(s)	527
XmnI	GAANNNNTTC	2 cut(s)	288, 549
XspI	CTAG	4 cut(s)	81, 147, 204, 528
Zsp2I	ATGCAT	2 cut(s)	121, 1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.